data_4RNO # _model_server_result.job_id taKdeaCe5OszVPBlFf05ig _model_server_result.datetime_utc '2024-11-14 04:18:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rno # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":503}' # _entry.id 4RNO # _exptl.entry_id 4RNO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RNO _cell.length_a 98.788 _cell.length_b 98.788 _cell.length_c 82.008 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNO _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O3' DG 4 T DG 4 1_555 B P 3DR 5 T 3DR 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale2 B O3' 3DR 5 T 3DR 5 1_555 B P DT 6 T DT 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? metalc ? metalc1 A OD1 ASP 16 A ASP 13 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc2 A OD2 ASP 16 A ASP 13 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc3 A O MET 17 A MET 14 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 A OD1 ASP 118 A ASP 115 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc5 D O1B DCP . A DCP 501 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 D O2A DCP . A DCP 501 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc7 D O1G DCP . A DCP 501 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? metalc ? metalc8 D O3A DCP . A DCP 501 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? hydrog WATSON-CRICK hydrog1 B N3 DT 6 T DT 6 1_555 C N1 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B O4 DT 6 T DT 6 1_555 C N6 DA 7 P DA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B N1 DG 7 T DG 7 1_555 C N3 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N2 DG 7 T DG 7 1_555 C O2 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O6 DG 7 T DG 7 1_555 C N4 DC 6 P DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 DA 8 T DA 8 1_555 C N3 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 DA 8 T DA 8 1_555 C O4 DT 5 P DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DC 9 T DC 9 1_555 C N1 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N4 DC 9 T DC 9 1_555 C O6 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B O2 DC 9 T DC 9 1_555 C N2 DG 4 P DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N1 DG 10 T DG 10 1_555 C N3 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N2 DG 10 T DG 10 1_555 C O2 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B O6 DG 10 T DG 10 1_555 C N4 DC 3 P DC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N3 DC 11 T DC 11 1_555 C N1 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N4 DC 11 T DC 11 1_555 C O6 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B O2 DC 11 T DC 11 1_555 C N2 DG 2 P DG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B N3 DT 12 T DT 12 1_555 C N1 DA 1 P DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B O4 DT 12 T DT 12 1_555 C N6 DA 1 P DA 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 346 n n C1 C2 GOL sing 347 n n C1 H11 GOL sing 348 n n C1 H12 GOL sing 349 n n O1 HO1 GOL sing 350 n n C2 O2 GOL sing 351 n n C2 C3 GOL sing 352 n n C2 H2 GOL sing 353 n n O2 HO2 GOL sing 354 n n C3 O3 GOL sing 355 n n C3 H31 GOL sing 356 n n C3 H32 GOL sing 357 n n O3 HO3 GOL sing 358 n n # _atom_sites.entry_id 4RNO _atom_sites.fract_transf_matrix[1][1] 0.010123 _atom_sites.fract_transf_matrix[1][2] 0.005844 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 DCP A 1 501 1 DCP DCP . E 5 CA A 1 502 1 CA CA . F 6 GOL A 1 503 1 GOL GOL . G 7 HOH A 1 601 2 HOH HOH . G 7 HOH A 2 602 3 HOH HOH . G 7 HOH A 3 603 4 HOH HOH . G 7 HOH A 4 604 5 HOH HOH . G 7 HOH A 5 605 6 HOH HOH . G 7 HOH A 6 606 7 HOH HOH . G 7 HOH A 7 607 9 HOH HOH . G 7 HOH A 8 608 10 HOH HOH . G 7 HOH A 9 609 11 HOH HOH . G 7 HOH A 10 610 13 HOH HOH . G 7 HOH A 11 611 15 HOH HOH . G 7 HOH A 12 612 16 HOH HOH . G 7 HOH A 13 613 18 HOH HOH . G 7 HOH A 14 614 19 HOH HOH . G 7 HOH A 15 615 21 HOH HOH . G 7 HOH A 16 616 22 HOH HOH . G 7 HOH A 17 617 24 HOH HOH . G 7 HOH A 18 618 25 HOH HOH . G 7 HOH A 19 619 26 HOH HOH . G 7 HOH A 20 620 27 HOH HOH . G 7 HOH A 21 621 28 HOH HOH . G 7 HOH A 22 622 29 HOH HOH . G 7 HOH A 23 623 30 HOH HOH . G 7 HOH A 24 624 31 HOH HOH . G 7 HOH A 25 625 32 HOH HOH . G 7 HOH A 26 626 34 HOH HOH . G 7 HOH A 27 627 35 HOH HOH . G 7 HOH A 28 628 37 HOH HOH . G 7 HOH A 29 629 38 HOH HOH . G 7 HOH A 30 630 39 HOH HOH . G 7 HOH A 31 631 41 HOH HOH . G 7 HOH A 32 632 42 HOH HOH . G 7 HOH A 33 633 43 HOH HOH . G 7 HOH A 34 634 44 HOH HOH . G 7 HOH A 35 635 45 HOH HOH . G 7 HOH A 36 636 46 HOH HOH . G 7 HOH A 37 637 47 HOH HOH . G 7 HOH A 38 638 48 HOH HOH . G 7 HOH A 39 639 50 HOH HOH . G 7 HOH A 40 640 51 HOH HOH . G 7 HOH A 41 641 52 HOH HOH . G 7 HOH A 42 642 56 HOH HOH . G 7 HOH A 43 643 57 HOH HOH . G 7 HOH A 44 644 58 HOH HOH . G 7 HOH A 45 645 59 HOH HOH . G 7 HOH A 46 646 60 HOH HOH . G 7 HOH A 47 647 61 HOH HOH . G 7 HOH A 48 648 62 HOH HOH . G 7 HOH A 49 649 63 HOH HOH . H 7 HOH T 1 101 12 HOH HOH . H 7 HOH T 2 102 17 HOH HOH . H 7 HOH T 3 103 20 HOH HOH . H 7 HOH T 4 104 23 HOH HOH . H 7 HOH T 5 105 33 HOH HOH . H 7 HOH T 6 106 36 HOH HOH . I 7 HOH P 1 101 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 6 105.205 152.958 -17.776 1 60.63 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . F 6 105.602 152.852 -16.427 1 58.64 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . F 6 106.439 152.892 -18.667 1 65.4 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . F 6 106.08 152.339 -19.912 1 68.56 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . F 6 106.974 154.304 -18.877 1 64.69 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . F 6 108.329 154.241 -19.262 1 67.17 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #