data_4RNQ # _model_server_result.job_id preKbiPLjeFVZz_i9cUPuw _model_server_result.datetime_utc '2024-11-05 05:31:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":603}' # _entry.id 4RNQ # _exptl.entry_id 4RNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RNQ _cell.length_a 126.75 _cell.length_b 126.75 _cell.length_c 124.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 303 A ASP 301 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc2 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A OD2 ASP 307 A ASP 305 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc4 A OD2 ASP 307 A ASP 305 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 A OG1 THR 450 A THR 448 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc6 B MG MG . A MG 601 1_555 E O22 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.65 ? metalc ? metalc7 B MG MG . A MG 601 1_555 G O3 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.42 ? metalc ? metalc8 C MG MG . A MG 602 1_555 E O18 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 C MG MG . A MG 602 1_555 E O19 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.956 ? metalc ? metalc10 C MG MG . A MG 602 1_555 G O5 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.09 ? metalc ? metalc11 C MG MG . A MG 602 1_555 G O3 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.937 ? metalc ? metalc12 C MG MG . A MG 602 1_555 G O4 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.982 ? metalc ? metalc13 D MG MG . A MG 603 1_555 E O23 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.601 ? metalc ? metalc14 D MG MG . A MG 603 1_555 G O1 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.794 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RNQ _atom_sites.fract_transf_matrix[1][1] 0.00789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 2 MG MG . D 2 MG A 1 603 3 MG MG . E 3 A4S A 1 604 1 A4S A4S . F 4 1GA A 1 605 2 1GA 1GF . G 5 DPO A 1 606 3 DPO DPO . H 6 ACT A 1 607 550 ACT ACT . I 7 HOH A 1 701 1 HOH HOH . I 7 HOH A 2 702 2 HOH HOH . I 7 HOH A 3 703 3 HOH HOH . I 7 HOH A 4 704 4 HOH HOH . I 7 HOH A 5 705 5 HOH HOH . I 7 HOH A 6 706 6 HOH HOH . I 7 HOH A 7 707 7 HOH HOH . I 7 HOH A 8 708 8 HOH HOH . I 7 HOH A 9 709 9 HOH HOH . I 7 HOH A 10 710 10 HOH HOH . I 7 HOH A 11 711 11 HOH HOH . I 7 HOH A 12 712 12 HOH HOH . I 7 HOH A 13 713 13 HOH HOH . I 7 HOH A 14 714 14 HOH HOH . I 7 HOH A 15 715 15 HOH HOH . I 7 HOH A 16 716 16 HOH HOH . I 7 HOH A 17 717 17 HOH HOH . I 7 HOH A 18 718 18 HOH HOH . I 7 HOH A 19 719 19 HOH HOH . I 7 HOH A 20 720 20 HOH HOH . I 7 HOH A 21 721 21 HOH HOH . I 7 HOH A 22 722 22 HOH HOH . I 7 HOH A 23 723 23 HOH HOH . I 7 HOH A 24 724 24 HOH HOH . I 7 HOH A 25 725 25 HOH HOH . I 7 HOH A 26 726 26 HOH HOH . I 7 HOH A 27 727 27 HOH HOH . I 7 HOH A 28 728 28 HOH HOH . I 7 HOH A 29 729 29 HOH HOH . I 7 HOH A 30 730 30 HOH HOH . I 7 HOH A 31 731 31 HOH HOH . I 7 HOH A 32 732 32 HOH HOH . I 7 HOH A 33 733 33 HOH HOH . I 7 HOH A 34 734 34 HOH HOH . I 7 HOH A 35 735 35 HOH HOH . I 7 HOH A 36 736 36 HOH HOH . I 7 HOH A 37 737 37 HOH HOH . I 7 HOH A 38 738 38 HOH HOH . I 7 HOH A 39 739 39 HOH HOH . I 7 HOH A 40 740 40 HOH HOH . I 7 HOH A 41 741 41 HOH HOH . I 7 HOH A 42 742 42 HOH HOH . I 7 HOH A 43 743 43 HOH HOH . I 7 HOH A 44 744 44 HOH HOH . I 7 HOH A 45 745 45 HOH HOH . I 7 HOH A 46 746 46 HOH HOH . I 7 HOH A 47 747 47 HOH HOH . I 7 HOH A 48 748 48 HOH HOH . I 7 HOH A 49 749 49 HOH HOH . I 7 HOH A 50 750 50 HOH HOH . I 7 HOH A 51 751 51 HOH HOH . I 7 HOH A 52 752 52 HOH HOH . I 7 HOH A 53 753 53 HOH HOH . I 7 HOH A 54 754 54 HOH HOH . I 7 HOH A 55 755 55 HOH HOH . I 7 HOH A 56 756 56 HOH HOH . I 7 HOH A 57 757 57 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.209 _atom_site.Cartn_y 84.296 _atom_site.Cartn_z 7.761 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 98.12 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 603 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #