data_4RNQ # _model_server_result.job_id z-tRcK4CrVyWIixpRgUBeQ _model_server_result.datetime_utc '2024-11-26 12:42:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":604}' # _entry.id 4RNQ # _exptl.entry_id 4RNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 405.32 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2E,6E)-3,7-dimethyl-8-(phenylamino)octa-2,6-dien-1-yl trihydrogen diphosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RNQ _cell.length_a 126.75 _cell.length_b 126.75 _cell.length_c 124.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 303 A ASP 301 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc2 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A OD2 ASP 307 A ASP 305 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc4 A OD2 ASP 307 A ASP 305 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 A OG1 THR 450 A THR 448 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc6 B MG MG . A MG 601 1_555 E O22 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.65 ? metalc ? metalc7 B MG MG . A MG 601 1_555 G O3 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.42 ? metalc ? metalc8 C MG MG . A MG 602 1_555 E O18 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 C MG MG . A MG 602 1_555 E O19 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.956 ? metalc ? metalc10 C MG MG . A MG 602 1_555 G O5 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.09 ? metalc ? metalc11 C MG MG . A MG 602 1_555 G O3 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.937 ? metalc ? metalc12 C MG MG . A MG 602 1_555 G O4 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.982 ? metalc ? metalc13 D MG MG . A MG 603 1_555 E O23 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.601 ? metalc ? metalc14 D MG MG . A MG 603 1_555 G O1 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.794 ? # _chem_comp.formula 'C16 H25 N O7 P2' _chem_comp.formula_weight 405.32 _chem_comp.id A4S _chem_comp.mon_nstd_flag . _chem_comp.name '(2E,6E)-3,7-dimethyl-8-(phenylamino)octa-2,6-dien-1-yl trihydrogen diphosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'anilinogeranyl diphosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O20 P17 A4S doub 40 n n O18 P17 A4S sing 41 n n P17 O16 A4S sing 42 n n P17 O19 A4S sing 43 n n O23 P21 A4S doub 44 n n O16 C15 A4S sing 45 n n O22 P21 A4S sing 46 n n O19 P21 A4S sing 47 n n P21 O24 A4S sing 48 n n C15 C14 A4S sing 49 n n C25 C13 A4S sing 50 n n C02 C01 A4S doub 51 n y C02 C03 A4S sing 52 n y C14 C13 A4S doub 53 e n C01 C06 A4S sing 54 n y C03 C04 A4S doub 55 n y C13 C12 A4S sing 56 n n C06 N07 A4S sing 57 n n C06 C05 A4S doub 58 n y C04 C05 A4S sing 59 n y C12 C11 A4S sing 60 n n N07 C08 A4S sing 61 n n C11 C10 A4S sing 62 n n C10 C09 A4S doub 63 e n C08 C09 A4S sing 64 n n C09 C26 A4S sing 65 n n C01 H1 A4S sing 66 n n C02 H2 A4S sing 67 n n C03 H3 A4S sing 68 n n C04 H4 A4S sing 69 n n C05 H5 A4S sing 70 n n N07 H6 A4S sing 71 n n C08 H7 A4S sing 72 n n C08 H8 A4S sing 73 n n C10 H10 A4S sing 74 n n C11 H12 A4S sing 75 n n C11 H13 A4S sing 76 n n C12 H14 A4S sing 77 n n C12 H15 A4S sing 78 n n C14 H17 A4S sing 79 n n C15 H19 A4S sing 80 n n C15 H20 A4S sing 81 n n O18 H21 A4S sing 82 n n O22 H22 A4S sing 83 n n O24 H23 A4S sing 84 n n C25 H24 A4S sing 85 n n C25 H25 A4S sing 86 n n C25 H26 A4S sing 87 n n C26 H27 A4S sing 88 n n C26 H28 A4S sing 89 n n C26 H29 A4S sing 90 n n # _atom_sites.entry_id 4RNQ _atom_sites.fract_transf_matrix[1][1] 0.00789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 2 MG MG . D 2 MG A 1 603 3 MG MG . E 3 A4S A 1 604 1 A4S A4S . F 4 1GA A 1 605 2 1GA 1GF . G 5 DPO A 1 606 3 DPO DPO . H 6 ACT A 1 607 550 ACT ACT . I 7 HOH A 1 701 1 HOH HOH . I 7 HOH A 2 702 2 HOH HOH . I 7 HOH A 3 703 3 HOH HOH . I 7 HOH A 4 704 4 HOH HOH . I 7 HOH A 5 705 5 HOH HOH . I 7 HOH A 6 706 6 HOH HOH . I 7 HOH A 7 707 7 HOH HOH . I 7 HOH A 8 708 8 HOH HOH . I 7 HOH A 9 709 9 HOH HOH . I 7 HOH A 10 710 10 HOH HOH . I 7 HOH A 11 711 11 HOH HOH . I 7 HOH A 12 712 12 HOH HOH . I 7 HOH A 13 713 13 HOH HOH . I 7 HOH A 14 714 14 HOH HOH . I 7 HOH A 15 715 15 HOH HOH . I 7 HOH A 16 716 16 HOH HOH . I 7 HOH A 17 717 17 HOH HOH . I 7 HOH A 18 718 18 HOH HOH . I 7 HOH A 19 719 19 HOH HOH . I 7 HOH A 20 720 20 HOH HOH . I 7 HOH A 21 721 21 HOH HOH . I 7 HOH A 22 722 22 HOH HOH . I 7 HOH A 23 723 23 HOH HOH . I 7 HOH A 24 724 24 HOH HOH . I 7 HOH A 25 725 25 HOH HOH . I 7 HOH A 26 726 26 HOH HOH . I 7 HOH A 27 727 27 HOH HOH . I 7 HOH A 28 728 28 HOH HOH . I 7 HOH A 29 729 29 HOH HOH . I 7 HOH A 30 730 30 HOH HOH . I 7 HOH A 31 731 31 HOH HOH . I 7 HOH A 32 732 32 HOH HOH . I 7 HOH A 33 733 33 HOH HOH . I 7 HOH A 34 734 34 HOH HOH . I 7 HOH A 35 735 35 HOH HOH . I 7 HOH A 36 736 36 HOH HOH . I 7 HOH A 37 737 37 HOH HOH . I 7 HOH A 38 738 38 HOH HOH . I 7 HOH A 39 739 39 HOH HOH . I 7 HOH A 40 740 40 HOH HOH . I 7 HOH A 41 741 41 HOH HOH . I 7 HOH A 42 742 42 HOH HOH . I 7 HOH A 43 743 43 HOH HOH . I 7 HOH A 44 744 44 HOH HOH . I 7 HOH A 45 745 45 HOH HOH . I 7 HOH A 46 746 46 HOH HOH . I 7 HOH A 47 747 47 HOH HOH . I 7 HOH A 48 748 48 HOH HOH . I 7 HOH A 49 749 49 HOH HOH . I 7 HOH A 50 750 50 HOH HOH . I 7 HOH A 51 751 51 HOH HOH . I 7 HOH A 52 752 52 HOH HOH . I 7 HOH A 53 753 53 HOH HOH . I 7 HOH A 54 754 54 HOH HOH . I 7 HOH A 55 755 55 HOH HOH . I 7 HOH A 56 756 56 HOH HOH . I 7 HOH A 57 757 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 A4S . A . E 3 25.51 76.915 13.389 0.45 79.06 ? C01 A4S 604 A 1 HETATM 2 C C02 A4S . A . E 3 26.117 78.037 12.817 0.45 79.76 ? C02 A4S 604 A 1 HETATM 3 C C03 A4S . A . E 3 26.217 79.245 13.523 0.45 79.39 ? C03 A4S 604 A 1 HETATM 4 C C04 A4S . A . E 3 25.802 79.291 14.823 0.45 78.59 ? C04 A4S 604 A 1 HETATM 5 C C05 A4S . A . E 3 25.286 78.156 15.435 0.45 78.33 ? C05 A4S 604 A 1 HETATM 6 C C06 A4S . A . E 3 25.086 76.97 14.694 0.45 78.22 ? C06 A4S 604 A 1 HETATM 7 N N07 A4S . A . E 3 24.385 75.814 15.288 0.45 76.39 ? N07 A4S 604 A 1 HETATM 8 C C08 A4S . A . E 3 23.927 75.845 16.66 0.45 75.74 ? C08 A4S 604 A 1 HETATM 9 C C09 A4S . A . E 3 22.68 76.794 16.861 0.45 81.23 ? C09 A4S 604 A 1 HETATM 10 C C10 A4S . A . E 3 21.68 77.001 15.912 0.45 75.35 ? C10 A4S 604 A 1 HETATM 11 C C11 A4S . A . E 3 21.083 78.396 15.672 0.45 72.06 ? C11 A4S 604 A 1 HETATM 12 C C12 A4S . A . E 3 22.111 79.422 15.113 0.45 78.04 ? C12 A4S 604 A 1 HETATM 13 C C13 A4S . A . E 3 22.254 79.409 13.575 0.45 81.29 ? C13 A4S 604 A 1 HETATM 14 C C14 A4S . A . E 3 22.946 80.417 12.95 0.45 86.99 ? C14 A4S 604 A 1 HETATM 15 C C15 A4S . A . E 3 23.507 80.175 11.55 0.45 106.39 ? C15 A4S 604 A 1 HETATM 16 O O16 A4S . A . E 3 22.596 80.494 10.55 0.45 128.25 ? O16 A4S 604 A 1 HETATM 17 P P17 A4S . A . E 3 22.929 81.883 9.794 0.45 162.94 ? P17 A4S 604 A 1 HETATM 18 O O18 A4S . A . E 3 21.718 82.327 8.962 0.45 163.44 ? O18 A4S 604 A 1 HETATM 19 O O19 A4S . A . E 3 23.277 82.884 10.998 0.45 168.33 ? O19 A4S 604 A 1 HETATM 20 O O20 A4S . A . E 3 24.099 81.637 8.88 0.45 162.9 ? O20 A4S 604 A 1 HETATM 21 P P21 A4S . A . E 3 23.818 84.411 11.087 0.45 164.36 ? P21 A4S 604 A 1 HETATM 22 O O22 A4S . A . E 3 22.723 85.406 10.983 0.45 164.19 ? O22 A4S 604 A 1 HETATM 23 O O23 A4S . A . E 3 24.977 84.656 10.023 0.45 162.73 ? O23 A4S 604 A 1 HETATM 24 O O24 A4S . A . E 3 24.301 84.711 12.505 0.45 163.56 ? O24 A4S 604 A 1 HETATM 25 C C25 A4S . A . E 3 22.19 78.08 12.771 0.45 82.78 ? C25 A4S 604 A 1 HETATM 26 C C26 A4S . A . E 3 22.505 77.558 18.177 0.45 82.85 ? C26 A4S 604 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 26 #