data_4RNQ # _model_server_result.job_id PsXFxWq8Rad3HEBcwqF3vA _model_server_result.datetime_utc '2024-11-05 05:28:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":605}' # _entry.id 4RNQ # _exptl.entry_id 4RNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 227.345 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Geraniline _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RNQ _cell.length_a 126.75 _cell.length_b 126.75 _cell.length_c 124.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 303 A ASP 301 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? metalc ? metalc2 A OD1 ASP 303 A ASP 301 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 A OD2 ASP 307 A ASP 305 1_555 B MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.993 ? metalc ? metalc4 A OD2 ASP 307 A ASP 305 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc5 A OG1 THR 450 A THR 448 1_555 D MG MG . A MG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? metalc ? metalc6 B MG MG . A MG 601 1_555 E O22 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.65 ? metalc ? metalc7 B MG MG . A MG 601 1_555 G O3 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.42 ? metalc ? metalc8 C MG MG . A MG 602 1_555 E O18 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.089 ? metalc ? metalc9 C MG MG . A MG 602 1_555 E O19 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.956 ? metalc ? metalc10 C MG MG . A MG 602 1_555 G O5 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.09 ? metalc ? metalc11 C MG MG . A MG 602 1_555 G O3 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.937 ? metalc ? metalc12 C MG MG . A MG 602 1_555 G O4 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.982 ? metalc ? metalc13 D MG MG . A MG 603 1_555 E O23 A4S . A A4S 604 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.601 ? metalc ? metalc14 D MG MG . A MG 603 1_555 G O1 DPO . A DPO 606 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.794 ? # _chem_comp.formula 'C16 H21 N' _chem_comp.formula_weight 227.345 _chem_comp.id 1GA _chem_comp.mon_nstd_flag . _chem_comp.name Geraniline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms (4E,8E)-4,8-dimethyl-2-azabicyclo[9.2.2]pentadeca-1(13),4,8,11,14-pentaene # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C11 1GA sing 1 n n C10 C11 1GA sing 2 n n C10 N09 1GA sing 3 n n C11 C12 1GA doub 4 e n N09 C08 1GA sing 5 n n C07 C08 1GA doub 6 n y C07 C06 1GA sing 7 n y C08 C16 1GA sing 8 n y C12 C13 1GA sing 9 n n C14 C13 1GA sing 10 n n C14 C02 1GA sing 11 n n C06 C05 1GA doub 12 n y C16 C17 1GA doub 13 n y C03 C02 1GA doub 14 e n C03 C04 1GA sing 15 n n C02 C01 1GA sing 16 n n C05 C17 1GA sing 17 n y C05 C04 1GA sing 18 n n C01 H1 1GA sing 19 n n C01 H2 1GA sing 20 n n C01 H3 1GA sing 21 n n C03 H5 1GA sing 22 n n C04 H7 1GA sing 23 n n C04 H8 1GA sing 24 n n C06 H9 1GA sing 25 n n C07 H10 1GA sing 26 n n N09 H11 1GA sing 27 n n C10 H12 1GA sing 28 n n C10 H13 1GA sing 29 n n C12 H15 1GA sing 30 n n C13 H17 1GA sing 31 n n C13 H18 1GA sing 32 n n C14 H19 1GA sing 33 n n C14 H20 1GA sing 34 n n C15 H21 1GA sing 35 n n C15 H22 1GA sing 36 n n C15 H23 1GA sing 37 n n C16 H24 1GA sing 38 n n C17 H25 1GA sing 39 n n # _atom_sites.entry_id 4RNQ _atom_sites.fract_transf_matrix[1][1] 0.00789 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00789 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008045 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 601 1 MG MG . C 2 MG A 1 602 2 MG MG . D 2 MG A 1 603 3 MG MG . E 3 A4S A 1 604 1 A4S A4S . F 4 1GA A 1 605 2 1GA 1GF . G 5 DPO A 1 606 3 DPO DPO . H 6 ACT A 1 607 550 ACT ACT . I 7 HOH A 1 701 1 HOH HOH . I 7 HOH A 2 702 2 HOH HOH . I 7 HOH A 3 703 3 HOH HOH . I 7 HOH A 4 704 4 HOH HOH . I 7 HOH A 5 705 5 HOH HOH . I 7 HOH A 6 706 6 HOH HOH . I 7 HOH A 7 707 7 HOH HOH . I 7 HOH A 8 708 8 HOH HOH . I 7 HOH A 9 709 9 HOH HOH . I 7 HOH A 10 710 10 HOH HOH . I 7 HOH A 11 711 11 HOH HOH . I 7 HOH A 12 712 12 HOH HOH . I 7 HOH A 13 713 13 HOH HOH . I 7 HOH A 14 714 14 HOH HOH . I 7 HOH A 15 715 15 HOH HOH . I 7 HOH A 16 716 16 HOH HOH . I 7 HOH A 17 717 17 HOH HOH . I 7 HOH A 18 718 18 HOH HOH . I 7 HOH A 19 719 19 HOH HOH . I 7 HOH A 20 720 20 HOH HOH . I 7 HOH A 21 721 21 HOH HOH . I 7 HOH A 22 722 22 HOH HOH . I 7 HOH A 23 723 23 HOH HOH . I 7 HOH A 24 724 24 HOH HOH . I 7 HOH A 25 725 25 HOH HOH . I 7 HOH A 26 726 26 HOH HOH . I 7 HOH A 27 727 27 HOH HOH . I 7 HOH A 28 728 28 HOH HOH . I 7 HOH A 29 729 29 HOH HOH . I 7 HOH A 30 730 30 HOH HOH . I 7 HOH A 31 731 31 HOH HOH . I 7 HOH A 32 732 32 HOH HOH . I 7 HOH A 33 733 33 HOH HOH . I 7 HOH A 34 734 34 HOH HOH . I 7 HOH A 35 735 35 HOH HOH . I 7 HOH A 36 736 36 HOH HOH . I 7 HOH A 37 737 37 HOH HOH . I 7 HOH A 38 738 38 HOH HOH . I 7 HOH A 39 739 39 HOH HOH . I 7 HOH A 40 740 40 HOH HOH . I 7 HOH A 41 741 41 HOH HOH . I 7 HOH A 42 742 42 HOH HOH . I 7 HOH A 43 743 43 HOH HOH . I 7 HOH A 44 744 44 HOH HOH . I 7 HOH A 45 745 45 HOH HOH . I 7 HOH A 46 746 46 HOH HOH . I 7 HOH A 47 747 47 HOH HOH . I 7 HOH A 48 748 48 HOH HOH . I 7 HOH A 49 749 49 HOH HOH . I 7 HOH A 50 750 50 HOH HOH . I 7 HOH A 51 751 51 HOH HOH . I 7 HOH A 52 752 52 HOH HOH . I 7 HOH A 53 753 53 HOH HOH . I 7 HOH A 54 754 54 HOH HOH . I 7 HOH A 55 755 55 HOH HOH . I 7 HOH A 56 756 56 HOH HOH . I 7 HOH A 57 757 57 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 1GA . B . F 4 23.338 77.154 17.644 0.55 82.68 ? C01 1GA 605 A 1 HETATM 2 C C02 1GA . B . F 4 23.789 76.489 16.38 0.55 78.62 ? C02 1GA 605 A 1 HETATM 3 C C03 1GA . B . F 4 22.866 76.035 15.516 0.55 77.89 ? C03 1GA 605 A 1 HETATM 4 C C04 1GA . B . F 4 21.436 76.553 15.614 0.55 76.42 ? C04 1GA 605 A 1 HETATM 5 C C05 1GA . B . F 4 21.366 77.868 14.925 0.55 74.23 ? C05 1GA 605 A 1 HETATM 6 C C06 1GA . B . F 4 21.645 77.907 13.57 0.55 80.09 ? C06 1GA 605 A 1 HETATM 7 C C07 1GA . B . F 4 22.24 79.028 13.016 0.55 81.1 ? C07 1GA 605 A 1 HETATM 8 C C08 1GA . B . F 4 22.517 80.128 13.808 0.55 80.08 ? C08 1GA 605 A 1 HETATM 9 N N09 1GA . B . F 4 23.555 80.937 13.446 0.55 82.05 ? N09 1GA 605 A 1 HETATM 10 C C10 1GA . B . F 4 24.935 80.941 13.628 0.55 81.9 ? C10 1GA 605 A 1 HETATM 11 C C11 1GA . B . F 4 25.443 79.526 13.63 0.55 78.89 ? C11 1GA 605 A 1 HETATM 12 C C12 1GA . B . F 4 25.345 78.766 14.738 0.55 78.32 ? C12 1GA 605 A 1 HETATM 13 C C13 1GA . B . F 4 25.573 77.27 14.653 0.55 78.3 ? C13 1GA 605 A 1 HETATM 14 C C14 1GA . B . F 4 25.239 76.608 15.972 0.55 76.97 ? C14 1GA 605 A 1 HETATM 15 C C15 1GA . B . F 4 26.144 78.999 12.416 0.55 79.45 ? C15 1GA 605 A 1 HETATM 16 C C16 1GA . B . F 4 22.094 80.145 15.131 0.55 76.87 ? C16 1GA 605 A 1 HETATM 17 C C17 1GA . B . F 4 21.48 79.028 15.677 0.55 74.21 ? C17 1GA 605 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 17 #