data_4RNR # _model_server_result.job_id s_z3CZJHPpKaOTUAo9RymA _model_server_result.datetime_utc '2024-11-05 00:56:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rnr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 4RNR # _exptl.entry_id 4RNR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RNR _cell.length_a 67.021 _cell.length_b 69.052 _cell.length_c 272.236 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 97 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 156 A CYS 140 1_555 A SG CYS 212 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 22 B CYS 23 1_555 B SG CYS 90 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 B SG CYS 138 B CYS 134 1_555 B SG CYS 197 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 C SG CYS 22 C CYS 22 1_555 C SG CYS 97 C CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 C SG CYS 156 C CYS 140 1_555 C SG CYS 212 C CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 D SG CYS 22 D CYS 23 1_555 D SG CYS 90 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? disulf ? disulf8 D SG CYS 138 D CYS 134 1_555 D SG CYS 197 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 86 A ASN 82 1_555 E C1 NAG . A NAG 301 1_555 B ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale2 B ND2 ASN 23 B ASN 24 1_555 F C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.475 ? covale ? covale3 C ND2 ASN 86 C ASN 82 1_555 G C1 NAG . C NAG 301 1_555 B ? ? ? ? ? ? ? ? ? ? ? 1.485 ? covale ? covale4 D ND2 ASN 23 D ASN 24 1_555 H C1 NAG . D NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.455 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 216 n n C1 O1 NAG sing 217 n n C1 O5 NAG sing 218 n n C1 H1 NAG sing 219 n n C2 C3 NAG sing 220 n n C2 N2 NAG sing 221 n n C2 H2 NAG sing 222 n n C3 C4 NAG sing 223 n n C3 O3 NAG sing 224 n n C3 H3 NAG sing 225 n n C4 C5 NAG sing 226 n n C4 O4 NAG sing 227 n n C4 H4 NAG sing 228 n n C5 C6 NAG sing 229 n n C5 O5 NAG sing 230 n n C5 H5 NAG sing 231 n n C6 O6 NAG sing 232 n n C6 H61 NAG sing 233 n n C6 H62 NAG sing 234 n n C7 C8 NAG sing 235 n n C7 N2 NAG sing 236 n n C7 O7 NAG doub 237 n n C8 H81 NAG sing 238 n n C8 H82 NAG sing 239 n n C8 H83 NAG sing 240 n n N2 HN2 NAG sing 241 n n O1 HO1 NAG sing 242 n n O3 HO3 NAG sing 243 n n O4 HO4 NAG sing 244 n n O6 HO6 NAG sing 245 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4RNR _atom_sites.fract_transf_matrix[1][1] 0.014921 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 301 1 NAG NAG . F 3 NAG B 1 301 2 NAG NAG . G 3 NAG C 1 301 4 NAG NAG . H 3 NAG D 1 301 3 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . H 3 -3.198 -20.51 43.759 1 116.42 ? C1 NAG 301 D 1 HETATM 2 C C2 NAG . . . H 3 -2.708 -19.212 43.128 1 124.64 ? C2 NAG 301 D 1 HETATM 3 C C3 NAG . . . H 3 -1.194 -19.231 42.942 1 132.06 ? C3 NAG 301 D 1 HETATM 4 C C4 NAG . . . H 3 -0.491 -19.664 44.223 1 124.51 ? C4 NAG 301 D 1 HETATM 5 C C5 NAG . . . H 3 -1.114 -20.936 44.785 1 121.5 ? C5 NAG 301 D 1 HETATM 6 C C6 NAG . . . H 3 -0.461 -21.328 46.105 1 110.67 ? C6 NAG 301 D 1 HETATM 7 C C7 NAG . . . H 3 -2.936 -18.079 40.994 1 130.25 ? C7 NAG 301 D 1 HETATM 8 C C8 NAG . . . H 3 -3.864 -16.922 40.773 1 126.89 ? C8 NAG 301 D 1 HETATM 9 N N2 NAG . . . H 3 -3.361 -19.002 41.851 1 124.71 ? N2 NAG 301 D 1 HETATM 10 O O3 NAG . . . H 3 -0.742 -17.925 42.569 1 140.82 ? O3 NAG 301 D 1 HETATM 11 O O4 NAG . . . H 3 0.897 -19.891 43.953 1 116.74 ? O4 NAG 301 D 1 HETATM 12 O O5 NAG . . . H 3 -2.512 -20.73 44.988 1 120.71 ? O5 NAG 301 D 1 HETATM 13 O O6 NAG . . . H 3 -0.101 -22.714 46.066 1 103.33 ? O6 NAG 301 D 1 HETATM 14 O O7 NAG . . . H 3 -1.861 -18.166 40.425 1 137.84 ? O7 NAG 301 D 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #