data_4RNU
#
_model_server_result.job_id            VIxqFeYJGmuf7k-FKdpQKA 
_model_server_result.datetime_utc      '2024-11-05 01:21:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rnu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":501}' 
#
_entry.id    4RNU 
#
_exptl.entry_id    4RNU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         69.32 
_cell.angle_beta          82.56 
_cell.angle_gamma         90.02 
_cell.entry_id            4RNU 
_cell.length_a            45.662 
_cell.length_b            87.642 
_cell.length_c            113.572 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RNU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 I N N 
? 2 K N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 70 n n 
N1 C10 FMN doub 71 n n 
C2 O2 FMN doub 72 n n 
C2 N3 FMN sing 73 n n 
N3 C4 FMN sing 74 n n 
N3 HN3 FMN sing 75 n n 
C4 O4 FMN doub 76 n n 
C4 C4A FMN sing 77 n n 
C4A N5 FMN doub 78 n n 
C4A C10 FMN sing 79 n n 
N5 C5A FMN sing 80 n n 
C5A C6 FMN doub 81 n y 
C5A C9A FMN sing 82 n y 
C6 C7 FMN sing 83 n y 
C6 H6 FMN sing 84 n n 
C7 C7M FMN sing 85 n n 
C7 C8 FMN doub 86 n y 
C7M HM71 FMN sing 87 n n 
C7M HM72 FMN sing 88 n n 
C7M HM73 FMN sing 89 n n 
C8 C8M FMN sing 90 n n 
C8 C9 FMN sing 91 n y 
C8M HM81 FMN sing 92 n n 
C8M HM82 FMN sing 93 n n 
C8M HM83 FMN sing 94 n n 
C9 C9A FMN doub 95 n y 
C9 H9 FMN sing 96 n n 
C9A N10 FMN sing 97 n n 
N10 C10 FMN sing 98 n n 
N10 C1' FMN sing 99 n n 
C1' C2' FMN sing 100 n n 
C1' "H1'1" FMN sing 101 n n 
C1' "H1'2" FMN sing 102 n n 
C2' O2' FMN sing 103 n n 
C2' C3' FMN sing 104 n n 
C2' H2' FMN sing 105 n n 
O2' HO2' FMN sing 106 n n 
C3' O3' FMN sing 107 n n 
C3' C4' FMN sing 108 n n 
C3' H3' FMN sing 109 n n 
O3' HO3' FMN sing 110 n n 
C4' O4' FMN sing 111 n n 
C4' C5' FMN sing 112 n n 
C4' H4' FMN sing 113 n n 
O4' HO4' FMN sing 114 n n 
C5' O5' FMN sing 115 n n 
C5' "H5'1" FMN sing 116 n n 
C5' "H5'2" FMN sing 117 n n 
O5' P FMN sing 118 n n 
P O1P FMN doub 119 n n 
P O2P FMN sing 120 n n 
P O3P FMN sing 121 n n 
O2P HOP2 FMN sing 122 n n 
O3P HOP3 FMN sing 123 n n 
#
_atom_sites.entry_id                     4RNU 
_atom_sites.fract_transf_matrix[1][1]    0.0219 
_atom_sites.fract_transf_matrix[1][2]    0.000008 
_atom_sites.fract_transf_matrix[1][3]    -0.003065 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01141 
_atom_sites.fract_transf_matrix[2][3]    -0.00435 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009503 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 FMN A 1 501 401 FMN FMN . 
F 3 PO4 A 1 502 2 PO4 PO4 . 
G 2 FMN B 1 501 401 FMN FMN . 
H 3 PO4 B 1 502 1 PO4 PO4 . 
I 2 FMN C 1 501 401 FMN FMN . 
J 3 PO4 C 1 502 3 PO4 PO4 . 
K 2 FMN D 1 501 401 FMN FMN . 
L 3 PO4 D 1 502 4 PO4 PO4 . 
M 4 HOH A 1 601 8 HOH HOH . 
M 4 HOH A 2 602 15 HOH HOH . 
M 4 HOH A 3 603 24 HOH HOH . 
M 4 HOH A 4 604 25 HOH HOH . 
M 4 HOH A 5 605 26 HOH HOH . 
M 4 HOH A 6 606 29 HOH HOH . 
M 4 HOH A 7 607 30 HOH HOH . 
M 4 HOH A 8 608 36 HOH HOH . 
M 4 HOH A 9 609 37 HOH HOH . 
M 4 HOH A 10 610 38 HOH HOH . 
M 4 HOH A 11 611 40 HOH HOH . 
M 4 HOH A 12 612 43 HOH HOH . 
M 4 HOH A 13 613 51 HOH HOH . 
M 4 HOH A 14 614 52 HOH HOH . 
M 4 HOH A 15 615 55 HOH HOH . 
M 4 HOH A 16 616 56 HOH HOH . 
M 4 HOH A 17 617 57 HOH HOH . 
M 4 HOH A 18 618 61 HOH HOH . 
M 4 HOH A 19 619 69 HOH HOH . 
M 4 HOH A 20 620 70 HOH HOH . 
M 4 HOH A 21 621 71 HOH HOH . 
M 4 HOH A 22 622 73 HOH HOH . 
M 4 HOH A 23 623 75 HOH HOH . 
M 4 HOH A 24 624 85 HOH HOH . 
M 4 HOH A 25 625 87 HOH HOH . 
M 4 HOH A 26 626 88 HOH HOH . 
M 4 HOH A 27 627 98 HOH HOH . 
M 4 HOH A 28 628 101 HOH HOH . 
M 4 HOH A 29 629 102 HOH HOH . 
M 4 HOH A 30 630 106 HOH HOH . 
M 4 HOH A 31 631 108 HOH HOH . 
M 4 HOH A 32 632 109 HOH HOH . 
M 4 HOH A 33 633 111 HOH HOH . 
M 4 HOH A 34 634 112 HOH HOH . 
M 4 HOH A 35 635 113 HOH HOH . 
M 4 HOH A 36 636 114 HOH HOH . 
M 4 HOH A 37 637 116 HOH HOH . 
M 4 HOH A 38 638 117 HOH HOH . 
M 4 HOH A 39 639 121 HOH HOH . 
M 4 HOH A 40 640 124 HOH HOH . 
N 4 HOH B 1 601 2 HOH HOH . 
N 4 HOH B 2 602 3 HOH HOH . 
N 4 HOH B 3 603 10 HOH HOH . 
N 4 HOH B 4 604 13 HOH HOH . 
N 4 HOH B 5 605 17 HOH HOH . 
N 4 HOH B 6 606 20 HOH HOH . 
N 4 HOH B 7 607 23 HOH HOH . 
N 4 HOH B 8 608 35 HOH HOH . 
N 4 HOH B 9 609 41 HOH HOH . 
N 4 HOH B 10 610 47 HOH HOH . 
N 4 HOH B 11 611 62 HOH HOH . 
N 4 HOH B 12 612 65 HOH HOH . 
N 4 HOH B 13 613 66 HOH HOH . 
N 4 HOH B 14 614 74 HOH HOH . 
N 4 HOH B 15 615 77 HOH HOH . 
N 4 HOH B 16 616 79 HOH HOH . 
N 4 HOH B 17 617 81 HOH HOH . 
N 4 HOH B 18 618 84 HOH HOH . 
N 4 HOH B 19 619 86 HOH HOH . 
N 4 HOH B 20 620 89 HOH HOH . 
N 4 HOH B 21 621 90 HOH HOH . 
N 4 HOH B 22 622 91 HOH HOH . 
N 4 HOH B 23 623 94 HOH HOH . 
N 4 HOH B 24 624 107 HOH HOH . 
N 4 HOH B 25 625 115 HOH HOH . 
N 4 HOH B 26 626 128 HOH HOH . 
O 4 HOH C 1 601 6 HOH HOH . 
O 4 HOH C 2 602 12 HOH HOH . 
O 4 HOH C 3 603 14 HOH HOH . 
O 4 HOH C 4 604 16 HOH HOH . 
O 4 HOH C 5 605 19 HOH HOH . 
O 4 HOH C 6 606 22 HOH HOH . 
O 4 HOH C 7 607 27 HOH HOH . 
O 4 HOH C 8 608 28 HOH HOH . 
O 4 HOH C 9 609 31 HOH HOH . 
O 4 HOH C 10 610 44 HOH HOH . 
O 4 HOH C 11 611 46 HOH HOH . 
O 4 HOH C 12 612 48 HOH HOH . 
O 4 HOH C 13 613 49 HOH HOH . 
O 4 HOH C 14 614 50 HOH HOH . 
O 4 HOH C 15 615 53 HOH HOH . 
O 4 HOH C 16 616 54 HOH HOH . 
O 4 HOH C 17 617 63 HOH HOH . 
O 4 HOH C 18 618 64 HOH HOH . 
O 4 HOH C 19 619 76 HOH HOH . 
O 4 HOH C 20 620 78 HOH HOH . 
O 4 HOH C 21 621 80 HOH HOH . 
O 4 HOH C 22 622 82 HOH HOH . 
O 4 HOH C 23 623 103 HOH HOH . 
O 4 HOH C 24 624 105 HOH HOH . 
O 4 HOH C 25 625 122 HOH HOH . 
O 4 HOH C 26 626 123 HOH HOH . 
P 4 HOH D 1 601 1 HOH HOH . 
P 4 HOH D 2 602 5 HOH HOH . 
P 4 HOH D 3 603 7 HOH HOH . 
P 4 HOH D 4 604 9 HOH HOH . 
P 4 HOH D 5 605 11 HOH HOH . 
P 4 HOH D 6 606 18 HOH HOH . 
P 4 HOH D 7 607 21 HOH HOH . 
P 4 HOH D 8 608 32 HOH HOH . 
P 4 HOH D 9 609 33 HOH HOH . 
P 4 HOH D 10 610 34 HOH HOH . 
P 4 HOH D 11 611 58 HOH HOH . 
P 4 HOH D 12 612 60 HOH HOH . 
P 4 HOH D 13 613 67 HOH HOH . 
P 4 HOH D 14 614 68 HOH HOH . 
P 4 HOH D 15 615 72 HOH HOH . 
P 4 HOH D 16 616 83 HOH HOH . 
P 4 HOH D 17 617 96 HOH HOH . 
P 4 HOH D 18 618 97 HOH HOH . 
P 4 HOH D 19 619 99 HOH HOH . 
P 4 HOH D 20 620 104 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . I 2 71.738 28.266 70.426 1 83.61 ? N1 FMN 501 C 1 
HETATM 2 C C2 FMN . . . I 2 70.893 28.145 71.511 1 85.69 ? C2 FMN 501 C 1 
HETATM 3 O O2 FMN . . . I 2 70.509 27.034 71.872 1 85.17 ? O2 FMN 501 C 1 
HETATM 4 N N3 FMN . . . I 2 70.47 29.268 72.192 1 89.41 ? N3 FMN 501 C 1 
HETATM 5 C C4 FMN . . . I 2 70.894 30.517 71.792 1 90.58 ? C4 FMN 501 C 1 
HETATM 6 O O4 FMN . . . I 2 70.517 31.515 72.402 1 93.72 ? O4 FMN 501 C 1 
HETATM 7 C C4A FMN . . . I 2 71.747 30.645 70.702 1 86.12 ? C4A FMN 501 C 1 
HETATM 8 N N5 FMN . . . I 2 72.172 31.894 70.3 1 84.89 ? N5 FMN 501 C 1 
HETATM 9 C C5A FMN . . . I 2 73.018 32.019 69.217 1 85.73 ? C5A FMN 501 C 1 
HETATM 10 C C6 FMN . . . I 2 73.446 33.279 68.814 1 86.69 ? C6 FMN 501 C 1 
HETATM 11 C C7 FMN . . . I 2 74.299 33.411 67.724 1 86.76 ? C7 FMN 501 C 1 
HETATM 12 C C7M FMN . . . I 2 74.758 34.773 67.293 1 86.58 ? C7M FMN 501 C 1 
HETATM 13 C C8 FMN . . . I 2 74.723 32.28 67.036 1 86.9 ? C8 FMN 501 C 1 
HETATM 14 C C8M FMN . . . I 2 75.644 32.411 65.859 1 87.82 ? C8M FMN 501 C 1 
HETATM 15 C C9 FMN . . . I 2 74.296 31.021 67.442 1 86.87 ? C9 FMN 501 C 1 
HETATM 16 C C9A FMN . . . I 2 73.442 30.886 68.532 1 86.06 ? C9A FMN 501 C 1 
HETATM 17 N N10 FMN . . . I 2 73.014 29.634 68.933 1 84.63 ? N10 FMN 501 C 1 
HETATM 18 C C10 FMN . . . I 2 72.17 29.512 70.019 1 83.83 ? C10 FMN 501 C 1 
HETATM 19 C C1' FMN . . . I 2 73.468 28.406 68.198 1 84.79 ? C1' FMN 501 C 1 
HETATM 20 C C2' FMN . . . I 2 72.504 28.093 67.056 1 84.28 ? C2' FMN 501 C 1 
HETATM 21 O O2' FMN . . . I 2 71.354 27.459 67.569 1 75.7 ? O2' FMN 501 C 1 
HETATM 22 C C3' FMN . . . I 2 73.165 27.196 66.014 1 92.36 ? C3' FMN 501 C 1 
HETATM 23 O O3' FMN . . . I 2 73.559 25.982 66.614 1 94.02 ? O3' FMN 501 C 1 
HETATM 24 C C4' FMN . . . I 2 74.381 27.896 65.416 1 96.08 ? C4' FMN 501 C 1 
HETATM 25 O O4' FMN . . . I 2 73.998 29.165 64.935 1 96.5 ? O4' FMN 501 C 1 
HETATM 26 C C5' FMN . . . I 2 75.01 27.101 64.277 1 97.22 ? C5' FMN 501 C 1 
HETATM 27 O O5' FMN . . . I 2 74.091 26.964 63.216 1 98.22 ? O5' FMN 501 C 1 
HETATM 28 P P FMN . . . I 2 74.61 26.943 61.691 1 75.51 ? P FMN 501 C 1 
HETATM 29 O O1P FMN . . . I 2 75.839 26.069 61.614 1 77.7 ? O1P FMN 501 C 1 
HETATM 30 O O2P FMN . . . I 2 74.95 28.345 61.249 1 74.14 ? O2P FMN 501 C 1 
HETATM 31 O O3P FMN . . . I 2 73.533 26.378 60.796 1 77.45 ? O3P FMN 501 C 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#