data_4RNU # _model_server_result.job_id iIy4X398ZDezV7YHKNWbFg _model_server_result.datetime_utc '2024-11-05 01:27:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 4RNU # _exptl.entry_id 4RNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.32 _cell.angle_beta 82.56 _cell.angle_gamma 90.02 _cell.entry_id 4RNU _cell.length_a 45.662 _cell.length_b 87.642 _cell.length_c 113.572 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 70 n n N1 C10 FMN doub 71 n n C2 O2 FMN doub 72 n n C2 N3 FMN sing 73 n n N3 C4 FMN sing 74 n n N3 HN3 FMN sing 75 n n C4 O4 FMN doub 76 n n C4 C4A FMN sing 77 n n C4A N5 FMN doub 78 n n C4A C10 FMN sing 79 n n N5 C5A FMN sing 80 n n C5A C6 FMN doub 81 n y C5A C9A FMN sing 82 n y C6 C7 FMN sing 83 n y C6 H6 FMN sing 84 n n C7 C7M FMN sing 85 n n C7 C8 FMN doub 86 n y C7M HM71 FMN sing 87 n n C7M HM72 FMN sing 88 n n C7M HM73 FMN sing 89 n n C8 C8M FMN sing 90 n n C8 C9 FMN sing 91 n y C8M HM81 FMN sing 92 n n C8M HM82 FMN sing 93 n n C8M HM83 FMN sing 94 n n C9 C9A FMN doub 95 n y C9 H9 FMN sing 96 n n C9A N10 FMN sing 97 n n N10 C10 FMN sing 98 n n N10 C1' FMN sing 99 n n C1' C2' FMN sing 100 n n C1' "H1'1" FMN sing 101 n n C1' "H1'2" FMN sing 102 n n C2' O2' FMN sing 103 n n C2' C3' FMN sing 104 n n C2' H2' FMN sing 105 n n O2' HO2' FMN sing 106 n n C3' O3' FMN sing 107 n n C3' C4' FMN sing 108 n n C3' H3' FMN sing 109 n n O3' HO3' FMN sing 110 n n C4' O4' FMN sing 111 n n C4' C5' FMN sing 112 n n C4' H4' FMN sing 113 n n O4' HO4' FMN sing 114 n n C5' O5' FMN sing 115 n n C5' "H5'1" FMN sing 116 n n C5' "H5'2" FMN sing 117 n n O5' P FMN sing 118 n n P O1P FMN doub 119 n n P O2P FMN sing 120 n n P O3P FMN sing 121 n n O2P HOP2 FMN sing 122 n n O3P HOP3 FMN sing 123 n n # _atom_sites.entry_id 4RNU _atom_sites.fract_transf_matrix[1][1] 0.0219 _atom_sites.fract_transf_matrix[1][2] 0.000008 _atom_sites.fract_transf_matrix[1][3] -0.003065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01141 _atom_sites.fract_transf_matrix[2][3] -0.00435 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 401 FMN FMN . F 3 PO4 A 1 502 2 PO4 PO4 . G 2 FMN B 1 501 401 FMN FMN . H 3 PO4 B 1 502 1 PO4 PO4 . I 2 FMN C 1 501 401 FMN FMN . J 3 PO4 C 1 502 3 PO4 PO4 . K 2 FMN D 1 501 401 FMN FMN . L 3 PO4 D 1 502 4 PO4 PO4 . M 4 HOH A 1 601 8 HOH HOH . M 4 HOH A 2 602 15 HOH HOH . M 4 HOH A 3 603 24 HOH HOH . M 4 HOH A 4 604 25 HOH HOH . M 4 HOH A 5 605 26 HOH HOH . M 4 HOH A 6 606 29 HOH HOH . M 4 HOH A 7 607 30 HOH HOH . M 4 HOH A 8 608 36 HOH HOH . M 4 HOH A 9 609 37 HOH HOH . M 4 HOH A 10 610 38 HOH HOH . M 4 HOH A 11 611 40 HOH HOH . M 4 HOH A 12 612 43 HOH HOH . M 4 HOH A 13 613 51 HOH HOH . M 4 HOH A 14 614 52 HOH HOH . M 4 HOH A 15 615 55 HOH HOH . M 4 HOH A 16 616 56 HOH HOH . M 4 HOH A 17 617 57 HOH HOH . M 4 HOH A 18 618 61 HOH HOH . M 4 HOH A 19 619 69 HOH HOH . M 4 HOH A 20 620 70 HOH HOH . M 4 HOH A 21 621 71 HOH HOH . M 4 HOH A 22 622 73 HOH HOH . M 4 HOH A 23 623 75 HOH HOH . M 4 HOH A 24 624 85 HOH HOH . M 4 HOH A 25 625 87 HOH HOH . M 4 HOH A 26 626 88 HOH HOH . M 4 HOH A 27 627 98 HOH HOH . M 4 HOH A 28 628 101 HOH HOH . M 4 HOH A 29 629 102 HOH HOH . M 4 HOH A 30 630 106 HOH HOH . M 4 HOH A 31 631 108 HOH HOH . M 4 HOH A 32 632 109 HOH HOH . M 4 HOH A 33 633 111 HOH HOH . M 4 HOH A 34 634 112 HOH HOH . M 4 HOH A 35 635 113 HOH HOH . M 4 HOH A 36 636 114 HOH HOH . M 4 HOH A 37 637 116 HOH HOH . M 4 HOH A 38 638 117 HOH HOH . M 4 HOH A 39 639 121 HOH HOH . M 4 HOH A 40 640 124 HOH HOH . N 4 HOH B 1 601 2 HOH HOH . N 4 HOH B 2 602 3 HOH HOH . N 4 HOH B 3 603 10 HOH HOH . N 4 HOH B 4 604 13 HOH HOH . N 4 HOH B 5 605 17 HOH HOH . N 4 HOH B 6 606 20 HOH HOH . N 4 HOH B 7 607 23 HOH HOH . N 4 HOH B 8 608 35 HOH HOH . N 4 HOH B 9 609 41 HOH HOH . N 4 HOH B 10 610 47 HOH HOH . N 4 HOH B 11 611 62 HOH HOH . N 4 HOH B 12 612 65 HOH HOH . N 4 HOH B 13 613 66 HOH HOH . N 4 HOH B 14 614 74 HOH HOH . N 4 HOH B 15 615 77 HOH HOH . N 4 HOH B 16 616 79 HOH HOH . N 4 HOH B 17 617 81 HOH HOH . N 4 HOH B 18 618 84 HOH HOH . N 4 HOH B 19 619 86 HOH HOH . N 4 HOH B 20 620 89 HOH HOH . N 4 HOH B 21 621 90 HOH HOH . N 4 HOH B 22 622 91 HOH HOH . N 4 HOH B 23 623 94 HOH HOH . N 4 HOH B 24 624 107 HOH HOH . N 4 HOH B 25 625 115 HOH HOH . N 4 HOH B 26 626 128 HOH HOH . O 4 HOH C 1 601 6 HOH HOH . O 4 HOH C 2 602 12 HOH HOH . O 4 HOH C 3 603 14 HOH HOH . O 4 HOH C 4 604 16 HOH HOH . O 4 HOH C 5 605 19 HOH HOH . O 4 HOH C 6 606 22 HOH HOH . O 4 HOH C 7 607 27 HOH HOH . O 4 HOH C 8 608 28 HOH HOH . O 4 HOH C 9 609 31 HOH HOH . O 4 HOH C 10 610 44 HOH HOH . O 4 HOH C 11 611 46 HOH HOH . O 4 HOH C 12 612 48 HOH HOH . O 4 HOH C 13 613 49 HOH HOH . O 4 HOH C 14 614 50 HOH HOH . O 4 HOH C 15 615 53 HOH HOH . O 4 HOH C 16 616 54 HOH HOH . O 4 HOH C 17 617 63 HOH HOH . O 4 HOH C 18 618 64 HOH HOH . O 4 HOH C 19 619 76 HOH HOH . O 4 HOH C 20 620 78 HOH HOH . O 4 HOH C 21 621 80 HOH HOH . O 4 HOH C 22 622 82 HOH HOH . O 4 HOH C 23 623 103 HOH HOH . O 4 HOH C 24 624 105 HOH HOH . O 4 HOH C 25 625 122 HOH HOH . O 4 HOH C 26 626 123 HOH HOH . P 4 HOH D 1 601 1 HOH HOH . P 4 HOH D 2 602 5 HOH HOH . P 4 HOH D 3 603 7 HOH HOH . P 4 HOH D 4 604 9 HOH HOH . P 4 HOH D 5 605 11 HOH HOH . P 4 HOH D 6 606 18 HOH HOH . P 4 HOH D 7 607 21 HOH HOH . P 4 HOH D 8 608 32 HOH HOH . P 4 HOH D 9 609 33 HOH HOH . P 4 HOH D 10 610 34 HOH HOH . P 4 HOH D 11 611 58 HOH HOH . P 4 HOH D 12 612 60 HOH HOH . P 4 HOH D 13 613 67 HOH HOH . P 4 HOH D 14 614 68 HOH HOH . P 4 HOH D 15 615 72 HOH HOH . P 4 HOH D 16 616 83 HOH HOH . P 4 HOH D 17 617 96 HOH HOH . P 4 HOH D 18 618 97 HOH HOH . P 4 HOH D 19 619 99 HOH HOH . P 4 HOH D 20 620 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . K 2 48.735 47.837 118.399 1 87.17 ? N1 FMN 501 D 1 HETATM 2 C C2 FMN . . . K 2 47.894 47.954 117.311 1 86.77 ? C2 FMN 501 D 1 HETATM 3 O O2 FMN . . . K 2 47.492 49.062 116.961 1 85.77 ? O2 FMN 501 D 1 HETATM 4 N N3 FMN . . . K 2 47.5 46.83 116.615 1 87.29 ? N3 FMN 501 D 1 HETATM 5 C C4 FMN . . . K 2 47.947 45.584 117.003 1 87.57 ? C4 FMN 501 D 1 HETATM 6 O O4 FMN . . . K 2 47.595 44.587 116.379 1 88.19 ? O4 FMN 501 D 1 HETATM 7 C C4A FMN . . . K 2 48.795 45.461 118.097 1 87.32 ? C4A FMN 501 D 1 HETATM 8 N N5 FMN . . . K 2 49.246 44.217 118.49 1 85.94 ? N5 FMN 501 D 1 HETATM 9 C C5A FMN . . . K 2 50.087 44.1 119.578 1 83.63 ? C5A FMN 501 D 1 HETATM 10 C C6 FMN . . . K 2 50.541 42.847 119.973 1 81.96 ? C6 FMN 501 D 1 HETATM 11 C C7 FMN . . . K 2 51.388 42.724 121.068 1 79.97 ? C7 FMN 501 D 1 HETATM 12 C C7M FMN . . . K 2 51.874 41.369 121.489 1 77.07 ? C7M FMN 501 D 1 HETATM 13 C C8 FMN . . . K 2 51.783 43.858 121.769 1 80.72 ? C8 FMN 501 D 1 HETATM 14 C C8M FMN . . . K 2 52.698 43.735 122.952 1 79.27 ? C8M FMN 501 D 1 HETATM 15 C C9 FMN . . . K 2 51.331 45.11 121.372 1 82.42 ? C9 FMN 501 D 1 HETATM 16 C C9A FMN . . . K 2 50.481 45.236 120.278 1 83.63 ? C9A FMN 501 D 1 HETATM 17 N N10 FMN . . . K 2 50.027 46.481 119.884 1 83.65 ? N10 FMN 501 D 1 HETATM 18 C C10 FMN . . . K 2 49.189 46.595 118.795 1 86.93 ? C10 FMN 501 D 1 HETATM 19 C C1' FMN . . . K 2 50.446 47.715 120.629 1 78.55 ? C1' FMN 501 D 1 HETATM 20 C C2' FMN . . . K 2 49.461 48.001 121.759 1 73.17 ? C2' FMN 501 D 1 HETATM 21 O O2' FMN . . . K 2 48.255 48.496 121.223 1 64.4 ? O2' FMN 501 D 1 HETATM 22 C C3' FMN . . . K 2 50.041 49.013 122.74 1 80.92 ? C3' FMN 501 D 1 HETATM 23 O O3' FMN . . . K 2 50.243 50.245 122.084 1 81.7 ? O3' FMN 501 D 1 HETATM 24 C C4' FMN . . . K 2 51.365 48.502 123.296 1 87.78 ? C4' FMN 501 D 1 HETATM 25 O O4' FMN . . . K 2 51.193 47.184 123.766 1 92.34 ? O4' FMN 501 D 1 HETATM 26 C C5' FMN . . . K 2 51.885 49.368 124.437 1 89.42 ? C5' FMN 501 D 1 HETATM 27 O O5' FMN . . . K 2 51.051 49.206 125.562 1 91.42 ? O5' FMN 501 D 1 HETATM 28 P P FMN . . . K 2 51.696 49.005 127.023 1 82.26 ? P FMN 501 D 1 HETATM 29 O O1P FMN . . . K 2 52.559 50.2 127.345 1 82.34 ? O1P FMN 501 D 1 HETATM 30 O O2P FMN . . . K 2 52.543 47.756 127.025 1 83.42 ? O2P FMN 501 D 1 HETATM 31 O O3P FMN . . . K 2 50.599 48.881 128.053 1 82.34 ? O3P FMN 501 D 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #