data_4RNU # _model_server_result.job_id xZTO-XSYuDNqESZ8cGWbUA _model_server_result.datetime_utc '2024-11-05 01:26:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rnu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 4RNU # _exptl.entry_id 4RNU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 69.32 _cell.angle_beta 82.56 _cell.angle_gamma 90.02 _cell.entry_id 4RNU _cell.length_a 45.662 _cell.length_b 87.642 _cell.length_c 113.572 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNU _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 301 n n P O2 PO4 sing 302 n n P O3 PO4 sing 303 n n P O4 PO4 sing 304 n n # _atom_sites.entry_id 4RNU _atom_sites.fract_transf_matrix[1][1] 0.0219 _atom_sites.fract_transf_matrix[1][2] 0.000008 _atom_sites.fract_transf_matrix[1][3] -0.003065 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01141 _atom_sites.fract_transf_matrix[2][3] -0.00435 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 401 FMN FMN . F 3 PO4 A 1 502 2 PO4 PO4 . G 2 FMN B 1 501 401 FMN FMN . H 3 PO4 B 1 502 1 PO4 PO4 . I 2 FMN C 1 501 401 FMN FMN . J 3 PO4 C 1 502 3 PO4 PO4 . K 2 FMN D 1 501 401 FMN FMN . L 3 PO4 D 1 502 4 PO4 PO4 . M 4 HOH A 1 601 8 HOH HOH . M 4 HOH A 2 602 15 HOH HOH . M 4 HOH A 3 603 24 HOH HOH . M 4 HOH A 4 604 25 HOH HOH . M 4 HOH A 5 605 26 HOH HOH . M 4 HOH A 6 606 29 HOH HOH . M 4 HOH A 7 607 30 HOH HOH . M 4 HOH A 8 608 36 HOH HOH . M 4 HOH A 9 609 37 HOH HOH . M 4 HOH A 10 610 38 HOH HOH . M 4 HOH A 11 611 40 HOH HOH . M 4 HOH A 12 612 43 HOH HOH . M 4 HOH A 13 613 51 HOH HOH . M 4 HOH A 14 614 52 HOH HOH . M 4 HOH A 15 615 55 HOH HOH . M 4 HOH A 16 616 56 HOH HOH . M 4 HOH A 17 617 57 HOH HOH . M 4 HOH A 18 618 61 HOH HOH . M 4 HOH A 19 619 69 HOH HOH . M 4 HOH A 20 620 70 HOH HOH . M 4 HOH A 21 621 71 HOH HOH . M 4 HOH A 22 622 73 HOH HOH . M 4 HOH A 23 623 75 HOH HOH . M 4 HOH A 24 624 85 HOH HOH . M 4 HOH A 25 625 87 HOH HOH . M 4 HOH A 26 626 88 HOH HOH . M 4 HOH A 27 627 98 HOH HOH . M 4 HOH A 28 628 101 HOH HOH . M 4 HOH A 29 629 102 HOH HOH . M 4 HOH A 30 630 106 HOH HOH . M 4 HOH A 31 631 108 HOH HOH . M 4 HOH A 32 632 109 HOH HOH . M 4 HOH A 33 633 111 HOH HOH . M 4 HOH A 34 634 112 HOH HOH . M 4 HOH A 35 635 113 HOH HOH . M 4 HOH A 36 636 114 HOH HOH . M 4 HOH A 37 637 116 HOH HOH . M 4 HOH A 38 638 117 HOH HOH . M 4 HOH A 39 639 121 HOH HOH . M 4 HOH A 40 640 124 HOH HOH . N 4 HOH B 1 601 2 HOH HOH . N 4 HOH B 2 602 3 HOH HOH . N 4 HOH B 3 603 10 HOH HOH . N 4 HOH B 4 604 13 HOH HOH . N 4 HOH B 5 605 17 HOH HOH . N 4 HOH B 6 606 20 HOH HOH . N 4 HOH B 7 607 23 HOH HOH . N 4 HOH B 8 608 35 HOH HOH . N 4 HOH B 9 609 41 HOH HOH . N 4 HOH B 10 610 47 HOH HOH . N 4 HOH B 11 611 62 HOH HOH . N 4 HOH B 12 612 65 HOH HOH . N 4 HOH B 13 613 66 HOH HOH . N 4 HOH B 14 614 74 HOH HOH . N 4 HOH B 15 615 77 HOH HOH . N 4 HOH B 16 616 79 HOH HOH . N 4 HOH B 17 617 81 HOH HOH . N 4 HOH B 18 618 84 HOH HOH . N 4 HOH B 19 619 86 HOH HOH . N 4 HOH B 20 620 89 HOH HOH . N 4 HOH B 21 621 90 HOH HOH . N 4 HOH B 22 622 91 HOH HOH . N 4 HOH B 23 623 94 HOH HOH . N 4 HOH B 24 624 107 HOH HOH . N 4 HOH B 25 625 115 HOH HOH . N 4 HOH B 26 626 128 HOH HOH . O 4 HOH C 1 601 6 HOH HOH . O 4 HOH C 2 602 12 HOH HOH . O 4 HOH C 3 603 14 HOH HOH . O 4 HOH C 4 604 16 HOH HOH . O 4 HOH C 5 605 19 HOH HOH . O 4 HOH C 6 606 22 HOH HOH . O 4 HOH C 7 607 27 HOH HOH . O 4 HOH C 8 608 28 HOH HOH . O 4 HOH C 9 609 31 HOH HOH . O 4 HOH C 10 610 44 HOH HOH . O 4 HOH C 11 611 46 HOH HOH . O 4 HOH C 12 612 48 HOH HOH . O 4 HOH C 13 613 49 HOH HOH . O 4 HOH C 14 614 50 HOH HOH . O 4 HOH C 15 615 53 HOH HOH . O 4 HOH C 16 616 54 HOH HOH . O 4 HOH C 17 617 63 HOH HOH . O 4 HOH C 18 618 64 HOH HOH . O 4 HOH C 19 619 76 HOH HOH . O 4 HOH C 20 620 78 HOH HOH . O 4 HOH C 21 621 80 HOH HOH . O 4 HOH C 22 622 82 HOH HOH . O 4 HOH C 23 623 103 HOH HOH . O 4 HOH C 24 624 105 HOH HOH . O 4 HOH C 25 625 122 HOH HOH . O 4 HOH C 26 626 123 HOH HOH . P 4 HOH D 1 601 1 HOH HOH . P 4 HOH D 2 602 5 HOH HOH . P 4 HOH D 3 603 7 HOH HOH . P 4 HOH D 4 604 9 HOH HOH . P 4 HOH D 5 605 11 HOH HOH . P 4 HOH D 6 606 18 HOH HOH . P 4 HOH D 7 607 21 HOH HOH . P 4 HOH D 8 608 32 HOH HOH . P 4 HOH D 9 609 33 HOH HOH . P 4 HOH D 10 610 34 HOH HOH . P 4 HOH D 11 611 58 HOH HOH . P 4 HOH D 12 612 60 HOH HOH . P 4 HOH D 13 613 67 HOH HOH . P 4 HOH D 14 614 68 HOH HOH . P 4 HOH D 15 615 72 HOH HOH . P 4 HOH D 16 616 83 HOH HOH . P 4 HOH D 17 617 96 HOH HOH . P 4 HOH D 18 618 97 HOH HOH . P 4 HOH D 19 619 99 HOH HOH . P 4 HOH D 20 620 104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . L 3 51.743 45.829 115.915 1 104 ? P PO4 502 D 1 HETATM 2 O O1 PO4 . . . L 3 51.97 46.207 117.36 1 105.56 ? O1 PO4 502 D 1 HETATM 3 O O2 PO4 . . . L 3 50.485 46.494 115.411 1 102.58 ? O2 PO4 502 D 1 HETATM 4 O O3 PO4 . . . L 3 52.919 46.286 115.084 1 101.84 ? O3 PO4 502 D 1 HETATM 5 O O4 PO4 . . . L 3 51.601 44.33 115.802 1 105.72 ? O4 PO4 502 D 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #