data_4RNV # _model_server_result.job_id 06ba7mnlzzDMlaZ7cNrCgw _model_server_result.datetime_utc '2024-11-05 01:23:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rnv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":502}' # _entry.id 4RNV # _exptl.entry_id 4RNV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description P-HYDROXYBENZALDEHYDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 89.45 _cell.angle_beta 81.43 _cell.angle_gamma 89.88 _cell.entry_id 4RNV _cell.length_a 45.591 _cell.length_b 88.076 _cell.length_c 105.617 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNV _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 H N N ? 3 J N N ? 3 L N N # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id HBA _chem_comp.mon_nstd_flag . _chem_comp.name P-HYDROXYBENZALDEHYDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' O1' HBA doub 170 n n C1' C1 HBA sing 171 n n C1' H1' HBA sing 172 n n C1 C2 HBA sing 173 n y C1 C6 HBA doub 174 n y C2 C3 HBA doub 175 n y C2 H2 HBA sing 176 n n C3 C4 HBA sing 177 n y C3 H3 HBA sing 178 n n C4 C5 HBA doub 179 n y C4 O4 HBA sing 180 n n C5 C6 HBA sing 181 n y C5 H5 HBA sing 182 n n C6 H6 HBA sing 183 n n O4 HO4 HBA sing 184 n n # _atom_sites.entry_id 4RNV _atom_sites.fract_transf_matrix[1][1] 0.021934 _atom_sites.fract_transf_matrix[1][2] -0.000046 _atom_sites.fract_transf_matrix[1][3] -0.003305 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011354 _atom_sites.fract_transf_matrix[2][3] -0.000107 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 FMN A 1 501 401 FMN FMN . F 3 HBA A 1 502 501 HBA HBA . G 2 FMN B 1 501 401 FMN FMN . H 3 HBA B 1 502 501 HBA HBA . I 2 FMN C 1 501 401 FMN FMN . J 3 HBA C 1 502 501 HBA HBA . K 2 FMN D 1 501 401 FMN FMN . L 3 HBA D 1 502 501 HBA HBA . M 4 HOH A 1 601 1 HOH HOH . M 4 HOH A 2 602 5 HOH HOH . M 4 HOH A 3 603 10 HOH HOH . M 4 HOH A 4 604 11 HOH HOH . M 4 HOH A 5 605 16 HOH HOH . M 4 HOH A 6 606 17 HOH HOH . M 4 HOH A 7 607 21 HOH HOH . M 4 HOH A 8 608 22 HOH HOH . M 4 HOH A 9 609 24 HOH HOH . M 4 HOH A 10 610 27 HOH HOH . M 4 HOH A 11 611 30 HOH HOH . M 4 HOH A 12 612 31 HOH HOH . M 4 HOH A 13 613 42 HOH HOH . M 4 HOH A 14 614 43 HOH HOH . M 4 HOH A 15 615 46 HOH HOH . M 4 HOH A 16 616 48 HOH HOH . M 4 HOH A 17 617 54 HOH HOH . M 4 HOH A 18 618 55 HOH HOH . M 4 HOH A 19 619 56 HOH HOH . M 4 HOH A 20 620 59 HOH HOH . M 4 HOH A 21 621 61 HOH HOH . M 4 HOH A 22 622 71 HOH HOH . M 4 HOH A 23 623 74 HOH HOH . M 4 HOH A 24 624 78 HOH HOH . M 4 HOH A 25 625 81 HOH HOH . M 4 HOH A 26 626 84 HOH HOH . M 4 HOH A 27 627 86 HOH HOH . M 4 HOH A 28 628 89 HOH HOH . M 4 HOH A 29 629 90 HOH HOH . M 4 HOH A 30 630 101 HOH HOH . M 4 HOH A 31 631 102 HOH HOH . M 4 HOH A 32 632 104 HOH HOH . M 4 HOH A 33 633 105 HOH HOH . M 4 HOH A 34 634 110 HOH HOH . M 4 HOH A 35 635 114 HOH HOH . M 4 HOH A 36 636 119 HOH HOH . M 4 HOH A 37 637 120 HOH HOH . M 4 HOH A 38 638 125 HOH HOH . M 4 HOH A 39 639 129 HOH HOH . M 4 HOH A 40 640 130 HOH HOH . M 4 HOH A 41 641 136 HOH HOH . M 4 HOH A 42 642 139 HOH HOH . M 4 HOH A 43 643 141 HOH HOH . M 4 HOH A 44 644 142 HOH HOH . M 4 HOH A 45 645 145 HOH HOH . M 4 HOH A 46 646 146 HOH HOH . M 4 HOH A 47 647 147 HOH HOH . M 4 HOH A 48 648 151 HOH HOH . M 4 HOH A 49 649 158 HOH HOH . M 4 HOH A 50 650 161 HOH HOH . M 4 HOH A 51 651 162 HOH HOH . M 4 HOH A 52 652 167 HOH HOH . M 4 HOH A 53 653 169 HOH HOH . M 4 HOH A 54 654 172 HOH HOH . M 4 HOH A 55 655 179 HOH HOH . M 4 HOH A 56 656 184 HOH HOH . M 4 HOH A 57 657 193 HOH HOH . M 4 HOH A 58 658 200 HOH HOH . M 4 HOH A 59 659 213 HOH HOH . M 4 HOH A 60 660 216 HOH HOH . M 4 HOH A 61 661 220 HOH HOH . M 4 HOH A 62 662 223 HOH HOH . M 4 HOH A 63 663 228 HOH HOH . M 4 HOH A 64 664 230 HOH HOH . M 4 HOH A 65 665 232 HOH HOH . M 4 HOH A 66 666 233 HOH HOH . M 4 HOH A 67 667 244 HOH HOH . M 4 HOH A 68 668 245 HOH HOH . M 4 HOH A 69 669 249 HOH HOH . M 4 HOH A 70 670 252 HOH HOH . M 4 HOH A 71 671 258 HOH HOH . M 4 HOH A 72 672 259 HOH HOH . M 4 HOH A 73 673 267 HOH HOH . M 4 HOH A 74 674 268 HOH HOH . M 4 HOH A 75 675 273 HOH HOH . M 4 HOH A 76 676 280 HOH HOH . M 4 HOH A 77 677 288 HOH HOH . M 4 HOH A 78 678 289 HOH HOH . M 4 HOH A 79 679 296 HOH HOH . M 4 HOH A 80 680 307 HOH HOH . M 4 HOH A 81 681 310 HOH HOH . M 4 HOH A 82 682 316 HOH HOH . M 4 HOH A 83 683 317 HOH HOH . M 4 HOH A 84 684 319 HOH HOH . M 4 HOH A 85 685 322 HOH HOH . N 4 HOH B 1 601 2 HOH HOH . N 4 HOH B 2 602 3 HOH HOH . N 4 HOH B 3 603 6 HOH HOH . N 4 HOH B 4 604 7 HOH HOH . N 4 HOH B 5 605 8 HOH HOH . N 4 HOH B 6 606 12 HOH HOH . N 4 HOH B 7 607 18 HOH HOH . N 4 HOH B 8 608 23 HOH HOH . N 4 HOH B 9 609 37 HOH HOH . N 4 HOH B 10 610 40 HOH HOH . N 4 HOH B 11 611 41 HOH HOH . N 4 HOH B 12 612 45 HOH HOH . N 4 HOH B 13 613 47 HOH HOH . N 4 HOH B 14 614 49 HOH HOH . N 4 HOH B 15 615 51 HOH HOH . N 4 HOH B 16 616 52 HOH HOH . N 4 HOH B 17 617 57 HOH HOH . N 4 HOH B 18 618 58 HOH HOH . N 4 HOH B 19 619 63 HOH HOH . N 4 HOH B 20 620 65 HOH HOH . N 4 HOH B 21 621 88 HOH HOH . N 4 HOH B 22 622 91 HOH HOH . N 4 HOH B 23 623 94 HOH HOH . N 4 HOH B 24 624 98 HOH HOH . N 4 HOH B 25 625 106 HOH HOH . N 4 HOH B 26 626 111 HOH HOH . N 4 HOH B 27 627 113 HOH HOH . N 4 HOH B 28 628 116 HOH HOH . N 4 HOH B 29 629 117 HOH HOH . N 4 HOH B 30 630 126 HOH HOH . N 4 HOH B 31 631 128 HOH HOH . N 4 HOH B 32 632 131 HOH HOH . N 4 HOH B 33 633 132 HOH HOH . N 4 HOH B 34 634 140 HOH HOH . N 4 HOH B 35 635 154 HOH HOH . N 4 HOH B 36 636 166 HOH HOH . N 4 HOH B 37 637 173 HOH HOH . N 4 HOH B 38 638 175 HOH HOH . N 4 HOH B 39 639 176 HOH HOH . N 4 HOH B 40 640 178 HOH HOH . N 4 HOH B 41 641 180 HOH HOH . N 4 HOH B 42 642 183 HOH HOH . N 4 HOH B 43 643 186 HOH HOH . N 4 HOH B 44 644 195 HOH HOH . N 4 HOH B 45 645 196 HOH HOH . N 4 HOH B 46 646 198 HOH HOH . N 4 HOH B 47 647 199 HOH HOH . N 4 HOH B 48 648 201 HOH HOH . N 4 HOH B 49 649 202 HOH HOH . N 4 HOH B 50 650 205 HOH HOH . N 4 HOH B 51 651 208 HOH HOH . N 4 HOH B 52 652 222 HOH HOH . N 4 HOH B 53 653 225 HOH HOH . N 4 HOH B 54 654 227 HOH HOH . N 4 HOH B 55 655 229 HOH HOH . N 4 HOH B 56 656 234 HOH HOH . N 4 HOH B 57 657 238 HOH HOH . N 4 HOH B 58 658 242 HOH HOH . N 4 HOH B 59 659 250 HOH HOH . N 4 HOH B 60 660 262 HOH HOH . N 4 HOH B 61 661 263 HOH HOH . N 4 HOH B 62 662 264 HOH HOH . N 4 HOH B 63 663 265 HOH HOH . N 4 HOH B 64 664 266 HOH HOH . N 4 HOH B 65 665 270 HOH HOH . N 4 HOH B 66 666 275 HOH HOH . N 4 HOH B 67 667 279 HOH HOH . N 4 HOH B 68 668 286 HOH HOH . N 4 HOH B 69 669 291 HOH HOH . N 4 HOH B 70 670 292 HOH HOH . N 4 HOH B 71 671 297 HOH HOH . N 4 HOH B 72 672 298 HOH HOH . N 4 HOH B 73 673 299 HOH HOH . N 4 HOH B 74 674 304 HOH HOH . N 4 HOH B 75 675 318 HOH HOH . N 4 HOH B 76 676 320 HOH HOH . O 4 HOH C 1 601 4 HOH HOH . O 4 HOH C 2 602 9 HOH HOH . O 4 HOH C 3 603 13 HOH HOH . O 4 HOH C 4 604 14 HOH HOH . O 4 HOH C 5 605 15 HOH HOH . O 4 HOH C 6 606 19 HOH HOH . O 4 HOH C 7 607 20 HOH HOH . O 4 HOH C 8 608 25 HOH HOH . O 4 HOH C 9 609 29 HOH HOH . O 4 HOH C 10 610 33 HOH HOH . O 4 HOH C 11 611 35 HOH HOH . O 4 HOH C 12 612 38 HOH HOH . O 4 HOH C 13 613 39 HOH HOH . O 4 HOH C 14 614 53 HOH HOH . O 4 HOH C 15 615 67 HOH HOH . O 4 HOH C 16 616 69 HOH HOH . O 4 HOH C 17 617 70 HOH HOH . O 4 HOH C 18 618 79 HOH HOH . O 4 HOH C 19 619 83 HOH HOH . O 4 HOH C 20 620 85 HOH HOH . O 4 HOH C 21 621 92 HOH HOH . O 4 HOH C 22 622 93 HOH HOH . O 4 HOH C 23 623 99 HOH HOH . O 4 HOH C 24 624 103 HOH HOH . O 4 HOH C 25 625 108 HOH HOH . O 4 HOH C 26 626 109 HOH HOH . O 4 HOH C 27 627 121 HOH HOH . O 4 HOH C 28 628 124 HOH HOH . O 4 HOH C 29 629 127 HOH HOH . O 4 HOH C 30 630 134 HOH HOH . O 4 HOH C 31 631 149 HOH HOH . O 4 HOH C 32 632 157 HOH HOH . O 4 HOH C 33 633 159 HOH HOH . O 4 HOH C 34 634 160 HOH HOH . O 4 HOH C 35 635 168 HOH HOH . O 4 HOH C 36 636 181 HOH HOH . O 4 HOH C 37 637 182 HOH HOH . O 4 HOH C 38 638 192 HOH HOH . O 4 HOH C 39 639 197 HOH HOH . O 4 HOH C 40 640 203 HOH HOH . O 4 HOH C 41 641 209 HOH HOH . O 4 HOH C 42 642 211 HOH HOH . O 4 HOH C 43 643 214 HOH HOH . O 4 HOH C 44 644 217 HOH HOH . O 4 HOH C 45 645 219 HOH HOH . O 4 HOH C 46 646 224 HOH HOH . O 4 HOH C 47 647 237 HOH HOH . O 4 HOH C 48 648 243 HOH HOH . O 4 HOH C 49 649 256 HOH HOH . O 4 HOH C 50 650 261 HOH HOH . O 4 HOH C 51 651 276 HOH HOH . O 4 HOH C 52 652 285 HOH HOH . O 4 HOH C 53 653 287 HOH HOH . O 4 HOH C 54 654 293 HOH HOH . O 4 HOH C 55 655 295 HOH HOH . O 4 HOH C 56 656 301 HOH HOH . O 4 HOH C 57 657 303 HOH HOH . O 4 HOH C 58 658 305 HOH HOH . O 4 HOH C 59 659 313 HOH HOH . O 4 HOH C 60 660 314 HOH HOH . P 4 HOH D 1 601 26 HOH HOH . P 4 HOH D 2 602 28 HOH HOH . P 4 HOH D 3 603 32 HOH HOH . P 4 HOH D 4 604 34 HOH HOH . P 4 HOH D 5 605 36 HOH HOH . P 4 HOH D 6 606 44 HOH HOH . P 4 HOH D 7 607 50 HOH HOH . P 4 HOH D 8 608 60 HOH HOH . P 4 HOH D 9 609 62 HOH HOH . P 4 HOH D 10 610 64 HOH HOH . P 4 HOH D 11 611 66 HOH HOH . P 4 HOH D 12 612 68 HOH HOH . P 4 HOH D 13 613 72 HOH HOH . P 4 HOH D 14 614 75 HOH HOH . P 4 HOH D 15 615 76 HOH HOH . P 4 HOH D 16 616 77 HOH HOH . P 4 HOH D 17 617 97 HOH HOH . P 4 HOH D 18 618 100 HOH HOH . P 4 HOH D 19 619 107 HOH HOH . P 4 HOH D 20 620 112 HOH HOH . P 4 HOH D 21 621 115 HOH HOH . P 4 HOH D 22 622 133 HOH HOH . P 4 HOH D 23 623 135 HOH HOH . P 4 HOH D 24 624 138 HOH HOH . P 4 HOH D 25 625 143 HOH HOH . P 4 HOH D 26 626 144 HOH HOH . P 4 HOH D 27 627 150 HOH HOH . P 4 HOH D 28 628 155 HOH HOH . P 4 HOH D 29 629 156 HOH HOH . P 4 HOH D 30 630 163 HOH HOH . P 4 HOH D 31 631 165 HOH HOH . P 4 HOH D 32 632 174 HOH HOH . P 4 HOH D 33 633 187 HOH HOH . P 4 HOH D 34 634 191 HOH HOH . P 4 HOH D 35 635 194 HOH HOH . P 4 HOH D 36 636 207 HOH HOH . P 4 HOH D 37 637 212 HOH HOH . P 4 HOH D 38 638 226 HOH HOH . P 4 HOH D 39 639 236 HOH HOH . P 4 HOH D 40 640 239 HOH HOH . P 4 HOH D 41 641 254 HOH HOH . P 4 HOH D 42 642 260 HOH HOH . P 4 HOH D 43 643 269 HOH HOH . P 4 HOH D 44 644 281 HOH HOH . P 4 HOH D 45 645 283 HOH HOH . P 4 HOH D 46 646 312 HOH HOH . P 4 HOH D 47 647 321 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' HBA . . . L 3 -52.712 -90.058 -116.274 1 60.35 ? C1' HBA 502 D 1 HETATM 2 O O1' HBA . . . L 3 -53.431 -90.203 -117.24 1 61.27 ? O1' HBA 502 D 1 HETATM 3 C C1 HBA . . . L 3 -52.233 -88.676 -115.87 1 59.09 ? C1 HBA 502 D 1 HETATM 4 C C2 HBA . . . L 3 -51.33 -88.556 -114.824 1 59.33 ? C2 HBA 502 D 1 HETATM 5 C C3 HBA . . . L 3 -50.884 -87.314 -114.418 1 58.71 ? C3 HBA 502 D 1 HETATM 6 C C4 HBA . . . L 3 -51.322 -86.19 -115.093 1 56.74 ? C4 HBA 502 D 1 HETATM 7 C C5 HBA . . . L 3 -52.224 -86.294 -116.136 1 56.26 ? C5 HBA 502 D 1 HETATM 8 C C6 HBA . . . L 3 -52.684 -87.537 -116.525 1 57.35 ? C6 HBA 502 D 1 HETATM 9 O O4 HBA . . . L 3 -50.869 -84.917 -114.713 1 55.71 ? O4 HBA 502 D 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #