data_4RNY # _model_server_result.job_id lm_S1n3GxvywT1sZXGW38Q _model_server_result.datetime_utc '2024-11-12 21:33:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rny # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":509}' # _entry.id 4RNY # _exptl.entry_id 4RNY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RNY _cell.length_a 62.618 _cell.length_b 112.146 _cell.length_c 112.939 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RNY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,S 1 1 B,L,M,N,O,P,Q,R,T 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 34 A GLU 74 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc2 A NE2 HIS 219 A HIS 259 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc3 A OD1 ASP 223 A ASP 263 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc4 A ND1 HIS 301 A HIS 341 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? metalc ? metalc5 B OE2 GLU 34 B GLU 74 1_555 L ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc6 B NE2 HIS 219 B HIS 259 1_555 L ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc7 B OD1 ASP 223 B ASP 263 1_555 L ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc8 B ND1 HIS 301 B HIS 341 1_555 L ZN ZN . B ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 4RNY _atom_sites.fract_transf_matrix[1][1] 0.01597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008917 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008854 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 501 1 ZN ZN . D 3 SO4 A 1 502 1 SO4 SO4 . E 3 SO4 A 1 503 5 SO4 SO4 . F 3 SO4 A 1 504 6 SO4 SO4 . G 3 SO4 A 1 505 7 SO4 SO4 . H 4 GOL A 1 506 1 GOL GOL . I 4 GOL A 1 507 2 GOL GOL . J 4 GOL A 1 508 3 GOL GOL . K 4 GOL A 1 509 5 GOL GOL . L 2 ZN B 1 501 2 ZN ZN . M 3 SO4 B 1 502 2 SO4 SO4 . N 3 SO4 B 1 503 3 SO4 SO4 . O 3 SO4 B 1 504 4 SO4 SO4 . P 3 SO4 B 1 505 8 SO4 SO4 . Q 3 SO4 B 1 506 9 SO4 SO4 . R 4 GOL B 1 507 4 GOL GOL . S 5 HOH A 1 601 5 HOH HOH . S 5 HOH A 2 602 6 HOH HOH . S 5 HOH A 3 603 8 HOH HOH . S 5 HOH A 4 604 12 HOH HOH . S 5 HOH A 5 605 15 HOH HOH . S 5 HOH A 6 606 16 HOH HOH . S 5 HOH A 7 607 18 HOH HOH . S 5 HOH A 8 608 19 HOH HOH . S 5 HOH A 9 609 20 HOH HOH . S 5 HOH A 10 610 23 HOH HOH . S 5 HOH A 11 611 27 HOH HOH . S 5 HOH A 12 612 29 HOH HOH . S 5 HOH A 13 613 30 HOH HOH . S 5 HOH A 14 614 32 HOH HOH . S 5 HOH A 15 615 33 HOH HOH . S 5 HOH A 16 616 35 HOH HOH . S 5 HOH A 17 617 36 HOH HOH . S 5 HOH A 18 618 39 HOH HOH . S 5 HOH A 19 619 45 HOH HOH . S 5 HOH A 20 620 48 HOH HOH . S 5 HOH A 21 621 52 HOH HOH . S 5 HOH A 22 622 55 HOH HOH . S 5 HOH A 23 623 56 HOH HOH . S 5 HOH A 24 624 58 HOH HOH . S 5 HOH A 25 625 61 HOH HOH . S 5 HOH A 26 626 65 HOH HOH . S 5 HOH A 27 627 67 HOH HOH . S 5 HOH A 28 628 68 HOH HOH . S 5 HOH A 29 629 79 HOH HOH . S 5 HOH A 30 630 80 HOH HOH . S 5 HOH A 31 631 81 HOH HOH . S 5 HOH A 32 632 82 HOH HOH . S 5 HOH A 33 633 84 HOH HOH . S 5 HOH A 34 634 89 HOH HOH . S 5 HOH A 35 635 90 HOH HOH . S 5 HOH A 36 636 92 HOH HOH . S 5 HOH A 37 637 93 HOH HOH . S 5 HOH A 38 638 95 HOH HOH . S 5 HOH A 39 639 105 HOH HOH . S 5 HOH A 40 640 107 HOH HOH . S 5 HOH A 41 641 108 HOH HOH . S 5 HOH A 42 642 118 HOH HOH . S 5 HOH A 43 643 122 HOH HOH . S 5 HOH A 44 644 124 HOH HOH . S 5 HOH A 45 645 126 HOH HOH . S 5 HOH A 46 646 128 HOH HOH . S 5 HOH A 47 647 132 HOH HOH . S 5 HOH A 48 648 133 HOH HOH . S 5 HOH A 49 649 140 HOH HOH . S 5 HOH A 50 650 142 HOH HOH . S 5 HOH A 51 651 148 HOH HOH . S 5 HOH A 52 652 152 HOH HOH . S 5 HOH A 53 653 153 HOH HOH . S 5 HOH A 54 654 154 HOH HOH . S 5 HOH A 55 655 157 HOH HOH . S 5 HOH A 56 656 159 HOH HOH . S 5 HOH A 57 657 162 HOH HOH . S 5 HOH A 58 658 163 HOH HOH . S 5 HOH A 59 659 164 HOH HOH . S 5 HOH A 60 660 166 HOH HOH . S 5 HOH A 61 661 167 HOH HOH . S 5 HOH A 62 662 175 HOH HOH . S 5 HOH A 63 663 176 HOH HOH . S 5 HOH A 64 664 178 HOH HOH . S 5 HOH A 65 665 182 HOH HOH . S 5 HOH A 66 666 188 HOH HOH . S 5 HOH A 67 667 189 HOH HOH . S 5 HOH A 68 668 192 HOH HOH . S 5 HOH A 69 669 197 HOH HOH . S 5 HOH A 70 670 198 HOH HOH . S 5 HOH A 71 671 207 HOH HOH . S 5 HOH A 72 672 208 HOH HOH . S 5 HOH A 73 673 209 HOH HOH . S 5 HOH A 74 674 211 HOH HOH . S 5 HOH A 75 675 212 HOH HOH . S 5 HOH A 76 676 213 HOH HOH . S 5 HOH A 77 677 214 HOH HOH . S 5 HOH A 78 678 217 HOH HOH . S 5 HOH A 79 679 221 HOH HOH . S 5 HOH A 80 680 223 HOH HOH . S 5 HOH A 81 681 225 HOH HOH . S 5 HOH A 82 682 228 HOH HOH . S 5 HOH A 83 683 232 HOH HOH . S 5 HOH A 84 684 233 HOH HOH . S 5 HOH A 85 685 246 HOH HOH . S 5 HOH A 86 686 247 HOH HOH . S 5 HOH A 87 687 248 HOH HOH . S 5 HOH A 88 688 252 HOH HOH . S 5 HOH A 89 689 255 HOH HOH . S 5 HOH A 90 690 256 HOH HOH . S 5 HOH A 91 691 257 HOH HOH . S 5 HOH A 92 692 258 HOH HOH . S 5 HOH A 93 693 259 HOH HOH . S 5 HOH A 94 694 260 HOH HOH . S 5 HOH A 95 695 263 HOH HOH . S 5 HOH A 96 696 266 HOH HOH . S 5 HOH A 97 697 275 HOH HOH . S 5 HOH A 98 698 276 HOH HOH . S 5 HOH A 99 699 277 HOH HOH . S 5 HOH A 100 700 291 HOH HOH . S 5 HOH A 101 701 294 HOH HOH . S 5 HOH A 102 702 296 HOH HOH . S 5 HOH A 103 703 299 HOH HOH . S 5 HOH A 104 704 302 HOH HOH . T 5 HOH B 1 601 2 HOH HOH . T 5 HOH B 2 602 3 HOH HOH . T 5 HOH B 3 603 7 HOH HOH . T 5 HOH B 4 604 9 HOH HOH . T 5 HOH B 5 605 11 HOH HOH . T 5 HOH B 6 606 13 HOH HOH . T 5 HOH B 7 607 14 HOH HOH . T 5 HOH B 8 608 17 HOH HOH . T 5 HOH B 9 609 21 HOH HOH . T 5 HOH B 10 610 22 HOH HOH . T 5 HOH B 11 611 24 HOH HOH . T 5 HOH B 12 612 25 HOH HOH . T 5 HOH B 13 613 26 HOH HOH . T 5 HOH B 14 614 28 HOH HOH . T 5 HOH B 15 615 31 HOH HOH . T 5 HOH B 16 616 34 HOH HOH . T 5 HOH B 17 617 37 HOH HOH . T 5 HOH B 18 618 38 HOH HOH . T 5 HOH B 19 619 40 HOH HOH . T 5 HOH B 20 620 41 HOH HOH . T 5 HOH B 21 621 42 HOH HOH . T 5 HOH B 22 622 44 HOH HOH . T 5 HOH B 23 623 46 HOH HOH . T 5 HOH B 24 624 47 HOH HOH . T 5 HOH B 25 625 49 HOH HOH . T 5 HOH B 26 626 50 HOH HOH . T 5 HOH B 27 627 51 HOH HOH . T 5 HOH B 28 628 53 HOH HOH . T 5 HOH B 29 629 54 HOH HOH . T 5 HOH B 30 630 57 HOH HOH . T 5 HOH B 31 631 59 HOH HOH . T 5 HOH B 32 632 60 HOH HOH . T 5 HOH B 33 633 63 HOH HOH . T 5 HOH B 34 634 64 HOH HOH . T 5 HOH B 35 635 66 HOH HOH . T 5 HOH B 36 636 70 HOH HOH . T 5 HOH B 37 637 71 HOH HOH . T 5 HOH B 38 638 73 HOH HOH . T 5 HOH B 39 639 74 HOH HOH . T 5 HOH B 40 640 75 HOH HOH . T 5 HOH B 41 641 76 HOH HOH . T 5 HOH B 42 642 78 HOH HOH . T 5 HOH B 43 643 94 HOH HOH . T 5 HOH B 44 644 97 HOH HOH . T 5 HOH B 45 645 98 HOH HOH . T 5 HOH B 46 646 99 HOH HOH . T 5 HOH B 47 647 100 HOH HOH . T 5 HOH B 48 648 101 HOH HOH . T 5 HOH B 49 649 102 HOH HOH . T 5 HOH B 50 650 103 HOH HOH . T 5 HOH B 51 651 106 HOH HOH . T 5 HOH B 52 652 109 HOH HOH . T 5 HOH B 53 653 110 HOH HOH . T 5 HOH B 54 654 113 HOH HOH . T 5 HOH B 55 655 114 HOH HOH . T 5 HOH B 56 656 116 HOH HOH . T 5 HOH B 57 657 119 HOH HOH . T 5 HOH B 58 658 120 HOH HOH . T 5 HOH B 59 659 123 HOH HOH . T 5 HOH B 60 660 129 HOH HOH . T 5 HOH B 61 661 131 HOH HOH . T 5 HOH B 62 662 134 HOH HOH . T 5 HOH B 63 663 135 HOH HOH . T 5 HOH B 64 664 137 HOH HOH . T 5 HOH B 65 665 138 HOH HOH . T 5 HOH B 66 666 143 HOH HOH . T 5 HOH B 67 667 144 HOH HOH . T 5 HOH B 68 668 145 HOH HOH . T 5 HOH B 69 669 146 HOH HOH . T 5 HOH B 70 670 147 HOH HOH . T 5 HOH B 71 671 149 HOH HOH . T 5 HOH B 72 672 150 HOH HOH . T 5 HOH B 73 673 151 HOH HOH . T 5 HOH B 74 674 155 HOH HOH . T 5 HOH B 75 675 160 HOH HOH . T 5 HOH B 76 676 161 HOH HOH . T 5 HOH B 77 677 165 HOH HOH . T 5 HOH B 78 678 168 HOH HOH . T 5 HOH B 79 679 170 HOH HOH . T 5 HOH B 80 680 171 HOH HOH . T 5 HOH B 81 681 174 HOH HOH . T 5 HOH B 82 682 177 HOH HOH . T 5 HOH B 83 683 179 HOH HOH . T 5 HOH B 84 684 183 HOH HOH . T 5 HOH B 85 685 184 HOH HOH . T 5 HOH B 86 686 186 HOH HOH . T 5 HOH B 87 687 190 HOH HOH . T 5 HOH B 88 688 191 HOH HOH . T 5 HOH B 89 689 194 HOH HOH . T 5 HOH B 90 690 195 HOH HOH . T 5 HOH B 91 691 199 HOH HOH . T 5 HOH B 92 692 202 HOH HOH . T 5 HOH B 93 693 206 HOH HOH . T 5 HOH B 94 694 210 HOH HOH . T 5 HOH B 95 695 219 HOH HOH . T 5 HOH B 96 696 222 HOH HOH . T 5 HOH B 97 697 224 HOH HOH . T 5 HOH B 98 698 231 HOH HOH . T 5 HOH B 99 699 237 HOH HOH . T 5 HOH B 100 700 241 HOH HOH . T 5 HOH B 101 701 245 HOH HOH . T 5 HOH B 102 702 249 HOH HOH . T 5 HOH B 103 703 250 HOH HOH . T 5 HOH B 104 704 251 HOH HOH . T 5 HOH B 105 705 261 HOH HOH . T 5 HOH B 106 706 265 HOH HOH . T 5 HOH B 107 707 268 HOH HOH . T 5 HOH B 108 708 269 HOH HOH . T 5 HOH B 109 709 271 HOH HOH . T 5 HOH B 110 710 278 HOH HOH . T 5 HOH B 111 711 280 HOH HOH . T 5 HOH B 112 712 285 HOH HOH . T 5 HOH B 113 713 286 HOH HOH . T 5 HOH B 114 714 288 HOH HOH . T 5 HOH B 115 715 290 HOH HOH . T 5 HOH B 116 716 293 HOH HOH . T 5 HOH B 117 717 300 HOH HOH . T 5 HOH B 118 718 301 HOH HOH . T 5 HOH B 119 719 303 HOH HOH . T 5 HOH B 120 720 305 HOH HOH . T 5 HOH B 121 721 306 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 4 -26.917 -11.845 -2.595 1 50.81 ? C1 GOL 509 A 1 HETATM 2 O O1 GOL . . . K 4 -27.765 -12.793 -3.261 1 49.3 ? O1 GOL 509 A 1 HETATM 3 C C2 GOL . . . K 4 -26.339 -12.363 -1.265 1 52.5 ? C2 GOL 509 A 1 HETATM 4 O O2 GOL . . . K 4 -27.008 -11.86 -0.092 1 49.4 ? O2 GOL 509 A 1 HETATM 5 C C3 GOL . . . K 4 -24.928 -11.845 -1.129 1 55.82 ? C3 GOL 509 A 1 HETATM 6 O O3 GOL . . . K 4 -24.921 -10.452 -1.512 1 61.13 ? O3 GOL 509 A 1 # _model_server_stats.io_time_ms 107 _model_server_stats.parse_time_ms 133 _model_server_stats.create_model_time_ms 145 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #