data_4ROS # _model_server_result.job_id c-hCyn-UqvQ55Dzd178rsg _model_server_result.datetime_utc '2025-07-30 20:44:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ros # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4ROS # _exptl.entry_id 4ROS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 559.316 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ADENOSINE-5-DIPHOSPHORIBOSE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4ROS _cell.length_a 108.396 _cell.length_b 108.396 _cell.length_c 104.014 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4ROS _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 54.198 -93.87369 0 3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -34.671333 4 'crystal symmetry operation' 12_544 x,x-y-1,-z-1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 54.198 -93.87369 -34.671333 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 166 A GLU 166 1_555 C CA CA . A CA 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc2 A OE1 GLU 287 A GLU 287 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc3 A OE2 GLU 287 A GLU 287 1_555 B CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc4 B CA CA . A CA 401 1_555 F O HOH . A HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc5 B CA CA . A CA 401 1_555 F O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc6 B CA CA . A CA 401 1_555 F O HOH . A HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc7 B CA CA . A CA 401 1_555 F O HOH . A HOH 622 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc8 B CA CA . A CA 401 1_555 F O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc9 C CA CA . A CA 402 1_555 F O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.594 ? metalc ? metalc10 C CA CA . A CA 402 1_555 F O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? # _chem_comp.formula 'C15 H23 N5 O14 P2' _chem_comp.formula_weight 559.316 _chem_comp.id APR _chem_comp.mon_nstd_flag . _chem_comp.name ADENOSINE-5-DIPHOSPHORIBOSE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 APR sing 13 n y N1 C6 APR doub 14 n y C2 N3 APR doub 15 n y C2 H2 APR sing 16 n n N3 C4 APR sing 17 n y C4 C5 APR doub 18 n y C4 N9 APR sing 19 n y C5 C6 APR sing 20 n y C5 N7 APR sing 21 n y C6 N6 APR sing 22 n n N6 H61 APR sing 23 n n N6 H62 APR sing 24 n n N7 C8 APR doub 25 n y C8 N9 APR sing 26 n y C8 H8 APR sing 27 n n N9 C1' APR sing 28 n n C1' C2' APR sing 29 n n C1' O4' APR sing 30 n n C1' "H'1" APR sing 31 n n C2' O2' APR sing 32 n n C2' C3' APR sing 33 n n C2' "H'2" APR sing 34 n n O2' "HO'2" APR sing 35 n n C3' O3' APR sing 36 n n C3' C4' APR sing 37 n n C3' "H'3" APR sing 38 n n O3' "HO'3" APR sing 39 n n O4' C4' APR sing 40 n n C4' C5' APR sing 41 n n C4' "H'4" APR sing 42 n n C5' O5' APR sing 43 n n C5' "H5'1" APR sing 44 n n C5' "H5'2" APR sing 45 n n O5' PA APR sing 46 n n PA O1A APR doub 47 n n PA O2A APR sing 48 n n PA O3A APR sing 49 n n O2A HOA2 APR sing 50 n n O3A PB APR sing 51 n n PB O1B APR doub 52 n n PB O2B APR sing 53 n n PB O5D APR sing 54 n n O2B HOB2 APR sing 55 n n O5D C5D APR sing 56 n n C5D C4D APR sing 57 n n C5D H5R1 APR sing 58 n n C5D H5R2 APR sing 59 n n O4D C1D APR sing 60 n n O4D C4D APR sing 61 n n O1D C1D APR sing 62 n n O1D HOR1 APR sing 63 n n C1D C2D APR sing 64 n n C1D "HR'1" APR sing 65 n n O2D C2D APR sing 66 n n O2D HOR2 APR sing 67 n n C2D C3D APR sing 68 n n C2D "HR'2" APR sing 69 n n O3D C3D APR sing 70 n n O3D HOR3 APR sing 71 n n C3D C4D APR sing 72 n n C3D "HR'3" APR sing 73 n n C4D "HR'4" APR sing 74 n n # _atom_sites.entry_id 4ROS _atom_sites.fract_transf_matrix[1][1] 0.009225 _atom_sites.fract_transf_matrix[1][2] 0.005326 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010653 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 401 1 CA CA . C 2 CA A 1 402 1 CA CA . D 3 OAA A 1 403 1 OAA OAA . E 4 APR A 1 404 1 APR APR . F 5 HOH A 1 501 4 HOH HOH . F 5 HOH A 2 502 5 HOH HOH . F 5 HOH A 3 503 6 HOH HOH . F 5 HOH A 4 504 7 HOH HOH . F 5 HOH A 5 505 8 HOH HOH . F 5 HOH A 6 506 9 HOH HOH . F 5 HOH A 7 507 10 HOH HOH . F 5 HOH A 8 508 11 HOH HOH . F 5 HOH A 9 509 12 HOH HOH . F 5 HOH A 10 510 13 HOH HOH . F 5 HOH A 11 511 14 HOH HOH . F 5 HOH A 12 512 15 HOH HOH . F 5 HOH A 13 513 16 HOH HOH . F 5 HOH A 14 514 17 HOH HOH . F 5 HOH A 15 515 18 HOH HOH . F 5 HOH A 16 516 19 HOH HOH . F 5 HOH A 17 517 20 HOH HOH . F 5 HOH A 18 518 21 HOH HOH . F 5 HOH A 19 519 22 HOH HOH . F 5 HOH A 20 520 23 HOH HOH . F 5 HOH A 21 521 24 HOH HOH . F 5 HOH A 22 522 25 HOH HOH . F 5 HOH A 23 523 26 HOH HOH . F 5 HOH A 24 524 27 HOH HOH . F 5 HOH A 25 525 28 HOH HOH . F 5 HOH A 26 526 29 HOH HOH . F 5 HOH A 27 527 30 HOH HOH . F 5 HOH A 28 528 32 HOH HOH . F 5 HOH A 29 529 33 HOH HOH . F 5 HOH A 30 530 34 HOH HOH . F 5 HOH A 31 531 35 HOH HOH . F 5 HOH A 32 532 36 HOH HOH . F 5 HOH A 33 533 37 HOH HOH . F 5 HOH A 34 534 38 HOH HOH . F 5 HOH A 35 535 39 HOH HOH . F 5 HOH A 36 536 40 HOH HOH . F 5 HOH A 37 537 41 HOH HOH . F 5 HOH A 38 538 42 HOH HOH . F 5 HOH A 39 539 43 HOH HOH . F 5 HOH A 40 540 44 HOH HOH . F 5 HOH A 41 541 45 HOH HOH . F 5 HOH A 42 542 46 HOH HOH . F 5 HOH A 43 543 47 HOH HOH . F 5 HOH A 44 544 48 HOH HOH . F 5 HOH A 45 545 49 HOH HOH . F 5 HOH A 46 546 50 HOH HOH . F 5 HOH A 47 547 51 HOH HOH . F 5 HOH A 48 548 53 HOH HOH . F 5 HOH A 49 549 54 HOH HOH . F 5 HOH A 50 550 55 HOH HOH . F 5 HOH A 51 551 56 HOH HOH . F 5 HOH A 52 552 57 HOH HOH . F 5 HOH A 53 553 58 HOH HOH . F 5 HOH A 54 554 59 HOH HOH . F 5 HOH A 55 555 60 HOH HOH . F 5 HOH A 56 556 61 HOH HOH . F 5 HOH A 57 557 64 HOH HOH . F 5 HOH A 58 558 67 HOH HOH . F 5 HOH A 59 559 68 HOH HOH . F 5 HOH A 60 560 69 HOH HOH . F 5 HOH A 61 561 70 HOH HOH . F 5 HOH A 62 562 71 HOH HOH . F 5 HOH A 63 563 72 HOH HOH . F 5 HOH A 64 564 73 HOH HOH . F 5 HOH A 65 565 74 HOH HOH . F 5 HOH A 66 566 75 HOH HOH . F 5 HOH A 67 567 77 HOH HOH . F 5 HOH A 68 568 78 HOH HOH . F 5 HOH A 69 569 79 HOH HOH . F 5 HOH A 70 570 80 HOH HOH . F 5 HOH A 71 571 81 HOH HOH . F 5 HOH A 72 572 83 HOH HOH . F 5 HOH A 73 573 85 HOH HOH . F 5 HOH A 74 574 86 HOH HOH . F 5 HOH A 75 575 87 HOH HOH . F 5 HOH A 76 576 88 HOH HOH . F 5 HOH A 77 577 89 HOH HOH . F 5 HOH A 78 578 90 HOH HOH . F 5 HOH A 79 579 91 HOH HOH . F 5 HOH A 80 580 92 HOH HOH . F 5 HOH A 81 581 93 HOH HOH . F 5 HOH A 82 582 94 HOH HOH . F 5 HOH A 83 583 96 HOH HOH . F 5 HOH A 84 584 97 HOH HOH . F 5 HOH A 85 585 100 HOH HOH . F 5 HOH A 86 586 101 HOH HOH . F 5 HOH A 87 587 102 HOH HOH . F 5 HOH A 88 588 103 HOH HOH . F 5 HOH A 89 589 105 HOH HOH . F 5 HOH A 90 590 106 HOH HOH . F 5 HOH A 91 591 107 HOH HOH . F 5 HOH A 92 592 110 HOH HOH . F 5 HOH A 93 593 111 HOH HOH . F 5 HOH A 94 594 112 HOH HOH . F 5 HOH A 95 595 113 HOH HOH . F 5 HOH A 96 596 114 HOH HOH . F 5 HOH A 97 597 115 HOH HOH . F 5 HOH A 98 598 116 HOH HOH . F 5 HOH A 99 599 117 HOH HOH . F 5 HOH A 100 600 118 HOH HOH . F 5 HOH A 101 601 119 HOH HOH . F 5 HOH A 102 602 120 HOH HOH . F 5 HOH A 103 603 121 HOH HOH . F 5 HOH A 104 604 123 HOH HOH . F 5 HOH A 105 605 124 HOH HOH . F 5 HOH A 106 606 125 HOH HOH . F 5 HOH A 107 607 126 HOH HOH . F 5 HOH A 108 608 127 HOH HOH . F 5 HOH A 109 609 128 HOH HOH . F 5 HOH A 110 610 129 HOH HOH . F 5 HOH A 111 611 130 HOH HOH . F 5 HOH A 112 612 131 HOH HOH . F 5 HOH A 113 613 132 HOH HOH . F 5 HOH A 114 614 133 HOH HOH . F 5 HOH A 115 615 134 HOH HOH . F 5 HOH A 116 616 135 HOH HOH . F 5 HOH A 117 617 136 HOH HOH . F 5 HOH A 118 618 137 HOH HOH . F 5 HOH A 119 619 138 HOH HOH . F 5 HOH A 120 620 139 HOH HOH . F 5 HOH A 121 621 140 HOH HOH . F 5 HOH A 122 622 141 HOH HOH . F 5 HOH A 123 623 142 HOH HOH . F 5 HOH A 124 624 143 HOH HOH . F 5 HOH A 125 625 144 HOH HOH . F 5 HOH A 126 626 145 HOH HOH . F 5 HOH A 127 627 146 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 APR . . . E 4 15.784 -20.788 -0.009 1 39.78 ? N1 APR 404 A 1 HETATM 2 C C2 APR . . . E 4 15.662 -21.856 -0.832 1 35.77 ? C2 APR 404 A 1 HETATM 3 N N3 APR . . . E 4 15.604 -21.693 -2.147 1 37.72 ? N3 APR 404 A 1 HETATM 4 C C4 APR . . . E 4 15.638 -20.465 -2.699 1 39.32 ? C4 APR 404 A 1 HETATM 5 C C5 APR . . . E 4 15.777 -19.253 -1.864 1 41.88 ? C5 APR 404 A 1 HETATM 6 C C6 APR . . . E 4 15.82 -19.53 -0.441 1 41.53 ? C6 APR 404 A 1 HETATM 7 N N6 APR . . . E 4 15.949 -18.53 0.408 1 45.96 ? N6 APR 404 A 1 HETATM 8 N N7 APR . . . E 4 15.818 -18.153 -2.68 1 43.4 ? N7 APR 404 A 1 HETATM 9 C C8 APR . . . E 4 15.689 -18.611 -3.947 1 39.77 ? C8 APR 404 A 1 HETATM 10 N N9 APR . . . E 4 15.553 -19.991 -3.939 1 39.83 ? N9 APR 404 A 1 HETATM 11 C C1' APR . . . E 4 15.5 -20.843 -5.078 1 34.61 ? C1' APR 404 A 1 HETATM 12 C C2' APR . . . E 4 14.685 -20.258 -6.186 1 35.97 ? C2' APR 404 A 1 HETATM 13 O O2' APR . . . E 4 13.276 -20.418 -5.949 1 36.82 ? O2' APR 404 A 1 HETATM 14 C C3' APR . . . E 4 15.22 -21.07 -7.363 1 36.69 ? C3' APR 404 A 1 HETATM 15 O O3' APR . . . E 4 14.317 -22.162 -7.65 1 34.1 ? O3' APR 404 A 1 HETATM 16 O O4' APR . . . E 4 16.877 -21.044 -5.563 1 34.89 ? O4' APR 404 A 1 HETATM 17 C C4' APR . . . E 4 16.637 -21.496 -6.905 1 32.24 ? C4' APR 404 A 1 HETATM 18 C C5' APR . . . E 4 17.696 -20.94 -7.829 1 35.95 ? C5' APR 404 A 1 HETATM 19 O O5' APR . . . E 4 17.425 -21.521 -9.104 1 37.11 ? O5' APR 404 A 1 HETATM 20 P PA APR . . . E 4 17.618 -20.74 -10.453 1 36.32 ? PA APR 404 A 1 HETATM 21 O O1A APR . . . E 4 17.058 -19.326 -10.256 1 33.78 ? O1A APR 404 A 1 HETATM 22 O O2A APR . . . E 4 17.044 -21.519 -11.58 1 31.91 ? O2A APR 404 A 1 HETATM 23 O O3A APR . . . E 4 19.21 -20.455 -10.625 1 34.77 ? O3A APR 404 A 1 HETATM 24 P PB APR . . . E 4 20.313 -21.552 -11.179 1 34 ? PB APR 404 A 1 HETATM 25 O O1B APR . . . E 4 19.715 -22.82 -10.656 1 31.55 ? O1B APR 404 A 1 HETATM 26 O O2B APR . . . E 4 20.62 -21.326 -12.629 1 31.98 ? O2B APR 404 A 1 HETATM 27 O O5D APR . . . E 4 21.521 -20.872 -10.321 1 30.26 ? O5D APR 404 A 1 HETATM 28 C C5D APR . . . E 4 21.594 -21.045 -8.915 1 29.37 ? C5D APR 404 A 1 HETATM 29 O O4D APR . . . E 4 23.931 -21.104 -8.82 1 32.52 ? O4D APR 404 A 1 HETATM 30 O O1D APR . . . E 4 25.332 -20.867 -10.681 1 34.1 ? O1D APR 404 A 1 HETATM 31 C C1D APR . . . E 4 24.798 -20.211 -9.511 1 33.13 ? C1D APR 404 A 1 HETATM 32 O O2D APR . . . E 4 24.781 -17.783 -10.079 1 37.79 ? O2D APR 404 A 1 HETATM 33 C C2D APR . . . E 4 23.978 -18.992 -9.89 1 31.15 ? C2D APR 404 A 1 HETATM 34 O O3D APR . . . E 4 23.551 -18.179 -7.7 1 31.67 ? O3D APR 404 A 1 HETATM 35 C C3D APR . . . E 4 22.968 -18.94 -8.748 1 32.66 ? C3D APR 404 A 1 HETATM 36 C C4D APR . . . E 4 22.804 -20.402 -8.3 1 33.09 ? C4D APR 404 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 36 #