data_4RP8 # _model_server_result.job_id vLSaN-fw9afXHC7xV5qelA _model_server_result.datetime_utc '2024-11-13 02:51:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rp8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 4RP8 # _exptl.entry_id 4RP8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 176.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ASCORBIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.73 _cell.angle_gamma 90 _cell.entry_id 4RP8 _cell.length_a 83.781 _cell.length_b 85.561 _cell.length_c 88.954 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RP8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C6 H8 O6' _chem_comp.formula_weight 176.124 _chem_comp.id ASC _chem_comp.mon_nstd_flag . _chem_comp.name 'ASCORBIC ACID' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms 'Vitamin C' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ASC sing 39 n n C1 O1 ASC doub 40 n n C1 O4 ASC sing 41 n n C2 C3 ASC doub 42 n n C2 O2 ASC sing 43 n n C3 C4 ASC sing 44 n n C3 O3 ASC sing 45 n n C4 C5 ASC sing 46 n n C4 O4 ASC sing 47 n n C4 H4 ASC sing 48 n n C5 C6 ASC sing 49 n n C5 O5 ASC sing 50 n n C5 H5 ASC sing 51 n n C6 O6 ASC sing 52 n n C6 H61 ASC sing 53 n n C6 H62 ASC sing 54 n n O2 HO2 ASC sing 55 n n O3 HO3 ASC sing 56 n n O5 HO5 ASC sing 57 n n O6 HO6 ASC sing 58 n n # _atom_sites.entry_id 4RP8 _atom_sites.fract_transf_matrix[1][1] 0.011936 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001408 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ASC A 1 501 501 ASC ASC . D 2 ASC C 1 501 501 ASC ASC . E 3 BNG C 1 502 502 BNG BNG . F 4 HOH A 1 601 601 HOH HOH . F 4 HOH A 2 602 602 HOH HOH . F 4 HOH A 3 603 603 HOH HOH . F 4 HOH A 4 604 604 HOH HOH . F 4 HOH A 5 605 605 HOH HOH . F 4 HOH A 6 606 606 HOH HOH . F 4 HOH A 7 607 607 HOH HOH . F 4 HOH A 8 608 608 HOH HOH . F 4 HOH A 9 609 609 HOH HOH . F 4 HOH A 10 610 610 HOH HOH . F 4 HOH A 11 611 611 HOH HOH . F 4 HOH A 12 612 612 HOH HOH . F 4 HOH A 13 613 613 HOH HOH . F 4 HOH A 14 614 614 HOH HOH . F 4 HOH A 15 615 615 HOH HOH . F 4 HOH A 16 616 616 HOH HOH . F 4 HOH A 17 617 617 HOH HOH . F 4 HOH A 18 618 618 HOH HOH . F 4 HOH A 19 619 619 HOH HOH . F 4 HOH A 20 620 620 HOH HOH . F 4 HOH A 21 621 621 HOH HOH . F 4 HOH A 22 622 622 HOH HOH . F 4 HOH A 23 623 623 HOH HOH . F 4 HOH A 24 624 624 HOH HOH . F 4 HOH A 25 625 625 HOH HOH . F 4 HOH A 26 626 626 HOH HOH . F 4 HOH A 27 627 627 HOH HOH . F 4 HOH A 28 628 628 HOH HOH . F 4 HOH A 29 629 629 HOH HOH . F 4 HOH A 30 630 630 HOH HOH . F 4 HOH A 31 631 631 HOH HOH . F 4 HOH A 32 632 632 HOH HOH . F 4 HOH A 33 633 633 HOH HOH . F 4 HOH A 34 634 634 HOH HOH . F 4 HOH A 35 635 635 HOH HOH . F 4 HOH A 36 636 636 HOH HOH . F 4 HOH A 37 637 637 HOH HOH . F 4 HOH A 38 638 638 HOH HOH . F 4 HOH A 39 639 639 HOH HOH . F 4 HOH A 40 640 640 HOH HOH . F 4 HOH A 41 641 641 HOH HOH . F 4 HOH A 42 642 642 HOH HOH . F 4 HOH A 43 643 643 HOH HOH . F 4 HOH A 44 644 644 HOH HOH . F 4 HOH A 45 645 645 HOH HOH . F 4 HOH A 46 646 646 HOH HOH . F 4 HOH A 47 647 647 HOH HOH . F 4 HOH A 48 648 648 HOH HOH . F 4 HOH A 49 649 649 HOH HOH . F 4 HOH A 50 650 650 HOH HOH . F 4 HOH A 51 651 651 HOH HOH . F 4 HOH A 52 652 652 HOH HOH . F 4 HOH A 53 653 653 HOH HOH . F 4 HOH A 54 654 654 HOH HOH . F 4 HOH A 55 655 655 HOH HOH . F 4 HOH A 56 656 656 HOH HOH . F 4 HOH A 57 657 657 HOH HOH . F 4 HOH A 58 658 658 HOH HOH . F 4 HOH A 59 659 659 HOH HOH . F 4 HOH A 60 660 660 HOH HOH . F 4 HOH A 61 661 661 HOH HOH . F 4 HOH A 62 662 662 HOH HOH . F 4 HOH A 63 663 663 HOH HOH . F 4 HOH A 64 664 664 HOH HOH . F 4 HOH A 65 665 665 HOH HOH . F 4 HOH A 66 666 666 HOH HOH . F 4 HOH A 67 667 667 HOH HOH . F 4 HOH A 68 668 668 HOH HOH . F 4 HOH A 69 669 669 HOH HOH . F 4 HOH A 70 670 670 HOH HOH . F 4 HOH A 71 671 671 HOH HOH . F 4 HOH A 72 672 672 HOH HOH . F 4 HOH A 73 673 673 HOH HOH . F 4 HOH A 74 674 674 HOH HOH . F 4 HOH A 75 675 675 HOH HOH . F 4 HOH A 76 676 676 HOH HOH . F 4 HOH A 77 677 677 HOH HOH . F 4 HOH A 78 678 678 HOH HOH . F 4 HOH A 79 679 679 HOH HOH . F 4 HOH A 80 680 680 HOH HOH . F 4 HOH A 81 681 681 HOH HOH . F 4 HOH A 82 682 682 HOH HOH . F 4 HOH A 83 683 683 HOH HOH . F 4 HOH A 84 684 684 HOH HOH . F 4 HOH A 85 685 685 HOH HOH . F 4 HOH A 86 686 686 HOH HOH . F 4 HOH A 87 687 687 HOH HOH . F 4 HOH A 88 688 688 HOH HOH . F 4 HOH A 89 689 689 HOH HOH . F 4 HOH A 90 690 690 HOH HOH . F 4 HOH A 91 691 691 HOH HOH . F 4 HOH A 92 692 692 HOH HOH . F 4 HOH A 93 693 693 HOH HOH . F 4 HOH A 94 694 694 HOH HOH . F 4 HOH A 95 695 695 HOH HOH . F 4 HOH A 96 696 696 HOH HOH . F 4 HOH A 97 697 697 HOH HOH . F 4 HOH A 98 698 698 HOH HOH . F 4 HOH A 99 699 699 HOH HOH . F 4 HOH A 100 700 700 HOH HOH . F 4 HOH A 101 701 701 HOH HOH . F 4 HOH A 102 702 702 HOH HOH . F 4 HOH A 103 703 703 HOH HOH . F 4 HOH A 104 704 704 HOH HOH . F 4 HOH A 105 705 705 HOH HOH . F 4 HOH A 106 706 706 HOH HOH . F 4 HOH A 107 707 707 HOH HOH . F 4 HOH A 108 708 708 HOH HOH . F 4 HOH A 109 709 709 HOH HOH . G 4 HOH C 1 601 601 HOH HOH . G 4 HOH C 2 602 602 HOH HOH . G 4 HOH C 3 603 603 HOH HOH . G 4 HOH C 4 604 604 HOH HOH . G 4 HOH C 5 605 605 HOH HOH . G 4 HOH C 6 606 606 HOH HOH . G 4 HOH C 7 607 607 HOH HOH . G 4 HOH C 8 608 608 HOH HOH . G 4 HOH C 9 609 609 HOH HOH . G 4 HOH C 10 610 610 HOH HOH . G 4 HOH C 11 611 611 HOH HOH . G 4 HOH C 12 612 612 HOH HOH . G 4 HOH C 13 613 613 HOH HOH . G 4 HOH C 14 614 614 HOH HOH . G 4 HOH C 15 615 615 HOH HOH . G 4 HOH C 16 616 616 HOH HOH . G 4 HOH C 17 617 617 HOH HOH . G 4 HOH C 18 618 618 HOH HOH . G 4 HOH C 19 619 619 HOH HOH . G 4 HOH C 20 620 620 HOH HOH . G 4 HOH C 21 621 621 HOH HOH . G 4 HOH C 22 622 622 HOH HOH . G 4 HOH C 23 623 623 HOH HOH . G 4 HOH C 24 624 624 HOH HOH . G 4 HOH C 25 625 625 HOH HOH . G 4 HOH C 26 626 626 HOH HOH . G 4 HOH C 27 627 627 HOH HOH . G 4 HOH C 28 628 628 HOH HOH . G 4 HOH C 29 629 629 HOH HOH . G 4 HOH C 30 630 630 HOH HOH . G 4 HOH C 31 631 631 HOH HOH . G 4 HOH C 32 632 632 HOH HOH . G 4 HOH C 33 633 633 HOH HOH . G 4 HOH C 34 634 634 HOH HOH . G 4 HOH C 35 635 635 HOH HOH . G 4 HOH C 36 636 636 HOH HOH . G 4 HOH C 37 637 637 HOH HOH . G 4 HOH C 38 638 638 HOH HOH . G 4 HOH C 39 639 639 HOH HOH . G 4 HOH C 40 640 640 HOH HOH . G 4 HOH C 41 641 641 HOH HOH . G 4 HOH C 42 642 642 HOH HOH . G 4 HOH C 43 643 643 HOH HOH . G 4 HOH C 44 644 644 HOH HOH . G 4 HOH C 45 645 645 HOH HOH . G 4 HOH C 46 646 646 HOH HOH . G 4 HOH C 47 647 647 HOH HOH . G 4 HOH C 48 648 648 HOH HOH . G 4 HOH C 49 649 649 HOH HOH . G 4 HOH C 50 650 650 HOH HOH . G 4 HOH C 51 651 651 HOH HOH . G 4 HOH C 52 652 652 HOH HOH . G 4 HOH C 53 653 653 HOH HOH . G 4 HOH C 54 654 654 HOH HOH . G 4 HOH C 55 655 655 HOH HOH . G 4 HOH C 56 656 656 HOH HOH . G 4 HOH C 57 657 657 HOH HOH . G 4 HOH C 58 658 658 HOH HOH . G 4 HOH C 59 659 659 HOH HOH . G 4 HOH C 60 660 660 HOH HOH . G 4 HOH C 61 661 661 HOH HOH . G 4 HOH C 62 662 662 HOH HOH . G 4 HOH C 63 663 663 HOH HOH . G 4 HOH C 64 664 664 HOH HOH . G 4 HOH C 65 665 665 HOH HOH . G 4 HOH C 66 666 666 HOH HOH . G 4 HOH C 67 667 667 HOH HOH . G 4 HOH C 68 668 668 HOH HOH . G 4 HOH C 69 669 669 HOH HOH . G 4 HOH C 70 670 670 HOH HOH . G 4 HOH C 71 671 671 HOH HOH . G 4 HOH C 72 672 672 HOH HOH . G 4 HOH C 73 673 673 HOH HOH . G 4 HOH C 74 674 674 HOH HOH . G 4 HOH C 75 675 675 HOH HOH . G 4 HOH C 76 676 676 HOH HOH . G 4 HOH C 77 677 677 HOH HOH . G 4 HOH C 78 678 678 HOH HOH . G 4 HOH C 79 679 679 HOH HOH . G 4 HOH C 80 680 680 HOH HOH . G 4 HOH C 81 681 681 HOH HOH . G 4 HOH C 82 682 682 HOH HOH . G 4 HOH C 83 683 683 HOH HOH . G 4 HOH C 84 684 684 HOH HOH . G 4 HOH C 85 685 685 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ASC . . . D 2 -14.651 3.838 -38.987 1 29.29 ? C1 ASC 501 C 1 HETATM 2 C C2 ASC . . . D 2 -14.139 3.029 -37.905 1 28.72 ? C2 ASC 501 C 1 HETATM 3 C C3 ASC . . . D 2 -14.454 3.645 -36.773 1 29.4 ? C3 ASC 501 C 1 HETATM 4 C C4 ASC . . . D 2 -15.205 4.927 -37.033 1 32.52 ? C4 ASC 501 C 1 HETATM 5 C C5 ASC . . . D 2 -14.48 6.161 -36.499 1 38.36 ? C5 ASC 501 C 1 HETATM 6 C C6 ASC . . . D 2 -15.317 7.396 -36.808 1 36.05 ? C6 ASC 501 C 1 HETATM 7 O O1 ASC . . . D 2 -14.538 3.594 -40.172 1 33.04 ? O1 ASC 501 C 1 HETATM 8 O O2 ASC . . . D 2 -13.476 1.88 -38.039 1 22.12 ? O2 ASC 501 C 1 HETATM 9 O O3 ASC . . . D 2 -14.162 3.19 -35.555 1 30.03 ? O3 ASC 501 C 1 HETATM 10 O O4 ASC . . . D 2 -15.327 5.012 -38.463 1 31.95 ? O4 ASC 501 C 1 HETATM 11 O O5 ASC . . . D 2 -13.19 6.301 -37.112 1 35.89 ? O5 ASC 501 C 1 HETATM 12 O O6 ASC . . . D 2 -14.853 8.532 -36.073 1 38.01 ? O6 ASC 501 C 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #