data_4RPH # _model_server_result.job_id yZ45fM7C9_oladmSlMaKLg _model_server_result.datetime_utc '2024-11-14 17:56:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4RPH # _exptl.entry_id 4RPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.17 _cell.angle_gamma 90 _cell.entry_id 4RPH _cell.length_a 171.73 _cell.length_b 99.47 _cell.length_c 100.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1,2 B,C,F,G,H,I,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 171.73 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 4RPH _atom_sites.fract_transf_matrix[1][1] 0.005823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002139 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD B 1 401 602 FAD FAD . E 3 GDU B 1 402 500 GDU GDU . F 2 FAD A 1 401 602 FAD FAD . G 3 GDU A 1 402 500 GDU GDU . H 2 FAD C 1 401 602 FAD FAD . I 3 GDU C 1 402 500 GDU GDU . J 4 HOH B 1 501 2 HOH HOH . J 4 HOH B 2 502 5 HOH HOH . J 4 HOH B 3 503 7 HOH HOH . J 4 HOH B 4 504 8 HOH HOH . J 4 HOH B 5 505 10 HOH HOH . J 4 HOH B 6 506 12 HOH HOH . J 4 HOH B 7 507 13 HOH HOH . J 4 HOH B 8 508 14 HOH HOH . J 4 HOH B 9 509 15 HOH HOH . J 4 HOH B 10 510 16 HOH HOH . J 4 HOH B 11 511 17 HOH HOH . J 4 HOH B 12 512 19 HOH HOH . J 4 HOH B 13 513 22 HOH HOH . J 4 HOH B 14 514 30 HOH HOH . J 4 HOH B 15 515 31 HOH HOH . J 4 HOH B 16 516 32 HOH HOH . J 4 HOH B 17 517 33 HOH HOH . J 4 HOH B 18 518 35 HOH HOH . J 4 HOH B 19 519 36 HOH HOH . J 4 HOH B 20 520 43 HOH HOH . J 4 HOH B 21 521 45 HOH HOH . J 4 HOH B 22 522 48 HOH HOH . J 4 HOH B 23 523 50 HOH HOH . J 4 HOH B 24 524 51 HOH HOH . J 4 HOH B 25 525 52 HOH HOH . J 4 HOH B 26 526 53 HOH HOH . J 4 HOH B 27 527 57 HOH HOH . J 4 HOH B 28 528 59 HOH HOH . J 4 HOH B 29 529 62 HOH HOH . J 4 HOH B 30 530 63 HOH HOH . J 4 HOH B 31 531 65 HOH HOH . J 4 HOH B 32 532 69 HOH HOH . J 4 HOH B 33 533 70 HOH HOH . J 4 HOH B 34 534 74 HOH HOH . J 4 HOH B 35 535 77 HOH HOH . J 4 HOH B 36 536 78 HOH HOH . J 4 HOH B 37 537 85 HOH HOH . J 4 HOH B 38 538 87 HOH HOH . J 4 HOH B 39 539 88 HOH HOH . J 4 HOH B 40 540 90 HOH HOH . J 4 HOH B 41 541 94 HOH HOH . J 4 HOH B 42 542 95 HOH HOH . J 4 HOH B 43 543 98 HOH HOH . J 4 HOH B 44 544 102 HOH HOH . J 4 HOH B 45 545 104 HOH HOH . J 4 HOH B 46 546 106 HOH HOH . J 4 HOH B 47 547 110 HOH HOH . J 4 HOH B 48 548 112 HOH HOH . J 4 HOH B 49 549 113 HOH HOH . J 4 HOH B 50 550 114 HOH HOH . J 4 HOH B 51 551 115 HOH HOH . J 4 HOH B 52 552 116 HOH HOH . J 4 HOH B 53 553 122 HOH HOH . J 4 HOH B 54 554 123 HOH HOH . J 4 HOH B 55 555 124 HOH HOH . J 4 HOH B 56 556 136 HOH HOH . J 4 HOH B 57 557 138 HOH HOH . J 4 HOH B 58 558 139 HOH HOH . J 4 HOH B 59 559 140 HOH HOH . J 4 HOH B 60 560 142 HOH HOH . K 4 HOH A 1 501 9 HOH HOH . K 4 HOH A 2 502 23 HOH HOH . K 4 HOH A 3 503 26 HOH HOH . K 4 HOH A 4 504 28 HOH HOH . K 4 HOH A 5 505 29 HOH HOH . K 4 HOH A 6 506 34 HOH HOH . K 4 HOH A 7 507 37 HOH HOH . K 4 HOH A 8 508 39 HOH HOH . K 4 HOH A 9 509 46 HOH HOH . K 4 HOH A 10 510 55 HOH HOH . K 4 HOH A 11 511 56 HOH HOH . K 4 HOH A 12 512 58 HOH HOH . K 4 HOH A 13 513 60 HOH HOH . K 4 HOH A 14 514 67 HOH HOH . K 4 HOH A 15 515 75 HOH HOH . K 4 HOH A 16 516 76 HOH HOH . K 4 HOH A 17 517 79 HOH HOH . K 4 HOH A 18 518 82 HOH HOH . K 4 HOH A 19 519 86 HOH HOH . K 4 HOH A 20 520 91 HOH HOH . K 4 HOH A 21 521 92 HOH HOH . K 4 HOH A 22 522 96 HOH HOH . K 4 HOH A 23 523 99 HOH HOH . K 4 HOH A 24 524 100 HOH HOH . K 4 HOH A 25 525 107 HOH HOH . K 4 HOH A 26 526 109 HOH HOH . K 4 HOH A 27 527 111 HOH HOH . K 4 HOH A 28 528 117 HOH HOH . K 4 HOH A 29 529 118 HOH HOH . K 4 HOH A 30 530 119 HOH HOH . K 4 HOH A 31 531 120 HOH HOH . K 4 HOH A 32 532 121 HOH HOH . K 4 HOH A 33 533 125 HOH HOH . K 4 HOH A 34 534 126 HOH HOH . K 4 HOH A 35 535 127 HOH HOH . K 4 HOH A 36 536 128 HOH HOH . K 4 HOH A 37 537 135 HOH HOH . K 4 HOH A 38 538 141 HOH HOH . L 4 HOH C 1 501 1 HOH HOH . L 4 HOH C 2 502 3 HOH HOH . L 4 HOH C 3 503 4 HOH HOH . L 4 HOH C 4 504 6 HOH HOH . L 4 HOH C 5 505 11 HOH HOH . L 4 HOH C 6 506 20 HOH HOH . L 4 HOH C 7 507 21 HOH HOH . L 4 HOH C 8 508 25 HOH HOH . L 4 HOH C 9 509 27 HOH HOH . L 4 HOH C 10 510 38 HOH HOH . L 4 HOH C 11 511 42 HOH HOH . L 4 HOH C 12 512 47 HOH HOH . L 4 HOH C 13 513 49 HOH HOH . L 4 HOH C 14 514 54 HOH HOH . L 4 HOH C 15 515 61 HOH HOH . L 4 HOH C 16 516 64 HOH HOH . L 4 HOH C 17 517 68 HOH HOH . L 4 HOH C 18 518 80 HOH HOH . L 4 HOH C 19 519 83 HOH HOH . L 4 HOH C 20 520 84 HOH HOH . L 4 HOH C 21 521 89 HOH HOH . L 4 HOH C 22 522 93 HOH HOH . L 4 HOH C 23 523 97 HOH HOH . L 4 HOH C 24 524 101 HOH HOH . L 4 HOH C 25 525 105 HOH HOH . L 4 HOH C 26 526 108 HOH HOH . L 4 HOH C 27 527 129 HOH HOH . L 4 HOH C 28 528 130 HOH HOH . L 4 HOH C 29 529 132 HOH HOH . L 4 HOH C 30 530 133 HOH HOH . L 4 HOH C 31 531 134 HOH HOH . L 4 HOH C 32 532 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . D 2 77.91 -12.781 26.59 0.76 67.83 ? PA FAD 401 B 1 HETATM 2 O O1A FAD . . . D 2 77.687 -13.599 25.316 0.76 65.31 ? O1A FAD 401 B 1 HETATM 3 O O2A FAD . . . D 2 77.132 -11.417 26.772 0.76 63.78 ? O2A FAD 401 B 1 HETATM 4 O O5B FAD . . . D 2 77.456 -14.035 27.481 0.76 63.92 ? O5B FAD 401 B 1 HETATM 5 C C5B FAD . . . D 2 76.922 -13.814 28.723 0.76 64.83 ? C5B FAD 401 B 1 HETATM 6 C C4B FAD . . . D 2 75.631 -14.565 29.11 0.76 69.17 ? C4B FAD 401 B 1 HETATM 7 O O4B FAD . . . D 2 75.586 -14.901 30.483 0.76 73.81 ? O4B FAD 401 B 1 HETATM 8 C C3B FAD . . . D 2 74.398 -13.776 28.81 0.76 74.67 ? C3B FAD 401 B 1 HETATM 9 O O3B FAD . . . D 2 73.587 -14.438 27.907 0.76 70.2 ? O3B FAD 401 B 1 HETATM 10 C C2B FAD . . . D 2 73.672 -13.705 29.991 0.76 69.34 ? C2B FAD 401 B 1 HETATM 11 O O2B FAD . . . D 2 72.274 -13.949 29.832 0.76 66.71 ? O2B FAD 401 B 1 HETATM 12 C C1B FAD . . . D 2 74.254 -14.84 30.846 0.76 68.45 ? C1B FAD 401 B 1 HETATM 13 N N9A FAD . . . D 2 74.188 -14.606 32.245 0.76 70.83 ? N9A FAD 401 B 1 HETATM 14 C C8A FAD . . . D 2 74.742 -13.576 32.899 0.76 66.39 ? C8A FAD 401 B 1 HETATM 15 N N7A FAD . . . D 2 74.48 -13.698 34.214 0.76 67.65 ? N7A FAD 401 B 1 HETATM 16 C C5A FAD . . . D 2 73.76 -14.812 34.389 0.76 66.05 ? C5A FAD 401 B 1 HETATM 17 C C6A FAD . . . D 2 73.215 -15.434 35.501 0.76 69.2 ? C6A FAD 401 B 1 HETATM 18 N N6A FAD . . . D 2 73.379 -14.891 36.748 0.76 65.11 ? N6A FAD 401 B 1 HETATM 19 N N1A FAD . . . D 2 72.522 -16.578 35.351 0.76 68.15 ? N1A FAD 401 B 1 HETATM 20 C C2A FAD . . . D 2 72.361 -17.114 34.125 0.76 67.28 ? C2A FAD 401 B 1 HETATM 21 N N3A FAD . . . D 2 72.873 -16.54 33.034 0.76 61.42 ? N3A FAD 401 B 1 HETATM 22 C C4A FAD . . . D 2 73.574 -15.391 33.14 0.76 65.17 ? C4A FAD 401 B 1 HETATM 23 N N1 FAD . . . D 2 82.439 -9.35 18.782 0.76 60.15 ? N1 FAD 401 B 1 HETATM 24 C C2 FAD . . . D 2 82.999 -9.674 17.49 0.76 64.23 ? C2 FAD 401 B 1 HETATM 25 O O2 FAD . . . D 2 83.798 -10.575 17.391 0.76 61.15 ? O2 FAD 401 B 1 HETATM 26 N N3 FAD . . . D 2 82.609 -8.95 16.327 0.76 60.02 ? N3 FAD 401 B 1 HETATM 27 C C4 FAD . . . D 2 81.671 -7.908 16.443 0.76 62.84 ? C4 FAD 401 B 1 HETATM 28 O O4 FAD . . . D 2 81.328 -7.277 15.46 0.76 64.84 ? O4 FAD 401 B 1 HETATM 29 C C4X FAD . . . D 2 81.102 -7.578 17.756 0.76 63.44 ? C4X FAD 401 B 1 HETATM 30 N N5 FAD . . . D 2 80.2 -6.576 17.847 0.76 65.47 ? N5 FAD 401 B 1 HETATM 31 C C5X FAD . . . D 2 79.675 -6.262 19.043 0.76 71.09 ? C5X FAD 401 B 1 HETATM 32 C C6 FAD . . . D 2 78.744 -5.214 19.096 0.76 67.45 ? C6 FAD 401 B 1 HETATM 33 C C7 FAD . . . D 2 78.171 -4.854 20.302 0.76 64.88 ? C7 FAD 401 B 1 HETATM 34 C C7M FAD . . . D 2 77.128 -3.662 20.325 0.76 61.4 ? C7M FAD 401 B 1 HETATM 35 C C8 FAD . . . D 2 78.523 -5.529 21.443 0.76 65.04 ? C8 FAD 401 B 1 HETATM 36 C C8M FAD . . . D 2 77.905 -5.145 22.73 0.76 67.56 ? C8M FAD 401 B 1 HETATM 37 C C9 FAD . . . D 2 79.451 -6.574 21.391 0.76 63.83 ? C9 FAD 401 B 1 HETATM 38 C C9A FAD . . . D 2 80.024 -6.931 20.164 0.76 68.93 ? C9A FAD 401 B 1 HETATM 39 N N10 FAD . . . D 2 80.924 -7.945 20.098 0.76 67.49 ? N10 FAD 401 B 1 HETATM 40 C C10 FAD . . . D 2 81.482 -8.286 18.893 0.76 61.7 ? C10 FAD 401 B 1 HETATM 41 C C1' FAD . . . D 2 81.301 -8.645 21.267 0.76 63.07 ? C1' FAD 401 B 1 HETATM 42 C C2' FAD . . . D 2 80.562 -10.013 21.599 0.76 67.55 ? C2' FAD 401 B 1 HETATM 43 O O2' FAD . . . D 2 79.165 -9.78 21.63 0.76 71.18 ? O2' FAD 401 B 1 HETATM 44 C C3' FAD . . . D 2 81.023 -10.833 22.827 0.76 65.77 ? C3' FAD 401 B 1 HETATM 45 O O3' FAD . . . D 2 82.306 -11.216 22.639 0.76 61.73 ? O3' FAD 401 B 1 HETATM 46 C C4' FAD . . . D 2 80.221 -12.062 23.032 0.76 62.82 ? C4' FAD 401 B 1 HETATM 47 O O4' FAD . . . D 2 78.919 -11.8 23.701 0.76 65.31 ? O4' FAD 401 B 1 HETATM 48 C C5' FAD . . . D 2 80.978 -13.169 23.79 0.76 57.66 ? C5' FAD 401 B 1 HETATM 49 O O5' FAD . . . D 2 80.237 -14.009 24.681 0.76 63.42 ? O5' FAD 401 B 1 HETATM 50 P P FAD . . . D 2 80.533 -13.939 26.189 0.76 54.11 ? P FAD 401 B 1 HETATM 51 O O1P FAD . . . D 2 79.628 -15.19 26.593 0.76 53.13 ? O1P FAD 401 B 1 HETATM 52 O O2P FAD . . . D 2 82.041 -13.909 26.652 0.76 49.92 ? O2P FAD 401 B 1 HETATM 53 O O3P FAD . . . D 2 79.53 -12.771 26.7 0.76 63.43 ? O3P FAD 401 B 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #