data_4RPH # _model_server_result.job_id 4w2somj6iX9OZRtrxEusxQ _model_server_result.datetime_utc '2024-11-14 17:58:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rph # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 4RPH # _exptl.entry_id 4RPH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.17 _cell.angle_gamma 90 _cell.entry_id 4RPH _cell.length_a 171.73 _cell.length_b 99.47 _cell.length_c 100.24 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RPH _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1,2 B,C,F,G,H,I,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 171.73 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 F N N ? 2 H N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 70 n n PA O2A FAD sing 71 n n PA O5B FAD sing 72 n n PA O3P FAD sing 73 n n O2A HOA2 FAD sing 74 n n O5B C5B FAD sing 75 n n C5B C4B FAD sing 76 n n C5B H51A FAD sing 77 n n C5B H52A FAD sing 78 n n C4B O4B FAD sing 79 n n C4B C3B FAD sing 80 n n C4B H4B FAD sing 81 n n O4B C1B FAD sing 82 n n C3B O3B FAD sing 83 n n C3B C2B FAD sing 84 n n C3B H3B FAD sing 85 n n O3B HO3A FAD sing 86 n n C2B O2B FAD sing 87 n n C2B C1B FAD sing 88 n n C2B H2B FAD sing 89 n n O2B HO2A FAD sing 90 n n C1B N9A FAD sing 91 n n C1B H1B FAD sing 92 n n N9A C8A FAD sing 93 n y N9A C4A FAD sing 94 n y C8A N7A FAD doub 95 n y C8A H8A FAD sing 96 n n N7A C5A FAD sing 97 n y C5A C6A FAD sing 98 n y C5A C4A FAD doub 99 n y C6A N6A FAD sing 100 n n C6A N1A FAD doub 101 n y N6A H61A FAD sing 102 n n N6A H62A FAD sing 103 n n N1A C2A FAD sing 104 n y C2A N3A FAD doub 105 n y C2A H2A FAD sing 106 n n N3A C4A FAD sing 107 n y N1 C2 FAD sing 108 n n N1 C10 FAD doub 109 n n C2 O2 FAD doub 110 n n C2 N3 FAD sing 111 n n N3 C4 FAD sing 112 n n N3 HN3 FAD sing 113 n n C4 O4 FAD doub 114 n n C4 C4X FAD sing 115 n n C4X N5 FAD doub 116 n n C4X C10 FAD sing 117 n n N5 C5X FAD sing 118 n n C5X C6 FAD doub 119 n y C5X C9A FAD sing 120 n y C6 C7 FAD sing 121 n y C6 H6 FAD sing 122 n n C7 C7M FAD sing 123 n n C7 C8 FAD doub 124 n y C7M HM71 FAD sing 125 n n C7M HM72 FAD sing 126 n n C7M HM73 FAD sing 127 n n C8 C8M FAD sing 128 n n C8 C9 FAD sing 129 n y C8M HM81 FAD sing 130 n n C8M HM82 FAD sing 131 n n C8M HM83 FAD sing 132 n n C9 C9A FAD doub 133 n y C9 H9 FAD sing 134 n n C9A N10 FAD sing 135 n n N10 C10 FAD sing 136 n n N10 C1' FAD sing 137 n n C1' C2' FAD sing 138 n n C1' "H1'1" FAD sing 139 n n C1' "H1'2" FAD sing 140 n n C2' O2' FAD sing 141 n n C2' C3' FAD sing 142 n n C2' H2' FAD sing 143 n n O2' HO2' FAD sing 144 n n C3' O3' FAD sing 145 n n C3' C4' FAD sing 146 n n C3' H3' FAD sing 147 n n O3' HO3' FAD sing 148 n n C4' O4' FAD sing 149 n n C4' C5' FAD sing 150 n n C4' H4' FAD sing 151 n n O4' HO4' FAD sing 152 n n C5' O5' FAD sing 153 n n C5' "H5'1" FAD sing 154 n n C5' "H5'2" FAD sing 155 n n O5' P FAD sing 156 n n P O1P FAD doub 157 n n P O2P FAD sing 158 n n P O3P FAD sing 159 n n O2P HOP2 FAD sing 160 n n # _atom_sites.entry_id 4RPH _atom_sites.fract_transf_matrix[1][1] 0.005823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002139 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010628 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 FAD B 1 401 602 FAD FAD . E 3 GDU B 1 402 500 GDU GDU . F 2 FAD A 1 401 602 FAD FAD . G 3 GDU A 1 402 500 GDU GDU . H 2 FAD C 1 401 602 FAD FAD . I 3 GDU C 1 402 500 GDU GDU . J 4 HOH B 1 501 2 HOH HOH . J 4 HOH B 2 502 5 HOH HOH . J 4 HOH B 3 503 7 HOH HOH . J 4 HOH B 4 504 8 HOH HOH . J 4 HOH B 5 505 10 HOH HOH . J 4 HOH B 6 506 12 HOH HOH . J 4 HOH B 7 507 13 HOH HOH . J 4 HOH B 8 508 14 HOH HOH . J 4 HOH B 9 509 15 HOH HOH . J 4 HOH B 10 510 16 HOH HOH . J 4 HOH B 11 511 17 HOH HOH . J 4 HOH B 12 512 19 HOH HOH . J 4 HOH B 13 513 22 HOH HOH . J 4 HOH B 14 514 30 HOH HOH . J 4 HOH B 15 515 31 HOH HOH . J 4 HOH B 16 516 32 HOH HOH . J 4 HOH B 17 517 33 HOH HOH . J 4 HOH B 18 518 35 HOH HOH . J 4 HOH B 19 519 36 HOH HOH . J 4 HOH B 20 520 43 HOH HOH . J 4 HOH B 21 521 45 HOH HOH . J 4 HOH B 22 522 48 HOH HOH . J 4 HOH B 23 523 50 HOH HOH . J 4 HOH B 24 524 51 HOH HOH . J 4 HOH B 25 525 52 HOH HOH . J 4 HOH B 26 526 53 HOH HOH . J 4 HOH B 27 527 57 HOH HOH . J 4 HOH B 28 528 59 HOH HOH . J 4 HOH B 29 529 62 HOH HOH . J 4 HOH B 30 530 63 HOH HOH . J 4 HOH B 31 531 65 HOH HOH . J 4 HOH B 32 532 69 HOH HOH . J 4 HOH B 33 533 70 HOH HOH . J 4 HOH B 34 534 74 HOH HOH . J 4 HOH B 35 535 77 HOH HOH . J 4 HOH B 36 536 78 HOH HOH . J 4 HOH B 37 537 85 HOH HOH . J 4 HOH B 38 538 87 HOH HOH . J 4 HOH B 39 539 88 HOH HOH . J 4 HOH B 40 540 90 HOH HOH . J 4 HOH B 41 541 94 HOH HOH . J 4 HOH B 42 542 95 HOH HOH . J 4 HOH B 43 543 98 HOH HOH . J 4 HOH B 44 544 102 HOH HOH . J 4 HOH B 45 545 104 HOH HOH . J 4 HOH B 46 546 106 HOH HOH . J 4 HOH B 47 547 110 HOH HOH . J 4 HOH B 48 548 112 HOH HOH . J 4 HOH B 49 549 113 HOH HOH . J 4 HOH B 50 550 114 HOH HOH . J 4 HOH B 51 551 115 HOH HOH . J 4 HOH B 52 552 116 HOH HOH . J 4 HOH B 53 553 122 HOH HOH . J 4 HOH B 54 554 123 HOH HOH . J 4 HOH B 55 555 124 HOH HOH . J 4 HOH B 56 556 136 HOH HOH . J 4 HOH B 57 557 138 HOH HOH . J 4 HOH B 58 558 139 HOH HOH . J 4 HOH B 59 559 140 HOH HOH . J 4 HOH B 60 560 142 HOH HOH . K 4 HOH A 1 501 9 HOH HOH . K 4 HOH A 2 502 23 HOH HOH . K 4 HOH A 3 503 26 HOH HOH . K 4 HOH A 4 504 28 HOH HOH . K 4 HOH A 5 505 29 HOH HOH . K 4 HOH A 6 506 34 HOH HOH . K 4 HOH A 7 507 37 HOH HOH . K 4 HOH A 8 508 39 HOH HOH . K 4 HOH A 9 509 46 HOH HOH . K 4 HOH A 10 510 55 HOH HOH . K 4 HOH A 11 511 56 HOH HOH . K 4 HOH A 12 512 58 HOH HOH . K 4 HOH A 13 513 60 HOH HOH . K 4 HOH A 14 514 67 HOH HOH . K 4 HOH A 15 515 75 HOH HOH . K 4 HOH A 16 516 76 HOH HOH . K 4 HOH A 17 517 79 HOH HOH . K 4 HOH A 18 518 82 HOH HOH . K 4 HOH A 19 519 86 HOH HOH . K 4 HOH A 20 520 91 HOH HOH . K 4 HOH A 21 521 92 HOH HOH . K 4 HOH A 22 522 96 HOH HOH . K 4 HOH A 23 523 99 HOH HOH . K 4 HOH A 24 524 100 HOH HOH . K 4 HOH A 25 525 107 HOH HOH . K 4 HOH A 26 526 109 HOH HOH . K 4 HOH A 27 527 111 HOH HOH . K 4 HOH A 28 528 117 HOH HOH . K 4 HOH A 29 529 118 HOH HOH . K 4 HOH A 30 530 119 HOH HOH . K 4 HOH A 31 531 120 HOH HOH . K 4 HOH A 32 532 121 HOH HOH . K 4 HOH A 33 533 125 HOH HOH . K 4 HOH A 34 534 126 HOH HOH . K 4 HOH A 35 535 127 HOH HOH . K 4 HOH A 36 536 128 HOH HOH . K 4 HOH A 37 537 135 HOH HOH . K 4 HOH A 38 538 141 HOH HOH . L 4 HOH C 1 501 1 HOH HOH . L 4 HOH C 2 502 3 HOH HOH . L 4 HOH C 3 503 4 HOH HOH . L 4 HOH C 4 504 6 HOH HOH . L 4 HOH C 5 505 11 HOH HOH . L 4 HOH C 6 506 20 HOH HOH . L 4 HOH C 7 507 21 HOH HOH . L 4 HOH C 8 508 25 HOH HOH . L 4 HOH C 9 509 27 HOH HOH . L 4 HOH C 10 510 38 HOH HOH . L 4 HOH C 11 511 42 HOH HOH . L 4 HOH C 12 512 47 HOH HOH . L 4 HOH C 13 513 49 HOH HOH . L 4 HOH C 14 514 54 HOH HOH . L 4 HOH C 15 515 61 HOH HOH . L 4 HOH C 16 516 64 HOH HOH . L 4 HOH C 17 517 68 HOH HOH . L 4 HOH C 18 518 80 HOH HOH . L 4 HOH C 19 519 83 HOH HOH . L 4 HOH C 20 520 84 HOH HOH . L 4 HOH C 21 521 89 HOH HOH . L 4 HOH C 22 522 93 HOH HOH . L 4 HOH C 23 523 97 HOH HOH . L 4 HOH C 24 524 101 HOH HOH . L 4 HOH C 25 525 105 HOH HOH . L 4 HOH C 26 526 108 HOH HOH . L 4 HOH C 27 527 129 HOH HOH . L 4 HOH C 28 528 130 HOH HOH . L 4 HOH C 29 529 132 HOH HOH . L 4 HOH C 30 530 133 HOH HOH . L 4 HOH C 31 531 134 HOH HOH . L 4 HOH C 32 532 137 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . F 2 43.667 -1.17 26.663 0.81 71.63 ? PA FAD 401 A 1 HETATM 2 O O1A FAD . . . F 2 44.455 -0.958 25.367 0.81 65.14 ? O1A FAD 401 A 1 HETATM 3 O O2A FAD . . . F 2 42.858 -2.513 26.86 0.81 71.38 ? O2A FAD 401 A 1 HETATM 4 O O5B FAD . . . F 2 45.003 -0.963 27.524 0.81 58.66 ? O5B FAD 401 A 1 HETATM 5 C C5B FAD . . . F 2 45.066 -1.476 28.793 0.81 62.27 ? C5B FAD 401 A 1 HETATM 6 C C4B FAD . . . F 2 46.269 -2.368 29.156 0.81 64.2 ? C4B FAD 401 A 1 HETATM 7 O O4B FAD . . . F 2 46.596 -2.308 30.531 0.81 65.68 ? O4B FAD 401 A 1 HETATM 8 C C3B FAD . . . F 2 46.027 -3.805 28.828 0.81 71.29 ? C3B FAD 401 A 1 HETATM 9 O O3B FAD . . . F 2 46.847 -4.232 27.8 0.81 64.59 ? O3B FAD 401 A 1 HETATM 10 C C2B FAD . . . F 2 46.393 -4.541 29.948 0.81 73.67 ? C2B FAD 401 A 1 HETATM 11 O O2B FAD . . . F 2 47.27 -5.634 29.67 0.81 64.53 ? O2B FAD 401 A 1 HETATM 12 C C1B FAD . . . F 2 47.144 -3.539 30.84 0.81 66.73 ? C1B FAD 401 A 1 HETATM 13 N N9A FAD . . . F 2 46.97 -3.768 32.231 0.81 67.44 ? N9A FAD 401 A 1 HETATM 14 C C8A FAD . . . F 2 45.802 -3.814 32.885 0.81 62.93 ? C8A FAD 401 A 1 HETATM 15 N N7A FAD . . . F 2 46.035 -4.05 34.19 0.81 57.92 ? N7A FAD 401 A 1 HETATM 16 C C5A FAD . . . F 2 47.358 -4.15 34.36 0.81 62.27 ? C5A FAD 401 A 1 HETATM 17 C C6A FAD . . . F 2 48.168 -4.38 35.46 0.81 61.61 ? C6A FAD 401 A 1 HETATM 18 N N6A FAD . . . F 2 47.617 -4.562 36.702 0.81 62.52 ? N6A FAD 401 A 1 HETATM 19 N N1A FAD . . . F 2 49.505 -4.425 35.305 0.81 68.73 ? N1A FAD 401 A 1 HETATM 20 C C2A FAD . . . F 2 50.051 -4.246 34.087 0.81 66.18 ? C2A FAD 401 A 1 HETATM 21 N N3A FAD . . . F 2 49.298 -4.023 33.007 0.81 64.79 ? N3A FAD 401 A 1 HETATM 22 C C4A FAD . . . F 2 47.954 -3.971 33.118 0.81 67.33 ? C4A FAD 401 A 1 HETATM 23 N N1 FAD . . . F 2 38.349 1.357 18.883 0.81 57.81 ? N1 FAD 401 A 1 HETATM 24 C C2 FAD . . . F 2 38.345 2.021 17.603 0.81 61.15 ? C2 FAD 401 A 1 HETATM 25 O O2 FAD . . . F 2 38.708 3.172 17.519 0.81 60.71 ? O2 FAD 401 A 1 HETATM 26 N N3 FAD . . . F 2 37.922 1.328 16.437 0.81 67.22 ? N3 FAD 401 A 1 HETATM 27 C C4 FAD . . . F 2 37.502 -0.013 16.534 0.81 67.27 ? C4 FAD 401 A 1 HETATM 28 O O4 FAD . . . F 2 37.128 -0.605 15.538 0.81 67.33 ? O4 FAD 401 A 1 HETATM 29 C C4X FAD . . . F 2 37.504 -0.698 17.839 0.81 66.74 ? C4X FAD 401 A 1 HETATM 30 N N5 FAD . . . F 2 37.104 -1.991 17.934 0.81 68.27 ? N5 FAD 401 A 1 HETATM 31 C C5X FAD . . . F 2 37.107 -2.601 19.135 0.81 73.39 ? C5X FAD 401 A 1 HETATM 32 C C6 FAD . . . F 2 36.683 -3.939 19.204 0.81 71.05 ? C6 FAD 401 A 1 HETATM 33 C C7 FAD . . . F 2 36.678 -4.597 20.425 0.81 65.64 ? C7 FAD 401 A 1 HETATM 34 C C7M FAD . . . F 2 36.198 -6.104 20.479 0.81 61.18 ? C7M FAD 401 A 1 HETATM 35 C C8 FAD . . . F 2 37.084 -3.946 21.563 0.81 69.62 ? C8 FAD 401 A 1 HETATM 36 C C8M FAD . . . F 2 37.072 -4.653 22.869 0.81 70.2 ? C8M FAD 401 A 1 HETATM 37 C C9 FAD . . . F 2 37.503 -2.618 21.493 0.81 70.21 ? C9 FAD 401 A 1 HETATM 38 C C9A FAD . . . F 2 37.508 -1.955 20.256 0.81 69.83 ? C9A FAD 401 A 1 HETATM 39 N N10 FAD . . . F 2 37.915 -0.663 20.181 0.81 64.71 ? N10 FAD 401 A 1 HETATM 40 C C10 FAD . . . F 2 37.921 -0.012 18.977 0.81 62.82 ? C10 FAD 401 A 1 HETATM 41 C C1' FAD . . . F 2 38.331 0.021 21.345 0.81 60.84 ? C1' FAD 401 A 1 HETATM 42 C C2' FAD . . . F 2 39.889 0.063 21.673 0.81 61.59 ? C2' FAD 401 A 1 HETATM 43 O O2' FAD . . . F 2 40.395 -1.26 21.611 0.81 70.18 ? O2' FAD 401 A 1 HETATM 44 C C3' FAD . . . F 2 40.396 0.792 22.942 0.81 65.52 ? C3' FAD 401 A 1 HETATM 45 O O3' FAD . . . F 2 40.035 2.095 22.882 0.81 69.76 ? O3' FAD 401 A 1 HETATM 46 C C4' FAD . . . F 2 41.874 0.738 23.07 0.81 64.54 ? C4' FAD 401 A 1 HETATM 47 O O4' FAD . . . F 2 42.371 -0.577 23.557 0.81 72.34 ? O4' FAD 401 A 1 HETATM 48 C C5' FAD . . . F 2 42.486 1.856 23.937 0.81 63.06 ? C5' FAD 401 A 1 HETATM 49 O O5' FAD . . . F 2 43.579 1.519 24.801 0.81 66.71 ? O5' FAD 401 A 1 HETATM 50 P P FAD . . . F 2 43.408 1.698 26.319 0.81 53.69 ? P FAD 401 A 1 HETATM 51 O O1P FAD . . . F 2 44.948 1.502 26.688 0.81 54.53 ? O1P FAD 401 A 1 HETATM 52 O O2P FAD . . . F 2 42.665 2.99 26.838 0.81 54.81 ? O2P FAD 401 A 1 HETATM 53 O O3P FAD . . . F 2 42.874 0.242 26.794 0.81 56.29 ? O3P FAD 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 53 #