data_4RPM # _model_server_result.job_id Wov-pr1GIPt2DILXV3Mxiw _model_server_result.datetime_utc '2024-10-10 03:28:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rpm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4RPM # _exptl.entry_id 4RPM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 116.158 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEXANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RPM _cell.length_a 45.67 _cell.length_b 52.36 _cell.length_c 168.03 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RPM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 9 A MSE 1 1_555 A N ILE 10 A ILE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C SER 38 A SER 30 1_555 A N MSE 39 A MSE 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 39 A MSE 31 1_555 A N ASP 40 A ASP 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C ALA 192 A ALA 184 1_555 A N MSE 193 A MSE 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 A C MSE 193 A MSE 185 1_555 A N MSE 194 A MSE 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C MSE 194 A MSE 186 1_555 A N ALA 195 A ALA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale7 A C ASN 336 A ASN 328 1_555 A N MSE 337 A MSE 329 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C MSE 337 A MSE 329 1_555 A N THR 338 A THR 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale9 A C GLU 339 A GLU 331 1_555 A N MSE 340 A MSE 332 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale10 A C GLU 339 A GLU 331 1_555 A N MSE 340 A MSE 332 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.333 ? covale ? covale11 A C MSE 340 A MSE 332 1_555 A N VAL 341 A VAL 333 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 A C MSE 340 A MSE 332 1_555 A N VAL 341 A VAL 333 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale13 A C LEU 380 A LEU 372 1_555 A N MSE 381 A MSE 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 A C MSE 381 A MSE 373 1_555 A N ARG 382 A ARG 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C6 H12 O2' _chem_comp.formula_weight 116.158 _chem_comp.id 6NA _chem_comp.mon_nstd_flag . _chem_comp.name 'HEXANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA C 6NA sing 1 n n CA CB 6NA sing 2 n n CA HAC1 6NA sing 3 n n CA HAC2 6NA sing 4 n n C O 6NA doub 5 n n C OXT 6NA sing 6 n n CB CG 6NA sing 7 n n CB HBC1 6NA sing 8 n n CB HBC2 6NA sing 9 n n CG CD 6NA sing 10 n n CG HGC1 6NA sing 11 n n CG HGC2 6NA sing 12 n n CD C6 6NA sing 13 n n CD HDC1 6NA sing 14 n n CD HDC2 6NA sing 15 n n C6 H6C1 6NA sing 16 n n C6 H6C2 6NA sing 17 n n C6 H6C3 6NA sing 18 n n OXT HXT 6NA sing 19 n n # _atom_sites.entry_id 4RPM _atom_sites.fract_transf_matrix[1][1] 0.021896 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6NA A 1 401 1 6NA SHX . C 3 HXC A 1 402 1 HXC HXC . D 4 HOH A 1 501 1 HOH HOH . D 4 HOH A 2 502 2 HOH HOH . D 4 HOH A 3 503 4 HOH HOH . D 4 HOH A 4 504 5 HOH HOH . D 4 HOH A 5 505 8 HOH HOH . D 4 HOH A 6 506 10 HOH HOH . D 4 HOH A 7 507 12 HOH HOH . D 4 HOH A 8 508 14 HOH HOH . D 4 HOH A 9 509 15 HOH HOH . D 4 HOH A 10 510 16 HOH HOH . D 4 HOH A 11 511 17 HOH HOH . D 4 HOH A 12 512 20 HOH HOH . D 4 HOH A 13 513 22 HOH HOH . D 4 HOH A 14 514 23 HOH HOH . D 4 HOH A 15 515 25 HOH HOH . D 4 HOH A 16 516 27 HOH HOH . D 4 HOH A 17 517 29 HOH HOH . D 4 HOH A 18 518 30 HOH HOH . D 4 HOH A 19 519 31 HOH HOH . D 4 HOH A 20 520 34 HOH HOH . D 4 HOH A 21 521 40 HOH HOH . D 4 HOH A 22 522 41 HOH HOH . D 4 HOH A 23 523 42 HOH HOH . D 4 HOH A 24 524 44 HOH HOH . D 4 HOH A 25 525 46 HOH HOH . D 4 HOH A 26 526 47 HOH HOH . D 4 HOH A 27 527 48 HOH HOH . D 4 HOH A 28 528 49 HOH HOH . D 4 HOH A 29 529 53 HOH HOH . D 4 HOH A 30 530 58 HOH HOH . D 4 HOH A 31 531 59 HOH HOH . D 4 HOH A 32 532 60 HOH HOH . D 4 HOH A 33 533 61 HOH HOH . D 4 HOH A 34 534 63 HOH HOH . D 4 HOH A 35 535 64 HOH HOH . D 4 HOH A 36 536 66 HOH HOH . D 4 HOH A 37 537 69 HOH HOH . D 4 HOH A 38 538 72 HOH HOH . D 4 HOH A 39 539 74 HOH HOH . D 4 HOH A 40 540 76 HOH HOH . D 4 HOH A 41 541 78 HOH HOH . D 4 HOH A 42 542 82 HOH HOH . D 4 HOH A 43 543 83 HOH HOH . D 4 HOH A 44 544 86 HOH HOH . D 4 HOH A 45 545 87 HOH HOH . D 4 HOH A 46 546 93 HOH HOH . D 4 HOH A 47 547 98 HOH HOH . D 4 HOH A 48 548 103 HOH HOH . D 4 HOH A 49 549 104 HOH HOH . D 4 HOH A 50 550 105 HOH HOH . D 4 HOH A 51 551 106 HOH HOH . D 4 HOH A 52 552 107 HOH HOH . D 4 HOH A 53 553 109 HOH HOH . D 4 HOH A 54 554 115 HOH HOH . D 4 HOH A 55 555 119 HOH HOH . D 4 HOH A 56 556 120 HOH HOH . D 4 HOH A 57 557 121 HOH HOH . D 4 HOH A 58 558 122 HOH HOH . D 4 HOH A 59 559 123 HOH HOH . D 4 HOH A 60 560 124 HOH HOH . D 4 HOH A 61 561 132 HOH HOH . D 4 HOH A 62 562 134 HOH HOH . D 4 HOH A 63 563 136 HOH HOH . D 4 HOH A 64 564 143 HOH HOH . D 4 HOH A 65 565 144 HOH HOH . D 4 HOH A 66 566 156 HOH HOH . D 4 HOH A 67 567 157 HOH HOH . D 4 HOH A 68 568 159 HOH HOH . D 4 HOH A 69 569 168 HOH HOH . D 4 HOH A 70 570 171 HOH HOH . D 4 HOH A 71 571 174 HOH HOH . D 4 HOH A 72 572 178 HOH HOH . D 4 HOH A 73 573 179 HOH HOH . D 4 HOH A 74 574 180 HOH HOH . D 4 HOH A 75 575 181 HOH HOH . D 4 HOH A 76 576 182 HOH HOH . D 4 HOH A 77 577 183 HOH HOH . D 4 HOH A 78 578 184 HOH HOH . D 4 HOH A 79 579 185 HOH HOH . D 4 HOH A 80 580 186 HOH HOH . D 4 HOH A 81 581 187 HOH HOH . D 4 HOH A 82 582 188 HOH HOH . D 4 HOH A 83 583 189 HOH HOH . D 4 HOH A 84 584 190 HOH HOH . D 4 HOH A 85 585 191 HOH HOH . D 4 HOH A 86 586 192 HOH HOH . D 4 HOH A 87 587 193 HOH HOH . D 4 HOH A 88 588 194 HOH HOH . D 4 HOH A 89 589 195 HOH HOH . D 4 HOH A 90 590 196 HOH HOH . D 4 HOH A 91 591 197 HOH HOH . D 4 HOH A 92 592 198 HOH HOH . D 4 HOH A 93 593 199 HOH HOH . D 4 HOH A 94 594 200 HOH HOH . D 4 HOH A 95 595 201 HOH HOH . D 4 HOH A 96 596 202 HOH HOH . D 4 HOH A 97 597 203 HOH HOH . D 4 HOH A 98 598 204 HOH HOH . D 4 HOH A 99 599 205 HOH HOH . D 4 HOH A 100 600 206 HOH HOH . D 4 HOH A 101 601 207 HOH HOH . D 4 HOH A 102 602 208 HOH HOH . D 4 HOH A 103 603 209 HOH HOH . D 4 HOH A 104 604 210 HOH HOH . D 4 HOH A 105 605 211 HOH HOH . D 4 HOH A 106 606 212 HOH HOH . D 4 HOH A 107 607 213 HOH HOH . D 4 HOH A 108 608 214 HOH HOH . D 4 HOH A 109 609 215 HOH HOH . D 4 HOH A 110 610 216 HOH HOH . D 4 HOH A 111 611 217 HOH HOH . D 4 HOH A 112 612 218 HOH HOH . D 4 HOH A 113 613 219 HOH HOH . D 4 HOH A 114 614 220 HOH HOH . D 4 HOH A 115 615 221 HOH HOH . D 4 HOH A 116 616 222 HOH HOH . D 4 HOH A 117 617 223 HOH HOH . D 4 HOH A 118 618 224 HOH HOH . D 4 HOH A 119 619 225 HOH HOH . D 4 HOH A 120 620 226 HOH HOH . D 4 HOH A 121 621 227 HOH HOH . D 4 HOH A 122 622 228 HOH HOH . D 4 HOH A 123 623 229 HOH HOH . D 4 HOH A 124 624 230 HOH HOH . D 4 HOH A 125 625 231 HOH HOH . D 4 HOH A 126 626 232 HOH HOH . D 4 HOH A 127 627 233 HOH HOH . D 4 HOH A 128 628 234 HOH HOH . D 4 HOH A 129 629 235 HOH HOH . D 4 HOH A 130 630 236 HOH HOH . D 4 HOH A 131 631 237 HOH HOH . D 4 HOH A 132 632 238 HOH HOH . D 4 HOH A 133 633 239 HOH HOH . D 4 HOH A 134 634 240 HOH HOH . D 4 HOH A 135 635 241 HOH HOH . D 4 HOH A 136 636 242 HOH HOH . D 4 HOH A 137 637 243 HOH HOH . D 4 HOH A 138 638 244 HOH HOH . D 4 HOH A 139 639 245 HOH HOH . D 4 HOH A 140 640 246 HOH HOH . D 4 HOH A 141 641 247 HOH HOH . D 4 HOH A 142 642 248 HOH HOH . D 4 HOH A 143 643 249 HOH HOH . D 4 HOH A 144 644 250 HOH HOH . D 4 HOH A 145 645 251 HOH HOH . D 4 HOH A 146 646 252 HOH HOH . D 4 HOH A 147 647 253 HOH HOH . D 4 HOH A 148 648 254 HOH HOH . D 4 HOH A 149 649 255 HOH HOH . D 4 HOH A 150 650 256 HOH HOH . D 4 HOH A 151 651 257 HOH HOH . D 4 HOH A 152 652 258 HOH HOH . D 4 HOH A 153 653 259 HOH HOH . D 4 HOH A 154 654 260 HOH HOH . D 4 HOH A 155 655 261 HOH HOH . D 4 HOH A 156 656 262 HOH HOH . D 4 HOH A 157 657 263 HOH HOH . D 4 HOH A 158 658 264 HOH HOH . D 4 HOH A 159 659 265 HOH HOH . D 4 HOH A 160 660 266 HOH HOH . D 4 HOH A 161 661 267 HOH HOH . D 4 HOH A 162 662 268 HOH HOH . D 4 HOH A 163 663 269 HOH HOH . D 4 HOH A 164 664 270 HOH HOH . D 4 HOH A 165 665 271 HOH HOH . D 4 HOH A 166 666 272 HOH HOH . D 4 HOH A 167 667 273 HOH HOH . D 4 HOH A 168 668 274 HOH HOH . D 4 HOH A 169 669 275 HOH HOH . D 4 HOH A 170 670 276 HOH HOH . D 4 HOH A 171 671 277 HOH HOH . D 4 HOH A 172 672 278 HOH HOH . D 4 HOH A 173 673 279 HOH HOH . D 4 HOH A 174 674 280 HOH HOH . D 4 HOH A 175 675 281 HOH HOH . D 4 HOH A 176 676 282 HOH HOH . D 4 HOH A 177 677 283 HOH HOH . D 4 HOH A 178 678 284 HOH HOH . D 4 HOH A 179 679 285 HOH HOH . D 4 HOH A 180 680 286 HOH HOH . D 4 HOH A 181 681 287 HOH HOH . D 4 HOH A 182 682 288 HOH HOH . D 4 HOH A 183 683 289 HOH HOH . D 4 HOH A 184 684 290 HOH HOH . D 4 HOH A 185 685 291 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA 6NA . . . B 2 26.621 34.916 17.38 1 18.71 ? CA 6NA 401 A 1 HETATM 2 C C 6NA . . . B 2 25.804 33.95 18.215 1 19.99 ? C 6NA 401 A 1 HETATM 3 O O 6NA . . . B 2 26.625 33.413 19.215 1 16.59 ? O 6NA 401 A 1 HETATM 4 C CB 6NA . . . B 2 27.715 34.214 16.6 1 18.24 ? CB 6NA 401 A 1 HETATM 5 C CG 6NA . . . B 2 27.215 33.191 15.602 1 20.82 ? CG 6NA 401 A 1 HETATM 6 C CD 6NA . . . B 2 28.354 32.615 14.784 1 20.78 ? CD 6NA 401 A 1 HETATM 7 C C6 6NA . . . B 2 27.902 31.646 13.707 1 22.88 ? C6 6NA 401 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #