data_4RQ9
#
_model_server_result.job_id            fpjlVRmk2dxCiXqa7-4oJg 
_model_server_result.datetime_utc      '2025-07-10 08:29:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rq9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":404}' 
#
_entry.id    4RQ9 
#
_exptl.entry_id    4RQ9 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RQ9 
_cell.length_a            131.813 
_cell.length_b            131.813 
_cell.length_c            97.218 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RQ9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 32.406 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 E N N 
? 5 F N N 
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
? 5 K N N 
? 5 L N N 
? 5 M N N 
? 5 N N N 
? 5 O N N 
? 5 P N N 
? 5 Q N N 
? 5 R N N 
? 5 S N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 218 n n 
C1 C2 GOL sing 219 n n 
C1 H11 GOL sing 220 n n 
C1 H12 GOL sing 221 n n 
O1 HO1 GOL sing 222 n n 
C2 O2 GOL sing 223 n n 
C2 C3 GOL sing 224 n n 
C2 H2 GOL sing 225 n n 
O2 HO2 GOL sing 226 n n 
C3 O3 GOL sing 227 n n 
C3 H31 GOL sing 228 n n 
C3 H32 GOL sing 229 n n 
O3 HO3 GOL sing 230 n n 
#
_atom_sites.entry_id                     4RQ9 
_atom_sites.fract_transf_matrix[1][1]    0.007587 
_atom_sites.fract_transf_matrix[1][2]    0.00438 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00876 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010286 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BLA A 1 401 1 BLA BLA . 
C 3 SRT A 1 402 2 SRT SRT . 
D 4 EDO A 1 403 3 EDO EDO . 
E 5 GOL A 1 404 4 GOL GOL . 
F 5 GOL A 1 405 5 GOL GOL . 
G 5 GOL A 1 406 6 GOL GOL . 
H 5 GOL A 1 407 7 GOL GOL . 
I 5 GOL A 1 408 8 GOL GOL . 
J 5 GOL A 1 409 9 GOL GOL . 
K 5 GOL A 1 410 10 GOL GOL . 
L 5 GOL A 1 411 11 GOL GOL . 
M 5 GOL A 1 412 12 GOL GOL . 
N 5 GOL A 1 413 13 GOL GOL . 
O 5 GOL A 1 414 14 GOL GOL . 
P 5 GOL A 1 415 15 GOL GOL . 
Q 5 GOL A 1 416 16 GOL GOL . 
R 5 GOL A 1 417 17 GOL GOL . 
S 5 GOL A 1 418 18 GOL GOL . 
T 6 HOH A 1 501 19 HOH HOH . 
T 6 HOH A 2 502 20 HOH HOH . 
T 6 HOH A 3 503 21 HOH HOH . 
T 6 HOH A 4 504 22 HOH HOH . 
T 6 HOH A 5 505 23 HOH HOH . 
T 6 HOH A 6 506 24 HOH HOH . 
T 6 HOH A 7 507 25 HOH HOH . 
T 6 HOH A 8 508 26 HOH HOH . 
T 6 HOH A 9 509 27 HOH HOH . 
T 6 HOH A 10 510 28 HOH HOH . 
T 6 HOH A 11 511 29 HOH HOH . 
T 6 HOH A 12 512 30 HOH HOH . 
T 6 HOH A 13 513 31 HOH HOH . 
T 6 HOH A 14 514 32 HOH HOH . 
T 6 HOH A 15 515 33 HOH HOH . 
T 6 HOH A 16 516 34 HOH HOH . 
T 6 HOH A 17 517 35 HOH HOH . 
T 6 HOH A 18 518 36 HOH HOH . 
T 6 HOH A 19 519 37 HOH HOH . 
T 6 HOH A 20 520 38 HOH HOH . 
T 6 HOH A 21 521 39 HOH HOH . 
T 6 HOH A 22 522 40 HOH HOH . 
T 6 HOH A 23 523 41 HOH HOH . 
T 6 HOH A 24 524 42 HOH HOH . 
T 6 HOH A 25 525 43 HOH HOH . 
T 6 HOH A 26 526 44 HOH HOH . 
T 6 HOH A 27 527 45 HOH HOH . 
T 6 HOH A 28 528 46 HOH HOH . 
T 6 HOH A 29 529 47 HOH HOH . 
T 6 HOH A 30 530 48 HOH HOH . 
T 6 HOH A 31 531 49 HOH HOH . 
T 6 HOH A 32 532 50 HOH HOH . 
T 6 HOH A 33 533 51 HOH HOH . 
T 6 HOH A 34 534 52 HOH HOH . 
T 6 HOH A 35 535 53 HOH HOH . 
T 6 HOH A 36 536 54 HOH HOH . 
T 6 HOH A 37 537 55 HOH HOH . 
T 6 HOH A 38 538 56 HOH HOH . 
T 6 HOH A 39 539 57 HOH HOH . 
T 6 HOH A 40 540 58 HOH HOH . 
T 6 HOH A 41 541 59 HOH HOH . 
T 6 HOH A 42 542 60 HOH HOH . 
T 6 HOH A 43 543 61 HOH HOH . 
T 6 HOH A 44 544 62 HOH HOH . 
T 6 HOH A 45 545 63 HOH HOH . 
T 6 HOH A 46 546 64 HOH HOH . 
T 6 HOH A 47 547 65 HOH HOH . 
T 6 HOH A 48 548 66 HOH HOH . 
T 6 HOH A 49 549 67 HOH HOH . 
T 6 HOH A 50 550 68 HOH HOH . 
T 6 HOH A 51 551 69 HOH HOH . 
T 6 HOH A 52 552 70 HOH HOH . 
T 6 HOH A 53 553 71 HOH HOH . 
T 6 HOH A 54 554 72 HOH HOH . 
T 6 HOH A 55 555 73 HOH HOH . 
T 6 HOH A 56 556 74 HOH HOH . 
T 6 HOH A 57 557 75 HOH HOH . 
T 6 HOH A 58 558 76 HOH HOH . 
T 6 HOH A 59 559 77 HOH HOH . 
T 6 HOH A 60 560 78 HOH HOH . 
T 6 HOH A 61 561 79 HOH HOH . 
T 6 HOH A 62 562 80 HOH HOH . 
T 6 HOH A 63 563 81 HOH HOH . 
T 6 HOH A 64 564 82 HOH HOH . 
T 6 HOH A 65 565 83 HOH HOH . 
T 6 HOH A 66 566 84 HOH HOH . 
T 6 HOH A 67 567 85 HOH HOH . 
T 6 HOH A 68 568 86 HOH HOH . 
T 6 HOH A 69 569 87 HOH HOH . 
T 6 HOH A 70 570 88 HOH HOH . 
T 6 HOH A 71 571 89 HOH HOH . 
T 6 HOH A 72 572 90 HOH HOH . 
T 6 HOH A 73 573 91 HOH HOH . 
T 6 HOH A 74 574 92 HOH HOH . 
T 6 HOH A 75 575 93 HOH HOH . 
T 6 HOH A 76 576 94 HOH HOH . 
T 6 HOH A 77 577 95 HOH HOH . 
T 6 HOH A 78 578 96 HOH HOH . 
T 6 HOH A 79 579 97 HOH HOH . 
T 6 HOH A 80 580 98 HOH HOH . 
T 6 HOH A 81 581 99 HOH HOH . 
T 6 HOH A 82 582 100 HOH HOH . 
T 6 HOH A 83 583 101 HOH HOH . 
T 6 HOH A 84 584 102 HOH HOH . 
T 6 HOH A 85 585 103 HOH HOH . 
T 6 HOH A 86 586 104 HOH HOH . 
T 6 HOH A 87 587 105 HOH HOH . 
T 6 HOH A 88 588 106 HOH HOH . 
T 6 HOH A 89 589 107 HOH HOH . 
T 6 HOH A 90 590 108 HOH HOH . 
T 6 HOH A 91 591 109 HOH HOH . 
T 6 HOH A 92 592 110 HOH HOH . 
T 6 HOH A 93 593 111 HOH HOH . 
T 6 HOH A 94 594 112 HOH HOH . 
T 6 HOH A 95 595 113 HOH HOH . 
T 6 HOH A 96 596 114 HOH HOH . 
T 6 HOH A 97 597 115 HOH HOH . 
T 6 HOH A 98 598 116 HOH HOH . 
T 6 HOH A 99 599 117 HOH HOH . 
T 6 HOH A 100 600 118 HOH HOH . 
T 6 HOH A 101 601 119 HOH HOH . 
T 6 HOH A 102 602 120 HOH HOH . 
T 6 HOH A 103 603 121 HOH HOH . 
T 6 HOH A 104 604 122 HOH HOH . 
T 6 HOH A 105 605 123 HOH HOH . 
T 6 HOH A 106 606 124 HOH HOH . 
T 6 HOH A 107 607 125 HOH HOH . 
T 6 HOH A 108 608 126 HOH HOH . 
T 6 HOH A 109 609 127 HOH HOH . 
T 6 HOH A 110 610 128 HOH HOH . 
T 6 HOH A 111 611 129 HOH HOH . 
T 6 HOH A 112 612 130 HOH HOH . 
T 6 HOH A 113 613 131 HOH HOH . 
T 6 HOH A 114 614 132 HOH HOH . 
T 6 HOH A 115 615 133 HOH HOH . 
T 6 HOH A 116 616 134 HOH HOH . 
T 6 HOH A 117 617 135 HOH HOH . 
T 6 HOH A 118 618 136 HOH HOH . 
T 6 HOH A 119 619 137 HOH HOH . 
T 6 HOH A 120 620 138 HOH HOH . 
T 6 HOH A 121 621 139 HOH HOH . 
T 6 HOH A 122 622 140 HOH HOH . 
T 6 HOH A 123 623 141 HOH HOH . 
T 6 HOH A 124 624 142 HOH HOH . 
T 6 HOH A 125 625 143 HOH HOH . 
T 6 HOH A 126 626 144 HOH HOH . 
T 6 HOH A 127 627 145 HOH HOH . 
T 6 HOH A 128 628 146 HOH HOH . 
T 6 HOH A 129 629 147 HOH HOH . 
T 6 HOH A 130 630 148 HOH HOH . 
T 6 HOH A 131 631 149 HOH HOH . 
T 6 HOH A 132 632 150 HOH HOH . 
T 6 HOH A 133 633 151 HOH HOH . 
T 6 HOH A 134 634 152 HOH HOH . 
T 6 HOH A 135 635 153 HOH HOH . 
T 6 HOH A 136 636 154 HOH HOH . 
T 6 HOH A 137 637 155 HOH HOH . 
T 6 HOH A 138 638 156 HOH HOH . 
T 6 HOH A 139 639 157 HOH HOH . 
T 6 HOH A 140 640 158 HOH HOH . 
T 6 HOH A 141 641 159 HOH HOH . 
T 6 HOH A 142 642 160 HOH HOH . 
T 6 HOH A 143 643 161 HOH HOH . 
T 6 HOH A 144 644 162 HOH HOH . 
T 6 HOH A 145 645 163 HOH HOH . 
T 6 HOH A 146 646 164 HOH HOH . 
T 6 HOH A 147 647 165 HOH HOH . 
T 6 HOH A 148 648 166 HOH HOH . 
T 6 HOH A 149 649 167 HOH HOH . 
T 6 HOH A 150 650 168 HOH HOH . 
T 6 HOH A 151 651 169 HOH HOH . 
T 6 HOH A 152 652 170 HOH HOH . 
T 6 HOH A 153 653 171 HOH HOH . 
T 6 HOH A 154 654 172 HOH HOH . 
T 6 HOH A 155 655 173 HOH HOH . 
T 6 HOH A 156 656 174 HOH HOH . 
T 6 HOH A 157 657 175 HOH HOH . 
T 6 HOH A 158 658 176 HOH HOH . 
T 6 HOH A 159 659 177 HOH HOH . 
T 6 HOH A 160 660 178 HOH HOH . 
T 6 HOH A 161 661 179 HOH HOH . 
T 6 HOH A 162 662 180 HOH HOH . 
T 6 HOH A 163 663 181 HOH HOH . 
T 6 HOH A 164 664 182 HOH HOH . 
T 6 HOH A 165 665 183 HOH HOH . 
T 6 HOH A 166 666 184 HOH HOH . 
T 6 HOH A 167 667 185 HOH HOH . 
T 6 HOH A 168 668 186 HOH HOH . 
T 6 HOH A 169 669 187 HOH HOH . 
T 6 HOH A 170 670 188 HOH HOH . 
T 6 HOH A 171 671 189 HOH HOH . 
T 6 HOH A 172 672 190 HOH HOH . 
T 6 HOH A 173 673 191 HOH HOH . 
T 6 HOH A 174 674 192 HOH HOH . 
T 6 HOH A 175 675 193 HOH HOH . 
T 6 HOH A 176 676 194 HOH HOH . 
T 6 HOH A 177 677 195 HOH HOH . 
T 6 HOH A 178 678 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 5 -78.861 24.225 20.154 1 77.84 ? C1 GOL 404 A 1 
HETATM 2 O O1 GOL . . . E 5 -79.953 24.495 21.051 1 81.11 ? O1 GOL 404 A 1 
HETATM 3 C C2 GOL . . . E 5 -78.642 22.727 20.088 1 75.74 ? C2 GOL 404 A 1 
HETATM 4 O O2 GOL . . . E 5 -78.046 22.256 21.304 1 60.67 ? O2 GOL 404 A 1 
HETATM 5 C C3 GOL . . . E 5 -77.761 22.327 18.919 1 70.99 ? C3 GOL 404 A 1 
HETATM 6 O O3 GOL . . . E 5 -78.331 21.101 18.467 1 77.85 ? O3 GOL 404 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           340 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#