data_4RQ9 # _model_server_result.job_id fpjlVRmk2dxCiXqa7-4oJg _model_server_result.datetime_utc '2025-07-10 08:29:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rq9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4RQ9 # _exptl.entry_id 4RQ9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 15 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RQ9 _cell.length_a 131.813 _cell.length_b 131.813 _cell.length_c 97.218 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RQ9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 32.406 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N ? 5 G N N ? 5 H N N ? 5 I N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 M N N ? 5 N N N ? 5 O N N ? 5 P N N ? 5 Q N N ? 5 R N N ? 5 S N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 218 n n C1 C2 GOL sing 219 n n C1 H11 GOL sing 220 n n C1 H12 GOL sing 221 n n O1 HO1 GOL sing 222 n n C2 O2 GOL sing 223 n n C2 C3 GOL sing 224 n n C2 H2 GOL sing 225 n n O2 HO2 GOL sing 226 n n C3 O3 GOL sing 227 n n C3 H31 GOL sing 228 n n C3 H32 GOL sing 229 n n O3 HO3 GOL sing 230 n n # _atom_sites.entry_id 4RQ9 _atom_sites.fract_transf_matrix[1][1] 0.007587 _atom_sites.fract_transf_matrix[1][2] 0.00438 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010286 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BLA A 1 401 1 BLA BLA . C 3 SRT A 1 402 2 SRT SRT . D 4 EDO A 1 403 3 EDO EDO . E 5 GOL A 1 404 4 GOL GOL . F 5 GOL A 1 405 5 GOL GOL . G 5 GOL A 1 406 6 GOL GOL . H 5 GOL A 1 407 7 GOL GOL . I 5 GOL A 1 408 8 GOL GOL . J 5 GOL A 1 409 9 GOL GOL . K 5 GOL A 1 410 10 GOL GOL . L 5 GOL A 1 411 11 GOL GOL . M 5 GOL A 1 412 12 GOL GOL . N 5 GOL A 1 413 13 GOL GOL . O 5 GOL A 1 414 14 GOL GOL . P 5 GOL A 1 415 15 GOL GOL . Q 5 GOL A 1 416 16 GOL GOL . R 5 GOL A 1 417 17 GOL GOL . S 5 GOL A 1 418 18 GOL GOL . T 6 HOH A 1 501 19 HOH HOH . T 6 HOH A 2 502 20 HOH HOH . T 6 HOH A 3 503 21 HOH HOH . T 6 HOH A 4 504 22 HOH HOH . T 6 HOH A 5 505 23 HOH HOH . T 6 HOH A 6 506 24 HOH HOH . T 6 HOH A 7 507 25 HOH HOH . T 6 HOH A 8 508 26 HOH HOH . T 6 HOH A 9 509 27 HOH HOH . T 6 HOH A 10 510 28 HOH HOH . T 6 HOH A 11 511 29 HOH HOH . T 6 HOH A 12 512 30 HOH HOH . T 6 HOH A 13 513 31 HOH HOH . T 6 HOH A 14 514 32 HOH HOH . T 6 HOH A 15 515 33 HOH HOH . T 6 HOH A 16 516 34 HOH HOH . T 6 HOH A 17 517 35 HOH HOH . T 6 HOH A 18 518 36 HOH HOH . T 6 HOH A 19 519 37 HOH HOH . T 6 HOH A 20 520 38 HOH HOH . T 6 HOH A 21 521 39 HOH HOH . T 6 HOH A 22 522 40 HOH HOH . T 6 HOH A 23 523 41 HOH HOH . T 6 HOH A 24 524 42 HOH HOH . T 6 HOH A 25 525 43 HOH HOH . T 6 HOH A 26 526 44 HOH HOH . T 6 HOH A 27 527 45 HOH HOH . T 6 HOH A 28 528 46 HOH HOH . T 6 HOH A 29 529 47 HOH HOH . T 6 HOH A 30 530 48 HOH HOH . T 6 HOH A 31 531 49 HOH HOH . T 6 HOH A 32 532 50 HOH HOH . T 6 HOH A 33 533 51 HOH HOH . T 6 HOH A 34 534 52 HOH HOH . T 6 HOH A 35 535 53 HOH HOH . T 6 HOH A 36 536 54 HOH HOH . T 6 HOH A 37 537 55 HOH HOH . T 6 HOH A 38 538 56 HOH HOH . T 6 HOH A 39 539 57 HOH HOH . T 6 HOH A 40 540 58 HOH HOH . T 6 HOH A 41 541 59 HOH HOH . T 6 HOH A 42 542 60 HOH HOH . T 6 HOH A 43 543 61 HOH HOH . T 6 HOH A 44 544 62 HOH HOH . T 6 HOH A 45 545 63 HOH HOH . T 6 HOH A 46 546 64 HOH HOH . T 6 HOH A 47 547 65 HOH HOH . T 6 HOH A 48 548 66 HOH HOH . T 6 HOH A 49 549 67 HOH HOH . T 6 HOH A 50 550 68 HOH HOH . T 6 HOH A 51 551 69 HOH HOH . T 6 HOH A 52 552 70 HOH HOH . T 6 HOH A 53 553 71 HOH HOH . T 6 HOH A 54 554 72 HOH HOH . T 6 HOH A 55 555 73 HOH HOH . T 6 HOH A 56 556 74 HOH HOH . T 6 HOH A 57 557 75 HOH HOH . T 6 HOH A 58 558 76 HOH HOH . T 6 HOH A 59 559 77 HOH HOH . T 6 HOH A 60 560 78 HOH HOH . T 6 HOH A 61 561 79 HOH HOH . T 6 HOH A 62 562 80 HOH HOH . T 6 HOH A 63 563 81 HOH HOH . T 6 HOH A 64 564 82 HOH HOH . T 6 HOH A 65 565 83 HOH HOH . T 6 HOH A 66 566 84 HOH HOH . T 6 HOH A 67 567 85 HOH HOH . T 6 HOH A 68 568 86 HOH HOH . T 6 HOH A 69 569 87 HOH HOH . T 6 HOH A 70 570 88 HOH HOH . T 6 HOH A 71 571 89 HOH HOH . T 6 HOH A 72 572 90 HOH HOH . T 6 HOH A 73 573 91 HOH HOH . T 6 HOH A 74 574 92 HOH HOH . T 6 HOH A 75 575 93 HOH HOH . T 6 HOH A 76 576 94 HOH HOH . T 6 HOH A 77 577 95 HOH HOH . T 6 HOH A 78 578 96 HOH HOH . T 6 HOH A 79 579 97 HOH HOH . T 6 HOH A 80 580 98 HOH HOH . T 6 HOH A 81 581 99 HOH HOH . T 6 HOH A 82 582 100 HOH HOH . T 6 HOH A 83 583 101 HOH HOH . T 6 HOH A 84 584 102 HOH HOH . T 6 HOH A 85 585 103 HOH HOH . T 6 HOH A 86 586 104 HOH HOH . T 6 HOH A 87 587 105 HOH HOH . T 6 HOH A 88 588 106 HOH HOH . T 6 HOH A 89 589 107 HOH HOH . T 6 HOH A 90 590 108 HOH HOH . T 6 HOH A 91 591 109 HOH HOH . T 6 HOH A 92 592 110 HOH HOH . T 6 HOH A 93 593 111 HOH HOH . T 6 HOH A 94 594 112 HOH HOH . T 6 HOH A 95 595 113 HOH HOH . T 6 HOH A 96 596 114 HOH HOH . T 6 HOH A 97 597 115 HOH HOH . T 6 HOH A 98 598 116 HOH HOH . T 6 HOH A 99 599 117 HOH HOH . T 6 HOH A 100 600 118 HOH HOH . T 6 HOH A 101 601 119 HOH HOH . T 6 HOH A 102 602 120 HOH HOH . T 6 HOH A 103 603 121 HOH HOH . T 6 HOH A 104 604 122 HOH HOH . T 6 HOH A 105 605 123 HOH HOH . T 6 HOH A 106 606 124 HOH HOH . T 6 HOH A 107 607 125 HOH HOH . T 6 HOH A 108 608 126 HOH HOH . T 6 HOH A 109 609 127 HOH HOH . T 6 HOH A 110 610 128 HOH HOH . T 6 HOH A 111 611 129 HOH HOH . T 6 HOH A 112 612 130 HOH HOH . T 6 HOH A 113 613 131 HOH HOH . T 6 HOH A 114 614 132 HOH HOH . T 6 HOH A 115 615 133 HOH HOH . T 6 HOH A 116 616 134 HOH HOH . T 6 HOH A 117 617 135 HOH HOH . T 6 HOH A 118 618 136 HOH HOH . T 6 HOH A 119 619 137 HOH HOH . T 6 HOH A 120 620 138 HOH HOH . T 6 HOH A 121 621 139 HOH HOH . T 6 HOH A 122 622 140 HOH HOH . T 6 HOH A 123 623 141 HOH HOH . T 6 HOH A 124 624 142 HOH HOH . T 6 HOH A 125 625 143 HOH HOH . T 6 HOH A 126 626 144 HOH HOH . T 6 HOH A 127 627 145 HOH HOH . T 6 HOH A 128 628 146 HOH HOH . T 6 HOH A 129 629 147 HOH HOH . T 6 HOH A 130 630 148 HOH HOH . T 6 HOH A 131 631 149 HOH HOH . T 6 HOH A 132 632 150 HOH HOH . T 6 HOH A 133 633 151 HOH HOH . T 6 HOH A 134 634 152 HOH HOH . T 6 HOH A 135 635 153 HOH HOH . T 6 HOH A 136 636 154 HOH HOH . T 6 HOH A 137 637 155 HOH HOH . T 6 HOH A 138 638 156 HOH HOH . T 6 HOH A 139 639 157 HOH HOH . T 6 HOH A 140 640 158 HOH HOH . T 6 HOH A 141 641 159 HOH HOH . T 6 HOH A 142 642 160 HOH HOH . T 6 HOH A 143 643 161 HOH HOH . T 6 HOH A 144 644 162 HOH HOH . T 6 HOH A 145 645 163 HOH HOH . T 6 HOH A 146 646 164 HOH HOH . T 6 HOH A 147 647 165 HOH HOH . T 6 HOH A 148 648 166 HOH HOH . T 6 HOH A 149 649 167 HOH HOH . T 6 HOH A 150 650 168 HOH HOH . T 6 HOH A 151 651 169 HOH HOH . T 6 HOH A 152 652 170 HOH HOH . T 6 HOH A 153 653 171 HOH HOH . T 6 HOH A 154 654 172 HOH HOH . T 6 HOH A 155 655 173 HOH HOH . T 6 HOH A 156 656 174 HOH HOH . T 6 HOH A 157 657 175 HOH HOH . T 6 HOH A 158 658 176 HOH HOH . T 6 HOH A 159 659 177 HOH HOH . T 6 HOH A 160 660 178 HOH HOH . T 6 HOH A 161 661 179 HOH HOH . T 6 HOH A 162 662 180 HOH HOH . T 6 HOH A 163 663 181 HOH HOH . T 6 HOH A 164 664 182 HOH HOH . T 6 HOH A 165 665 183 HOH HOH . T 6 HOH A 166 666 184 HOH HOH . T 6 HOH A 167 667 185 HOH HOH . T 6 HOH A 168 668 186 HOH HOH . T 6 HOH A 169 669 187 HOH HOH . T 6 HOH A 170 670 188 HOH HOH . T 6 HOH A 171 671 189 HOH HOH . T 6 HOH A 172 672 190 HOH HOH . T 6 HOH A 173 673 191 HOH HOH . T 6 HOH A 174 674 192 HOH HOH . T 6 HOH A 175 675 193 HOH HOH . T 6 HOH A 176 676 194 HOH HOH . T 6 HOH A 177 677 195 HOH HOH . T 6 HOH A 178 678 196 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 -78.861 24.225 20.154 1 77.84 ? C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 5 -79.953 24.495 21.051 1 81.11 ? O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 5 -78.642 22.727 20.088 1 75.74 ? C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 5 -78.046 22.256 21.304 1 60.67 ? O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 5 -77.761 22.327 18.919 1 70.99 ? C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 5 -78.331 21.101 18.467 1 77.85 ? O3 GOL 404 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #