data_4RQB
#
_model_server_result.job_id            eHVwpnYX-urtQjPrjPWr3g 
_model_server_result.datetime_utc      '2024-10-28 02:35:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rqb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":203}' 
#
_entry.id    4RQB 
#
_exptl.entry_id    4RQB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RQB 
_cell.length_a            109.244 
_cell.length_b            109.244 
_cell.length_c            100.79 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RQB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
PISA tetrameric 4 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
? 4 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 3 A GLU 2 1_555 A N MSE 4 A MSE 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C MSE 4 A MSE 3 1_555 A N ASN 5 A ASN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale3 A C VAL 7 A VAL 6 1_555 A N MSE 8 A MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale4 A C MSE 8 A MSE 7 1_555 A N HIS 9 A HIS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? 
covale ? covale5 A C ALA 52 A ALA 51 1_555 A N MSE 53 A MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.307 ? 
covale ? covale6 A C MSE 53 A MSE 52 1_555 A N PHE 54 A PHE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale7 A C PHE 54 A PHE 53 1_555 A N MSE 55 A MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
covale ? covale8 A C MSE 55 A MSE 54 1_555 A N SER 56 A SER 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? 
covale ? covale9 A C PHE 70 A PHE 69 1_555 A N MSE 71 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale10 A C MSE 71 A MSE 70 1_555 A N ASP 72 A ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale11 B C VAL 7 B VAL 6 1_555 B N MSE 8 B MSE 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? 
covale ? covale12 B C MSE 8 B MSE 7 1_555 B N HIS 9 B HIS 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? 
covale ? covale13 B C ALA 52 B ALA 51 1_555 B N MSE 53 B MSE 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale14 B C MSE 53 B MSE 52 1_555 B N PHE 54 B PHE 53 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? 
covale ? covale15 B C PHE 54 B PHE 53 1_555 B N MSE 55 B MSE 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? 
covale ? covale16 B C MSE 55 B MSE 54 1_555 B N SER 56 B SER 55 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale17 B C PHE 70 B PHE 69 1_555 B N MSE 71 B MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale18 B C MSE 71 B MSE 70 1_555 B N ASP 72 B ASP 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     4RQB 
_atom_sites.fract_transf_matrix[1][1]    0.009154 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009154 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009922 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 201 201 SO4 SO4 . 
D 3 UNL A 1 202 202 UNL UNL . 
E 2 SO4 A 1 203 203 SO4 SO4 . 
F 2 SO4 A 1 204 204 SO4 SO4 . 
G 4 GOL A 1 205 205 GOL GOL . 
H 2 SO4 B 1 201 201 SO4 SO4 . 
I 5 CL B 1 202 202 CL CL . 
J 4 GOL B 1 203 203 GOL GOL . 
K 4 GOL B 1 204 204 GOL GOL . 
L 3 UNL B 1 205 1 UNL UNL . 
M 6 HOH A 1 301 301 HOH HOH . 
M 6 HOH A 2 302 302 HOH HOH . 
M 6 HOH A 3 303 303 HOH HOH . 
M 6 HOH A 4 304 304 HOH HOH . 
M 6 HOH A 5 305 305 HOH HOH . 
M 6 HOH A 6 306 306 HOH HOH . 
M 6 HOH A 7 307 307 HOH HOH . 
M 6 HOH A 8 308 309 HOH HOH . 
M 6 HOH A 9 309 310 HOH HOH . 
M 6 HOH A 10 310 311 HOH HOH . 
M 6 HOH A 11 311 312 HOH HOH . 
M 6 HOH A 12 312 313 HOH HOH . 
M 6 HOH A 13 313 314 HOH HOH . 
M 6 HOH A 14 314 315 HOH HOH . 
M 6 HOH A 15 315 316 HOH HOH . 
M 6 HOH A 16 316 317 HOH HOH . 
M 6 HOH A 17 317 318 HOH HOH . 
M 6 HOH A 18 318 319 HOH HOH . 
M 6 HOH A 19 319 320 HOH HOH . 
M 6 HOH A 20 320 321 HOH HOH . 
M 6 HOH A 21 321 322 HOH HOH . 
M 6 HOH A 22 322 323 HOH HOH . 
M 6 HOH A 23 323 324 HOH HOH . 
M 6 HOH A 24 324 325 HOH HOH . 
M 6 HOH A 25 325 326 HOH HOH . 
M 6 HOH A 26 326 327 HOH HOH . 
M 6 HOH A 27 327 328 HOH HOH . 
M 6 HOH A 28 328 329 HOH HOH . 
M 6 HOH A 29 329 330 HOH HOH . 
M 6 HOH A 30 330 331 HOH HOH . 
M 6 HOH A 31 331 332 HOH HOH . 
M 6 HOH A 32 332 333 HOH HOH . 
M 6 HOH A 33 333 334 HOH HOH . 
M 6 HOH A 34 334 335 HOH HOH . 
M 6 HOH A 35 335 336 HOH HOH . 
M 6 HOH A 36 336 337 HOH HOH . 
M 6 HOH A 37 337 338 HOH HOH . 
M 6 HOH A 38 338 340 HOH HOH . 
M 6 HOH A 39 339 1 HOH HOH . 
N 6 HOH B 1 301 301 HOH HOH . 
N 6 HOH B 2 302 302 HOH HOH . 
N 6 HOH B 3 303 303 HOH HOH . 
N 6 HOH B 4 304 304 HOH HOH . 
N 6 HOH B 5 305 305 HOH HOH . 
N 6 HOH B 6 306 306 HOH HOH . 
N 6 HOH B 7 307 307 HOH HOH . 
N 6 HOH B 8 308 308 HOH HOH . 
N 6 HOH B 9 309 309 HOH HOH . 
N 6 HOH B 10 310 310 HOH HOH . 
N 6 HOH B 11 311 311 HOH HOH . 
N 6 HOH B 12 312 312 HOH HOH . 
N 6 HOH B 13 313 313 HOH HOH . 
N 6 HOH B 14 314 314 HOH HOH . 
N 6 HOH B 15 315 315 HOH HOH . 
N 6 HOH B 16 316 316 HOH HOH . 
N 6 HOH B 17 317 317 HOH HOH . 
N 6 HOH B 18 318 318 HOH HOH . 
N 6 HOH B 19 319 319 HOH HOH . 
N 6 HOH B 20 320 320 HOH HOH . 
N 6 HOH B 21 321 321 HOH HOH . 
N 6 HOH B 22 322 322 HOH HOH . 
N 6 HOH B 23 323 323 HOH HOH . 
N 6 HOH B 24 324 324 HOH HOH . 
N 6 HOH B 25 325 325 HOH HOH . 
N 6 HOH B 26 326 326 HOH HOH . 
N 6 HOH B 27 327 327 HOH HOH . 
N 6 HOH B 28 328 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . J 4 20.902 38.495 -14.1 1 46.06 ? C1 GOL 203 B 1 
HETATM 2 O O1 GOL . . . J 4 21.487 37.736 -13.033 1 46.25 ? O1 GOL 203 B 1 
HETATM 3 C C2 GOL . . . J 4 19.76 37.663 -14.612 1 49.45 ? C2 GOL 203 B 1 
HETATM 4 O O2 GOL . . . J 4 19.399 36.765 -13.53 1 52.08 ? O2 GOL 203 B 1 
HETATM 5 C C3 GOL . . . J 4 18.63 38.591 -15.099 1 46.97 ? C3 GOL 203 B 1 
HETATM 6 O O3 GOL . . . J 4 17.437 37.817 -15.41 1 47.18 ? O3 GOL 203 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#