data_4RQS # _model_server_result.job_id '_GaHyADJkZQsmPudTuD3fw' _model_server_result.datetime_utc '2024-11-24 09:05:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":524}' # _entry.id 4RQS # _exptl.entry_id 4RQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 8 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RQS _cell.length_a 171.318 _cell.length_b 171.318 _cell.length_c 151.857 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 A,D,E,F,G,H,I,J,K,L,M 2 1 B,C 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_645 y+1,x-1,-z 0 1 0 1 0 0 0 0 -1 171.318 -171.318 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 5 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 5 6 5 MAN MAN C1 O1 . O2 HO2 . sing 6 ? 5 7 3 MAN BMA C1 O1 . O6 HO6 . sing 7 ? 5 8 7 MAN MAN C1 O1 . O3 HO3 . sing 8 ? 5 9 7 MAN MAN C1 O1 . O6 HO6 . sing 9 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 10 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 11 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n E NAG 1 A 1 NAG A 1 NAG 5 n E NAG 2 A 2 NAG A 2 NAG 5 n E BMA 3 A 3 BMA A 3 BMA 5 n E MAN 4 A 4 MAN A 9 MAN 5 n E MAN 5 A 5 MAN A 10 MAN 5 n E MAN 6 A 6 MAN A 11 MAN 5 n E MAN 7 A 7 MAN A 4 MAN 5 n E MAN 8 A 8 MAN A 7 MAN 5 n E MAN 9 A 9 MAN A 5 MAN 6 n F NAG 1 E 1 NAG H 1 NAG 6 n F NAG 2 E 2 NAG H 2 NAG 7 n G NAG 1 F 1 NAG I 1 NAG 7 n G NAG 2 F 2 NAG I 2 NAG 7 n G BMA 3 F 3 BMA I 3 BMA 6 n H NAG 1 H 1 NAG J 1 NAG 6 n H NAG 2 H 2 NAG J 2 NAG 6 n I NAG 1 I 1 NAG K 1 NAG 6 n I NAG 2 I 2 NAG K 2 NAG 6 n J NAG 1 J 1 NAG M 1 NAG 6 n J NAG 2 J 2 NAG M 2 NAG 7 n K NAG 1 K 1 NAG L 1 NAG 7 n K NAG 2 K 2 NAG L 2 NAG 7 n K BMA 3 K 3 BMA L 3 BMA 7 n L NAG 1 L 1 NAG F 1 NAG 7 n L NAG 2 L 2 NAG F 2 NAG 7 n L BMA 3 L 3 BMA F 3 BMA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 16 B CYS 16 1_555 A SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 A SG CYS 130 B CYS 130 1_555 A SG CYS 159 B CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 23 C CYS 23 1_555 B SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 B SG CYS 136 C CYS 134 1_555 B SG CYS 196 C CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 22 D CYS 22 1_555 C SG CYS 96 D CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 155 D CYS 140 1_555 C SG CYS 211 D CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf7 D SG CYS 41 G CYS 119 1_555 D SG CYS 63 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf8 D SG CYS 48 G CYS 126 1_555 D SG CYS 54 G CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf9 D SG CYS 76 G CYS 218 1_555 D SG CYS 105 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 D SG CYS 154 G CYS 296 1_555 D SG CYS 160 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 D SG CYS 207 G CYS 378 1_555 D SG CYS 266 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 D SG CYS 214 G CYS 385 1_555 D SG CYS 239 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 D ND2 ASN 92 G ASN 234 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale2 D ND2 ASN 99 G ASN 241 1_555 G C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale3 D ND2 ASN 120 G ASN 262 1_555 E C1 NAG . A NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale4 D ND2 ASN 134 G ASN 276 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 D ND2 ASN 147 G ASN 289 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale6 D ND2 ASN 153 G ASN 295 1_555 M C1 NAG . G NAG 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale7 D ND2 ASN 161 G ASN 332 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale8 D ND2 ASN 215 G ASN 386 1_555 F C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale9 D ND2 ASN 269 G ASN 448 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 E O4 NAG . A NAG 1 1_555 E C1 NAG . A NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale11 E O4 NAG . A NAG 2 1_555 E C1 BMA . A BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale12 E O3 BMA . A BMA 3 1_555 E C1 MAN . A MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale13 E O6 BMA . A BMA 3 1_555 E C1 MAN . A MAN 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale14 E O2 MAN . A MAN 4 1_555 E C1 MAN . A MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale15 E O2 MAN . A MAN 5 1_555 E C1 MAN . A MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale16 E O3 MAN . A MAN 7 1_555 E C1 MAN . A MAN 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? covale ? covale17 E O6 MAN . A MAN 7 1_555 E C1 MAN . A MAN 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? covale ? covale18 F O4 NAG . E NAG 1 1_555 F C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale19 G O4 NAG . F NAG 1 1_555 G C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale20 G O4 NAG . F NAG 2 1_555 G C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale21 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale22 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale23 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale24 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale25 K O4 NAG . K NAG 2 1_555 K C1 BMA . K BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale26 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale27 L O4 NAG . L NAG 2 1_555 L C1 BMA . L BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4RQS _atom_sites.fract_transf_matrix[1][1] 0.005837 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005837 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006585 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id M _pdbx_nonpoly_scheme.entity_id 8 _pdbx_nonpoly_scheme.mon_id NAG _pdbx_nonpoly_scheme.pdb_strand_id G _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 524 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id NAG _pdbx_nonpoly_scheme.auth_mon_id NAG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . M 8 147.28 -9.787 21.736 1 176.5 ? C1 NAG 524 G 1 HETATM 2 C C2 NAG . . . M 8 146.194 -9.545 22.78 1 180.97 ? C2 NAG 524 G 1 HETATM 3 C C3 NAG . . . M 8 144.918 -9.053 22.117 1 184.18 ? C3 NAG 524 G 1 HETATM 4 C C4 NAG . . . M 8 145.213 -7.848 21.235 1 197.56 ? C4 NAG 524 G 1 HETATM 5 C C5 NAG . . . M 8 146.382 -8.119 20.291 1 184.45 ? C5 NAG 524 G 1 HETATM 6 C C6 NAG . . . M 8 146.773 -6.846 19.546 1 196.7 ? C6 NAG 524 G 1 HETATM 7 C C7 NAG . . . M 8 146.165 -10.804 24.848 1 172.08 ? C7 NAG 524 G 1 HETATM 8 C C8 NAG . . . M 8 145.611 -11.989 25.585 1 139.69 ? C8 NAG 524 G 1 HETATM 9 N N2 NAG . . . M 8 145.934 -10.753 23.539 1 167.72 ? N2 NAG 524 G 1 HETATM 10 O O3 NAG . . . M 8 143.977 -8.7 23.106 1 172.17 ? O3 NAG 524 G 1 HETATM 11 O O4 NAG . . . M 8 144.062 -7.536 20.482 1 202.7 ? O4 NAG 524 G 1 HETATM 12 O O5 NAG . . . M 8 147.511 -8.612 20.985 1 178.33 ? O5 NAG 524 G 1 HETATM 13 O O6 NAG . . . M 8 147.032 -5.811 20.469 1 209.31 ? O6 NAG 524 G 1 HETATM 14 O O7 NAG . . . M 8 146.794 -9.935 25.449 1 209.66 ? O7 NAG 524 G 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #