data_4RR4 # _model_server_result.job_id dfzj0rpnKZ33FCt9olq6hQ _model_server_result.datetime_utc '2024-10-19 15:40:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rr4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4RR4 # _exptl.entry_id 4RR4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RR4 _cell.length_a 91.38 _cell.length_b 91.38 _cell.length_c 122.441 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RR4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 126 n n N1 C10 FMN doub 127 n n C2 O2 FMN doub 128 n n C2 N3 FMN sing 129 n n N3 C4 FMN sing 130 n n N3 HN3 FMN sing 131 n n C4 O4 FMN doub 132 n n C4 C4A FMN sing 133 n n C4A N5 FMN doub 134 n n C4A C10 FMN sing 135 n n N5 C5A FMN sing 136 n n C5A C6 FMN doub 137 n y C5A C9A FMN sing 138 n y C6 C7 FMN sing 139 n y C6 H6 FMN sing 140 n n C7 C7M FMN sing 141 n n C7 C8 FMN doub 142 n y C7M HM71 FMN sing 143 n n C7M HM72 FMN sing 144 n n C7M HM73 FMN sing 145 n n C8 C8M FMN sing 146 n n C8 C9 FMN sing 147 n y C8M HM81 FMN sing 148 n n C8M HM82 FMN sing 149 n n C8M HM83 FMN sing 150 n n C9 C9A FMN doub 151 n y C9 H9 FMN sing 152 n n C9A N10 FMN sing 153 n n N10 C10 FMN sing 154 n n N10 C1' FMN sing 155 n n C1' C2' FMN sing 156 n n C1' "H1'1" FMN sing 157 n n C1' "H1'2" FMN sing 158 n n C2' O2' FMN sing 159 n n C2' C3' FMN sing 160 n n C2' H2' FMN sing 161 n n O2' HO2' FMN sing 162 n n C3' O3' FMN sing 163 n n C3' C4' FMN sing 164 n n C3' H3' FMN sing 165 n n O3' HO3' FMN sing 166 n n C4' O4' FMN sing 167 n n C4' C5' FMN sing 168 n n C4' H4' FMN sing 169 n n O4' HO4' FMN sing 170 n n C5' O5' FMN sing 171 n n C5' "H5'1" FMN sing 172 n n C5' "H5'2" FMN sing 173 n n O5' P FMN sing 174 n n P O1P FMN doub 175 n n P O2P FMN sing 176 n n P O3P FMN sing 177 n n O2P HOP2 FMN sing 178 n n O3P HOP3 FMN sing 179 n n # _atom_sites.entry_id 4RR4 _atom_sites.fract_transf_matrix[1][1] 0.010943 _atom_sites.fract_transf_matrix[1][2] 0.006318 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012636 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008167 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 398 FMN FMN . C 3 ORO A 1 402 399 ORO ORO . D 4 3V1 A 1 403 1 3V1 367 . E 5 SO4 A 1 404 1 SO4 SO4 . F 5 SO4 A 1 405 2 SO4 SO4 . G 6 HOH A 1 501 1 HOH HOH . G 6 HOH A 2 502 2 HOH HOH . G 6 HOH A 3 503 3 HOH HOH . G 6 HOH A 4 504 4 HOH HOH . G 6 HOH A 5 505 5 HOH HOH . G 6 HOH A 6 506 6 HOH HOH . G 6 HOH A 7 507 7 HOH HOH . G 6 HOH A 8 508 8 HOH HOH . G 6 HOH A 9 509 9 HOH HOH . G 6 HOH A 10 510 10 HOH HOH . G 6 HOH A 11 511 11 HOH HOH . G 6 HOH A 12 512 12 HOH HOH . G 6 HOH A 13 513 13 HOH HOH . G 6 HOH A 14 514 15 HOH HOH . G 6 HOH A 15 515 16 HOH HOH . G 6 HOH A 16 516 18 HOH HOH . G 6 HOH A 17 517 19 HOH HOH . G 6 HOH A 18 518 20 HOH HOH . G 6 HOH A 19 519 24 HOH HOH . G 6 HOH A 20 520 25 HOH HOH . G 6 HOH A 21 521 27 HOH HOH . G 6 HOH A 22 522 43 HOH HOH . G 6 HOH A 23 523 44 HOH HOH . G 6 HOH A 24 524 45 HOH HOH . G 6 HOH A 25 525 46 HOH HOH . G 6 HOH A 26 526 47 HOH HOH . G 6 HOH A 27 527 48 HOH HOH . G 6 HOH A 28 528 49 HOH HOH . G 6 HOH A 29 529 50 HOH HOH . G 6 HOH A 30 530 51 HOH HOH . G 6 HOH A 31 531 52 HOH HOH . G 6 HOH A 32 532 53 HOH HOH . G 6 HOH A 33 533 54 HOH HOH . G 6 HOH A 34 534 55 HOH HOH . G 6 HOH A 35 535 56 HOH HOH . G 6 HOH A 36 536 57 HOH HOH . G 6 HOH A 37 537 58 HOH HOH . G 6 HOH A 38 538 59 HOH HOH . G 6 HOH A 39 539 60 HOH HOH . G 6 HOH A 40 540 61 HOH HOH . G 6 HOH A 41 541 62 HOH HOH . G 6 HOH A 42 542 63 HOH HOH . G 6 HOH A 43 543 64 HOH HOH . G 6 HOH A 44 544 65 HOH HOH . G 6 HOH A 45 545 66 HOH HOH . G 6 HOH A 46 546 67 HOH HOH . G 6 HOH A 47 547 68 HOH HOH . G 6 HOH A 48 548 69 HOH HOH . G 6 HOH A 49 549 70 HOH HOH . G 6 HOH A 50 550 71 HOH HOH . G 6 HOH A 51 551 72 HOH HOH . G 6 HOH A 52 552 73 HOH HOH . G 6 HOH A 53 553 74 HOH HOH . G 6 HOH A 54 554 75 HOH HOH . G 6 HOH A 55 555 76 HOH HOH . G 6 HOH A 56 556 77 HOH HOH . G 6 HOH A 57 557 78 HOH HOH . G 6 HOH A 58 558 79 HOH HOH . G 6 HOH A 59 559 80 HOH HOH . G 6 HOH A 60 560 81 HOH HOH . G 6 HOH A 61 561 82 HOH HOH . G 6 HOH A 62 562 83 HOH HOH . G 6 HOH A 63 563 84 HOH HOH . G 6 HOH A 64 564 85 HOH HOH . G 6 HOH A 65 565 86 HOH HOH . G 6 HOH A 66 566 87 HOH HOH . G 6 HOH A 67 567 88 HOH HOH . G 6 HOH A 68 568 89 HOH HOH . G 6 HOH A 69 569 90 HOH HOH . G 6 HOH A 70 570 91 HOH HOH . G 6 HOH A 71 571 93 HOH HOH . G 6 HOH A 72 572 95 HOH HOH . G 6 HOH A 73 573 96 HOH HOH . G 6 HOH A 74 574 98 HOH HOH . G 6 HOH A 75 575 99 HOH HOH . G 6 HOH A 76 576 100 HOH HOH . G 6 HOH A 77 577 101 HOH HOH . G 6 HOH A 78 578 102 HOH HOH . G 6 HOH A 79 579 103 HOH HOH . G 6 HOH A 80 580 104 HOH HOH . G 6 HOH A 81 581 105 HOH HOH . G 6 HOH A 82 582 106 HOH HOH . G 6 HOH A 83 583 107 HOH HOH . G 6 HOH A 84 584 108 HOH HOH . G 6 HOH A 85 585 109 HOH HOH . G 6 HOH A 86 586 110 HOH HOH . G 6 HOH A 87 587 111 HOH HOH . G 6 HOH A 88 588 112 HOH HOH . G 6 HOH A 89 589 113 HOH HOH . G 6 HOH A 90 590 114 HOH HOH . G 6 HOH A 91 591 116 HOH HOH . G 6 HOH A 92 592 119 HOH HOH . G 6 HOH A 93 593 120 HOH HOH . G 6 HOH A 94 594 121 HOH HOH . G 6 HOH A 95 595 122 HOH HOH . G 6 HOH A 96 596 123 HOH HOH . G 6 HOH A 97 597 126 HOH HOH . G 6 HOH A 98 598 128 HOH HOH . G 6 HOH A 99 599 130 HOH HOH . G 6 HOH A 100 600 131 HOH HOH . G 6 HOH A 101 601 133 HOH HOH . G 6 HOH A 102 602 135 HOH HOH . G 6 HOH A 103 603 136 HOH HOH . G 6 HOH A 104 604 137 HOH HOH . G 6 HOH A 105 605 139 HOH HOH . G 6 HOH A 106 606 142 HOH HOH . G 6 HOH A 107 607 143 HOH HOH . G 6 HOH A 108 608 144 HOH HOH . G 6 HOH A 109 609 147 HOH HOH . G 6 HOH A 110 610 157 HOH HOH . G 6 HOH A 111 611 168 HOH HOH . G 6 HOH A 112 612 169 HOH HOH . G 6 HOH A 113 613 170 HOH HOH . G 6 HOH A 114 614 171 HOH HOH . G 6 HOH A 115 615 172 HOH HOH . G 6 HOH A 116 616 173 HOH HOH . G 6 HOH A 117 617 174 HOH HOH . G 6 HOH A 118 618 175 HOH HOH . G 6 HOH A 119 619 176 HOH HOH . G 6 HOH A 120 620 177 HOH HOH . G 6 HOH A 121 621 178 HOH HOH . G 6 HOH A 122 622 179 HOH HOH . G 6 HOH A 123 623 180 HOH HOH . G 6 HOH A 124 624 181 HOH HOH . G 6 HOH A 125 625 182 HOH HOH . G 6 HOH A 126 626 183 HOH HOH . G 6 HOH A 127 627 184 HOH HOH . G 6 HOH A 128 628 185 HOH HOH . G 6 HOH A 129 629 186 HOH HOH . G 6 HOH A 130 630 187 HOH HOH . G 6 HOH A 131 631 188 HOH HOH . G 6 HOH A 132 632 189 HOH HOH . G 6 HOH A 133 633 190 HOH HOH . G 6 HOH A 134 634 192 HOH HOH . G 6 HOH A 135 635 193 HOH HOH . G 6 HOH A 136 636 194 HOH HOH . G 6 HOH A 137 637 195 HOH HOH . G 6 HOH A 138 638 196 HOH HOH . G 6 HOH A 139 639 197 HOH HOH . G 6 HOH A 140 640 198 HOH HOH . G 6 HOH A 141 641 199 HOH HOH . G 6 HOH A 142 642 200 HOH HOH . G 6 HOH A 143 643 201 HOH HOH . G 6 HOH A 144 644 202 HOH HOH . G 6 HOH A 145 645 203 HOH HOH . G 6 HOH A 146 646 204 HOH HOH . G 6 HOH A 147 647 205 HOH HOH . G 6 HOH A 148 648 206 HOH HOH . G 6 HOH A 149 649 207 HOH HOH . G 6 HOH A 150 650 208 HOH HOH . G 6 HOH A 151 651 209 HOH HOH . G 6 HOH A 152 652 210 HOH HOH . G 6 HOH A 153 653 211 HOH HOH . G 6 HOH A 154 654 212 HOH HOH . G 6 HOH A 155 655 213 HOH HOH . G 6 HOH A 156 656 214 HOH HOH . G 6 HOH A 157 657 215 HOH HOH . G 6 HOH A 158 658 216 HOH HOH . G 6 HOH A 159 659 218 HOH HOH . G 6 HOH A 160 660 219 HOH HOH . G 6 HOH A 161 661 220 HOH HOH . G 6 HOH A 162 662 221 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 3.44 42.408 8.543 1 6.86 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 3.08 43.108 9.641 1 7.03 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 3.715 42.948 10.715 1 6.78 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 2.018 43.936 9.591 1 7.05 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 1.304 44.101 8.474 1 6.87 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 0.318 44.842 8.475 1 7.05 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 1.683 43.4 7.232 1 6.73 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 1.02 43.546 6.076 1 6.58 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 1.364 42.856 4.962 1 6.52 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 0.642 43.007 3.79 1 6.3 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 0.988 42.281 2.658 1 6.39 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 0.189 42.416 1.366 1 6.13 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 2.148 41.364 2.704 1 6.3 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 2.535 40.584 1.479 1 6.36 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 2.869 41.218 3.855 1 6.32 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 2.523 41.918 4.994 1 6.56 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 3.251 41.793 6.213 1 6.66 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 2.822 42.518 7.347 1 6.68 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 4.405 40.905 6.367 1 6.29 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 3.963 39.463 6.553 1 6.14 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 3.324 39.385 7.835 1 5.98 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 5.228 38.609 6.526 1 6.13 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 6.044 39.119 7.585 1 6.04 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 6.005 38.781 5.193 1 6.22 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 5.085 38.93 4.082 1 5.92 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 6.917 37.59 4.956 1 6.3 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 6.144 36.4 4.872 1 6.57 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 5.774 35.762 3.429 1 6.98 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 7.054 35.756 2.579 1 6.97 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 4.719 36.69 2.831 1 7.13 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 5.263 34.423 3.801 1 6.88 -1 O3P FMN 401 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #