data_4RR6 # _model_server_result.job_id OFHiGBFmjvR0Kd7kFKV9Nw _model_server_result.datetime_utc '2024-10-19 17:39:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rr6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4RR6 # _exptl.entry_id 4RR6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "SERINE-3'-AMINOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RR6 _cell.length_a 46.956 _cell.length_b 46.956 _cell.length_c 112.639 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RR6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C13 H19 N7 O5' _chem_comp.formula_weight 353.334 _chem_comp.id A3S _chem_comp.mon_nstd_flag . _chem_comp.name "SERINE-3'-AMINOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "N'-L-SERYL-3'-AMINO-(3'-DEOXY)-ADENOSINE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5' C5' A3S sing 1 n n O5' H5' A3S sing 2 n n C5' C4' A3S sing 3 n n C5' "H5'1" A3S sing 4 n n C5' "H5'2" A3S sing 5 n n C4' O4' A3S sing 6 n n C4' C3' A3S sing 7 n n C4' H4' A3S sing 8 n n O4' C1' A3S sing 9 n n C1' N9 A3S sing 10 n n C1' C2' A3S sing 11 n n C1' H1' A3S sing 12 n n N9 C4 A3S sing 13 n y N9 C8 A3S sing 14 n y C4 N3 A3S sing 15 n y C4 C5 A3S doub 16 n y N3 C2 A3S doub 17 n y C2 N1 A3S sing 18 n y C2 H2 A3S sing 19 n n N1 C6 A3S doub 20 n y C6 N6 A3S sing 21 n n C6 C5 A3S sing 22 n y N6 HN61 A3S sing 23 n n N6 HN62 A3S sing 24 n n C5 N7 A3S sing 25 n y N7 C8 A3S doub 26 n y C8 H8 A3S sing 27 n n C2' O2' A3S sing 28 n n C2' C3' A3S sing 29 n n C2' H2' A3S sing 30 n n O2' H1 A3S sing 31 n n C3' N8 A3S sing 32 n n C3' H3' A3S sing 33 n n N8 C A3S sing 34 n n N8 HN8 A3S sing 35 n n N CA A3S sing 36 n n N HN1 A3S sing 37 n n N HN2 A3S sing 38 n n CA CB A3S sing 39 n n CA C A3S sing 40 n n CA HA A3S sing 41 n n CB OG A3S sing 42 n n CB HB1 A3S sing 43 n n CB HB2 A3S sing 44 n n OG HOG A3S sing 45 n n C O A3S doub 46 n n # _atom_sites.entry_id 4RR6 _atom_sites.fract_transf_matrix[1][1] 0.021297 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021297 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008878 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3S A 1 500 500 A3S A3S . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 4 HOH HOH . C 3 HOH A 5 605 5 HOH HOH . C 3 HOH A 6 606 6 HOH HOH . C 3 HOH A 7 607 7 HOH HOH . C 3 HOH A 8 608 8 HOH HOH . C 3 HOH A 9 609 9 HOH HOH . C 3 HOH A 10 610 10 HOH HOH . C 3 HOH A 11 611 11 HOH HOH . C 3 HOH A 12 612 12 HOH HOH . C 3 HOH A 13 613 13 HOH HOH . C 3 HOH A 14 614 14 HOH HOH . C 3 HOH A 15 615 15 HOH HOH . C 3 HOH A 16 616 16 HOH HOH . C 3 HOH A 17 617 17 HOH HOH . C 3 HOH A 18 618 18 HOH HOH . C 3 HOH A 19 619 19 HOH HOH . C 3 HOH A 20 620 20 HOH HOH . C 3 HOH A 21 621 21 HOH HOH . C 3 HOH A 22 622 22 HOH HOH . C 3 HOH A 23 623 23 HOH HOH . C 3 HOH A 24 624 24 HOH HOH . C 3 HOH A 25 625 25 HOH HOH . C 3 HOH A 26 626 26 HOH HOH . C 3 HOH A 27 627 27 HOH HOH . C 3 HOH A 28 628 28 HOH HOH . C 3 HOH A 29 629 29 HOH HOH . C 3 HOH A 30 630 30 HOH HOH . C 3 HOH A 31 631 31 HOH HOH . C 3 HOH A 32 632 32 HOH HOH . C 3 HOH A 33 633 33 HOH HOH . C 3 HOH A 34 634 34 HOH HOH . C 3 HOH A 35 635 35 HOH HOH . C 3 HOH A 36 636 36 HOH HOH . C 3 HOH A 37 637 37 HOH HOH . C 3 HOH A 38 638 38 HOH HOH . C 3 HOH A 39 639 39 HOH HOH . C 3 HOH A 40 640 40 HOH HOH . C 3 HOH A 41 641 41 HOH HOH . C 3 HOH A 42 642 42 HOH HOH . C 3 HOH A 43 643 43 HOH HOH . C 3 HOH A 44 644 44 HOH HOH . C 3 HOH A 45 645 45 HOH HOH . C 3 HOH A 46 646 46 HOH HOH . C 3 HOH A 47 647 47 HOH HOH . C 3 HOH A 48 648 48 HOH HOH . C 3 HOH A 49 649 49 HOH HOH . C 3 HOH A 50 650 50 HOH HOH . C 3 HOH A 51 651 51 HOH HOH . C 3 HOH A 52 652 52 HOH HOH . C 3 HOH A 53 653 53 HOH HOH . C 3 HOH A 54 654 54 HOH HOH . C 3 HOH A 55 655 55 HOH HOH . C 3 HOH A 56 656 56 HOH HOH . C 3 HOH A 57 657 57 HOH HOH . C 3 HOH A 58 658 58 HOH HOH . C 3 HOH A 59 659 59 HOH HOH . C 3 HOH A 60 660 60 HOH HOH . C 3 HOH A 61 661 61 HOH HOH . C 3 HOH A 62 662 62 HOH HOH . C 3 HOH A 63 663 63 HOH HOH . C 3 HOH A 64 664 64 HOH HOH . C 3 HOH A 65 665 65 HOH HOH . C 3 HOH A 66 666 66 HOH HOH . C 3 HOH A 67 667 67 HOH HOH . C 3 HOH A 68 668 68 HOH HOH . C 3 HOH A 69 669 69 HOH HOH . C 3 HOH A 70 670 70 HOH HOH . C 3 HOH A 71 671 71 HOH HOH . C 3 HOH A 72 672 72 HOH HOH . C 3 HOH A 73 673 73 HOH HOH . C 3 HOH A 74 674 74 HOH HOH . C 3 HOH A 75 675 75 HOH HOH . C 3 HOH A 76 676 76 HOH HOH . C 3 HOH A 77 677 77 HOH HOH . C 3 HOH A 78 678 78 HOH HOH . C 3 HOH A 79 679 79 HOH HOH . C 3 HOH A 80 680 80 HOH HOH . C 3 HOH A 81 681 81 HOH HOH . C 3 HOH A 82 682 82 HOH HOH . C 3 HOH A 83 683 83 HOH HOH . C 3 HOH A 84 684 84 HOH HOH . C 3 HOH A 85 685 85 HOH HOH . C 3 HOH A 86 686 86 HOH HOH . C 3 HOH A 87 687 87 HOH HOH . C 3 HOH A 88 688 88 HOH HOH . C 3 HOH A 89 689 89 HOH HOH . C 3 HOH A 90 690 90 HOH HOH . C 3 HOH A 91 691 91 HOH HOH . C 3 HOH A 92 692 92 HOH HOH . C 3 HOH A 93 693 93 HOH HOH . C 3 HOH A 94 694 94 HOH HOH . C 3 HOH A 95 695 95 HOH HOH . C 3 HOH A 96 696 96 HOH HOH . C 3 HOH A 97 697 97 HOH HOH . C 3 HOH A 98 698 98 HOH HOH . C 3 HOH A 99 699 99 HOH HOH . C 3 HOH A 100 700 100 HOH HOH . C 3 HOH A 101 701 101 HOH HOH . C 3 HOH A 102 702 102 HOH HOH . C 3 HOH A 103 703 103 HOH HOH . C 3 HOH A 104 704 104 HOH HOH . C 3 HOH A 105 705 105 HOH HOH . C 3 HOH A 106 706 106 HOH HOH . C 3 HOH A 107 707 107 HOH HOH . C 3 HOH A 108 708 108 HOH HOH . C 3 HOH A 109 709 109 HOH HOH . C 3 HOH A 110 710 110 HOH HOH . C 3 HOH A 111 711 111 HOH HOH . C 3 HOH A 112 712 112 HOH HOH . C 3 HOH A 113 713 113 HOH HOH . C 3 HOH A 114 714 114 HOH HOH . C 3 HOH A 115 715 115 HOH HOH . C 3 HOH A 116 716 116 HOH HOH . C 3 HOH A 117 717 117 HOH HOH . C 3 HOH A 118 718 118 HOH HOH . C 3 HOH A 119 719 119 HOH HOH . C 3 HOH A 120 720 120 HOH HOH . C 3 HOH A 121 721 121 HOH HOH . C 3 HOH A 122 722 122 HOH HOH . C 3 HOH A 123 723 123 HOH HOH . C 3 HOH A 124 724 124 HOH HOH . C 3 HOH A 125 725 125 HOH HOH . C 3 HOH A 126 726 126 HOH HOH . C 3 HOH A 127 727 127 HOH HOH . C 3 HOH A 128 728 128 HOH HOH . C 3 HOH A 129 729 129 HOH HOH . C 3 HOH A 130 730 130 HOH HOH . C 3 HOH A 131 731 131 HOH HOH . C 3 HOH A 132 732 132 HOH HOH . C 3 HOH A 133 733 133 HOH HOH . C 3 HOH A 134 734 134 HOH HOH . C 3 HOH A 135 735 135 HOH HOH . C 3 HOH A 136 736 136 HOH HOH . C 3 HOH A 137 737 137 HOH HOH . C 3 HOH A 138 738 138 HOH HOH . C 3 HOH A 139 739 139 HOH HOH . C 3 HOH A 140 740 140 HOH HOH . C 3 HOH A 141 741 141 HOH HOH . C 3 HOH A 142 742 142 HOH HOH . C 3 HOH A 143 743 143 HOH HOH . C 3 HOH A 144 744 144 HOH HOH . C 3 HOH A 145 745 145 HOH HOH . C 3 HOH A 146 746 146 HOH HOH . C 3 HOH A 147 747 147 HOH HOH . C 3 HOH A 148 748 148 HOH HOH . C 3 HOH A 149 749 149 HOH HOH . C 3 HOH A 150 750 150 HOH HOH . C 3 HOH A 151 751 151 HOH HOH . C 3 HOH A 152 752 152 HOH HOH . C 3 HOH A 153 753 195 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5' A3S . . . B 2 15.309 -2.473 -5.832 1 23.59 ? O5' A3S 500 A 1 HETATM 2 C C5' A3S . . . B 2 14.951 -3.842 -6.055 1 22.1 ? C5' A3S 500 A 1 HETATM 3 C C4' A3S . . . B 2 14.77 -4.529 -4.739 1 20.87 ? C4' A3S 500 A 1 HETATM 4 O O4' A3S . . . B 2 16.029 -4.46 -4.016 1 22.14 ? O4' A3S 500 A 1 HETATM 5 C C1' A3S . . . B 2 15.731 -3.927 -2.691 1 19.29 ? C1' A3S 500 A 1 HETATM 6 N N9 A3S . . . B 2 16.516 -2.63 -2.522 1 19.82 ? N9 A3S 500 A 1 HETATM 7 C C4 A3S . . . B 2 16.374 -1.793 -1.492 1 20.7 ? C4 A3S 500 A 1 HETATM 8 N N3 A3S . . . B 2 15.547 -1.814 -0.437 1 20.75 ? N3 A3S 500 A 1 HETATM 9 C C2 A3S . . . B 2 15.634 -0.838 0.474 1 20.28 ? C2 A3S 500 A 1 HETATM 10 N N1 A3S . . . B 2 16.537 0.12 0.35 1 19.99 ? N1 A3S 500 A 1 HETATM 11 C C6 A3S . . . B 2 17.392 0.208 -0.69 1 19.93 ? C6 A3S 500 A 1 HETATM 12 N N6 A3S . . . B 2 18.28 1.209 -0.787 1 21.54 ? N6 A3S 500 A 1 HETATM 13 C C5 A3S . . . B 2 17.315 -0.793 -1.649 1 21.16 ? C5 A3S 500 A 1 HETATM 14 N N7 A3S . . . B 2 17.969 -1.029 -2.794 1 20.99 ? N7 A3S 500 A 1 HETATM 15 C C8 A3S . . . B 2 17.502 -2.169 -3.327 1 20.4 ? C8 A3S 500 A 1 HETATM 16 C C2' A3S . . . B 2 14.221 -4 -2.501 1 20.08 ? C2' A3S 500 A 1 HETATM 17 O O2' A3S . . . B 2 13.833 -5.299 -2.072 1 22.66 ? O2' A3S 500 A 1 HETATM 18 C C3' A3S . . . B 2 13.759 -3.732 -3.927 1 21.34 ? C3' A3S 500 A 1 HETATM 19 N N8 A3S . . . B 2 12.43 -4.255 -4.093 1 21.78 ? N8 A3S 500 A 1 HETATM 20 N N A3S . . . B 2 9.094 -3.96 -2.95 1 23.21 ? N A3S 500 A 1 HETATM 21 C CA A3S . . . B 2 10.042 -4.195 -4.081 1 23.37 ? CA A3S 500 A 1 HETATM 22 C CB A3S . . . B 2 9.397 -3.748 -5.418 1 24.27 ? CB A3S 500 A 1 HETATM 23 O OG A3S . . . B 2 8.333 -4.681 -5.763 1 26.19 ? OG A3S 500 A 1 HETATM 24 C C A3S . . . B 2 11.376 -3.509 -3.896 1 22.56 ? C A3S 500 A 1 HETATM 25 O O A3S . . . B 2 11.466 -2.184 -3.612 1 22.85 ? O A3S 500 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 25 #