data_4RRC # _model_server_result.job_id 13KhKAlv4a-bL-g-kKyM1g _model_server_result.datetime_utc '2024-12-21 17:14:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rrc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 4RRC # _exptl.entry_id 4RRC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.36 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-deoxy-3'-(L-threonylamino)adenosine" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RRC _cell.length_a 48.808 _cell.length_b 48.808 _cell.length_c 114.709 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RRC _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 57.3545 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H21 N7 O5' _chem_comp.formula_weight 367.36 _chem_comp.id A3T _chem_comp.mon_nstd_flag . _chem_comp.name "3'-deoxy-3'-(L-threonylamino)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O A3T doub 1 n n C N8 A3T sing 2 n n C CA A3T sing 3 n n N CA A3T sing 4 n n N1 C2 A3T doub 5 n y N1 C6 A3T sing 6 n y C2 N3 A3T sing 7 n y N3 C4 A3T doub 8 n y C4 C5 A3T sing 9 n y C4 N9 A3T sing 10 n y C5 C6 A3T doub 11 n y C5 N7 A3T sing 12 n y C6 N6 A3T sing 13 n n N7 C8 A3T doub 14 n y C8 N9 A3T sing 15 n y N8 C3' A3T sing 16 n n N9 C1' A3T sing 17 n n CA CB A3T sing 18 n n CB OG A3T sing 19 n n CB CG2 A3T sing 20 n n C1' C2' A3T sing 21 n n C1' O4' A3T sing 22 n n C2' O2' A3T sing 23 n n C2' C3' A3T sing 24 n n C3' C4' A3T sing 25 n n C4' O4' A3T sing 26 n n C4' C5' A3T sing 27 n n C5' O5' A3T sing 28 n n N HN A3T sing 29 n n N HNA A3T sing 30 n n C2 H2 A3T sing 31 n n N6 HN6 A3T sing 32 n n N6 HN6A A3T sing 33 n n C8 H8 A3T sing 34 n n N8 HN8 A3T sing 35 n n CA HA A3T sing 36 n n CB HB A3T sing 37 n n OG HOG A3T sing 38 n n C1' H1' A3T sing 39 n n C2' H2' A3T sing 40 n n O2' HO2' A3T sing 41 n n C3' H3' A3T sing 42 n n C4' H4' A3T sing 43 n n C5' H5' A3T sing 44 n n C5' "H5'A" A3T sing 45 n n O5' HO5' A3T sing 46 n n CG2 HG2 A3T sing 47 n n CG2 HG2A A3T sing 48 n n CG2 HG2B A3T sing 49 n n # _atom_sites.entry_id 4RRC _atom_sites.fract_transf_matrix[1][1] 0.020488 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008718 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3T A 1 500 500 A3T A3T . C 3 HOH A 1 601 1 HOH HOH . C 3 HOH A 2 602 2 HOH HOH . C 3 HOH A 3 603 3 HOH HOH . C 3 HOH A 4 604 5 HOH HOH . C 3 HOH A 5 605 6 HOH HOH . C 3 HOH A 6 606 7 HOH HOH . C 3 HOH A 7 607 8 HOH HOH . C 3 HOH A 8 608 9 HOH HOH . C 3 HOH A 9 609 10 HOH HOH . C 3 HOH A 10 610 11 HOH HOH . C 3 HOH A 11 611 12 HOH HOH . C 3 HOH A 12 612 13 HOH HOH . C 3 HOH A 13 613 14 HOH HOH . C 3 HOH A 14 614 15 HOH HOH . C 3 HOH A 15 615 16 HOH HOH . C 3 HOH A 16 616 17 HOH HOH . C 3 HOH A 17 617 18 HOH HOH . C 3 HOH A 18 618 19 HOH HOH . C 3 HOH A 19 619 20 HOH HOH . C 3 HOH A 20 620 21 HOH HOH . C 3 HOH A 21 621 22 HOH HOH . C 3 HOH A 22 622 23 HOH HOH . C 3 HOH A 23 623 24 HOH HOH . C 3 HOH A 24 624 25 HOH HOH . C 3 HOH A 25 625 26 HOH HOH . C 3 HOH A 26 626 27 HOH HOH . C 3 HOH A 27 627 28 HOH HOH . C 3 HOH A 28 628 29 HOH HOH . C 3 HOH A 29 629 30 HOH HOH . C 3 HOH A 30 630 31 HOH HOH . C 3 HOH A 31 631 32 HOH HOH . C 3 HOH A 32 632 33 HOH HOH . C 3 HOH A 33 633 34 HOH HOH . C 3 HOH A 34 634 35 HOH HOH . C 3 HOH A 35 635 36 HOH HOH . C 3 HOH A 36 636 37 HOH HOH . C 3 HOH A 37 637 38 HOH HOH . C 3 HOH A 38 638 40 HOH HOH . C 3 HOH A 39 639 41 HOH HOH . C 3 HOH A 40 640 42 HOH HOH . C 3 HOH A 41 641 43 HOH HOH . C 3 HOH A 42 642 44 HOH HOH . C 3 HOH A 43 643 45 HOH HOH . C 3 HOH A 44 644 46 HOH HOH . C 3 HOH A 45 645 47 HOH HOH . C 3 HOH A 46 646 48 HOH HOH . C 3 HOH A 47 647 49 HOH HOH . C 3 HOH A 48 648 50 HOH HOH . C 3 HOH A 49 649 51 HOH HOH . C 3 HOH A 50 650 53 HOH HOH . C 3 HOH A 51 651 54 HOH HOH . C 3 HOH A 52 652 55 HOH HOH . C 3 HOH A 53 653 56 HOH HOH . C 3 HOH A 54 654 57 HOH HOH . C 3 HOH A 55 655 58 HOH HOH . C 3 HOH A 56 656 59 HOH HOH . C 3 HOH A 57 657 60 HOH HOH . C 3 HOH A 58 658 61 HOH HOH . C 3 HOH A 59 659 62 HOH HOH . C 3 HOH A 60 660 63 HOH HOH . C 3 HOH A 61 661 64 HOH HOH . C 3 HOH A 62 662 66 HOH HOH . C 3 HOH A 63 663 67 HOH HOH . C 3 HOH A 64 664 68 HOH HOH . C 3 HOH A 65 665 69 HOH HOH . C 3 HOH A 66 666 70 HOH HOH . C 3 HOH A 67 667 71 HOH HOH . C 3 HOH A 68 668 72 HOH HOH . C 3 HOH A 69 669 73 HOH HOH . C 3 HOH A 70 670 74 HOH HOH . C 3 HOH A 71 671 75 HOH HOH . C 3 HOH A 72 672 76 HOH HOH . C 3 HOH A 73 673 77 HOH HOH . C 3 HOH A 74 674 78 HOH HOH . C 3 HOH A 75 675 79 HOH HOH . C 3 HOH A 76 676 80 HOH HOH . C 3 HOH A 77 677 81 HOH HOH . C 3 HOH A 78 678 82 HOH HOH . C 3 HOH A 79 679 83 HOH HOH . C 3 HOH A 80 680 84 HOH HOH . C 3 HOH A 81 681 85 HOH HOH . C 3 HOH A 82 682 86 HOH HOH . C 3 HOH A 83 683 87 HOH HOH . C 3 HOH A 84 684 88 HOH HOH . C 3 HOH A 85 685 89 HOH HOH . C 3 HOH A 86 686 90 HOH HOH . C 3 HOH A 87 687 91 HOH HOH . C 3 HOH A 88 688 92 HOH HOH . C 3 HOH A 89 689 93 HOH HOH . C 3 HOH A 90 690 95 HOH HOH . C 3 HOH A 91 691 96 HOH HOH . C 3 HOH A 92 692 97 HOH HOH . C 3 HOH A 93 693 99 HOH HOH . C 3 HOH A 94 694 102 HOH HOH . C 3 HOH A 95 695 103 HOH HOH . C 3 HOH A 96 696 104 HOH HOH . C 3 HOH A 97 697 105 HOH HOH . C 3 HOH A 98 698 106 HOH HOH . C 3 HOH A 99 699 107 HOH HOH . C 3 HOH A 100 700 108 HOH HOH . C 3 HOH A 101 701 109 HOH HOH . C 3 HOH A 102 702 110 HOH HOH . C 3 HOH A 103 703 112 HOH HOH . C 3 HOH A 104 704 113 HOH HOH . C 3 HOH A 105 705 114 HOH HOH . C 3 HOH A 106 706 115 HOH HOH . C 3 HOH A 107 707 117 HOH HOH . C 3 HOH A 108 708 118 HOH HOH . C 3 HOH A 109 709 121 HOH HOH . C 3 HOH A 110 710 122 HOH HOH . C 3 HOH A 111 711 124 HOH HOH . C 3 HOH A 112 712 125 HOH HOH . C 3 HOH A 113 713 126 HOH HOH . C 3 HOH A 114 714 127 HOH HOH . C 3 HOH A 115 715 128 HOH HOH . C 3 HOH A 116 716 129 HOH HOH . C 3 HOH A 117 717 130 HOH HOH . C 3 HOH A 118 718 131 HOH HOH . C 3 HOH A 119 719 132 HOH HOH . C 3 HOH A 120 720 133 HOH HOH . C 3 HOH A 121 721 135 HOH HOH . C 3 HOH A 122 722 136 HOH HOH . C 3 HOH A 123 723 137 HOH HOH . C 3 HOH A 124 724 138 HOH HOH . C 3 HOH A 125 725 139 HOH HOH . C 3 HOH A 126 726 140 HOH HOH . C 3 HOH A 127 727 141 HOH HOH . C 3 HOH A 128 728 142 HOH HOH . C 3 HOH A 129 729 143 HOH HOH . C 3 HOH A 130 730 144 HOH HOH . C 3 HOH A 131 731 145 HOH HOH . C 3 HOH A 132 732 146 HOH HOH . C 3 HOH A 133 733 147 HOH HOH . C 3 HOH A 134 734 148 HOH HOH . C 3 HOH A 135 735 149 HOH HOH . C 3 HOH A 136 736 150 HOH HOH . C 3 HOH A 137 737 151 HOH HOH . C 3 HOH A 138 738 152 HOH HOH . C 3 HOH A 139 739 153 HOH HOH . C 3 HOH A 140 740 154 HOH HOH . C 3 HOH A 141 741 155 HOH HOH . C 3 HOH A 142 742 156 HOH HOH . C 3 HOH A 143 743 157 HOH HOH . C 3 HOH A 144 744 158 HOH HOH . C 3 HOH A 145 745 159 HOH HOH . C 3 HOH A 146 746 160 HOH HOH . C 3 HOH A 147 747 161 HOH HOH . C 3 HOH A 148 748 162 HOH HOH . C 3 HOH A 149 749 163 HOH HOH . C 3 HOH A 150 750 165 HOH HOH . C 3 HOH A 151 751 166 HOH HOH . C 3 HOH A 152 752 167 HOH HOH . C 3 HOH A 153 753 168 HOH HOH . C 3 HOH A 154 754 169 HOH HOH . C 3 HOH A 155 755 170 HOH HOH . C 3 HOH A 156 756 173 HOH HOH . C 3 HOH A 157 757 174 HOH HOH . C 3 HOH A 158 758 175 HOH HOH . C 3 HOH A 159 759 176 HOH HOH . C 3 HOH A 160 760 177 HOH HOH . C 3 HOH A 161 761 178 HOH HOH . C 3 HOH A 162 762 180 HOH HOH . C 3 HOH A 163 763 181 HOH HOH . C 3 HOH A 164 764 182 HOH HOH . C 3 HOH A 165 765 183 HOH HOH . C 3 HOH A 166 766 185 HOH HOH . C 3 HOH A 167 767 186 HOH HOH . C 3 HOH A 168 768 187 HOH HOH . C 3 HOH A 169 769 188 HOH HOH . C 3 HOH A 170 770 190 HOH HOH . C 3 HOH A 171 771 191 HOH HOH . C 3 HOH A 172 772 192 HOH HOH . C 3 HOH A 173 773 194 HOH HOH . C 3 HOH A 174 774 195 HOH HOH . C 3 HOH A 175 775 196 HOH HOH . C 3 HOH A 176 776 198 HOH HOH . C 3 HOH A 177 777 199 HOH HOH . C 3 HOH A 178 778 200 HOH HOH . C 3 HOH A 179 779 201 HOH HOH . C 3 HOH A 180 780 202 HOH HOH . C 3 HOH A 181 781 203 HOH HOH . C 3 HOH A 182 782 204 HOH HOH . C 3 HOH A 183 783 206 HOH HOH . C 3 HOH A 184 784 207 HOH HOH . C 3 HOH A 185 785 208 HOH HOH . C 3 HOH A 186 786 213 HOH HOH . C 3 HOH A 187 787 218 HOH HOH . C 3 HOH A 188 788 219 HOH HOH . C 3 HOH A 189 789 221 HOH HOH . C 3 HOH A 190 790 222 HOH HOH . C 3 HOH A 191 791 224 HOH HOH . C 3 HOH A 192 792 225 HOH HOH . C 3 HOH A 193 793 226 HOH HOH . C 3 HOH A 194 794 227 HOH HOH . C 3 HOH A 195 795 228 HOH HOH . C 3 HOH A 196 796 231 HOH HOH . C 3 HOH A 197 797 232 HOH HOH . C 3 HOH A 198 798 234 HOH HOH . C 3 HOH A 199 799 235 HOH HOH . C 3 HOH A 200 800 236 HOH HOH . C 3 HOH A 201 801 237 HOH HOH . C 3 HOH A 202 802 238 HOH HOH . C 3 HOH A 203 803 239 HOH HOH . C 3 HOH A 204 804 241 HOH HOH . C 3 HOH A 205 805 242 HOH HOH . C 3 HOH A 206 806 243 HOH HOH . C 3 HOH A 207 807 244 HOH HOH . C 3 HOH A 208 808 245 HOH HOH . C 3 HOH A 209 809 246 HOH HOH . C 3 HOH A 210 810 247 HOH HOH . C 3 HOH A 211 811 248 HOH HOH . C 3 HOH A 212 812 251 HOH HOH . C 3 HOH A 213 813 252 HOH HOH . C 3 HOH A 214 814 253 HOH HOH . C 3 HOH A 215 815 254 HOH HOH . C 3 HOH A 216 816 255 HOH HOH . C 3 HOH A 217 817 256 HOH HOH . C 3 HOH A 218 818 257 HOH HOH . C 3 HOH A 219 819 258 HOH HOH . C 3 HOH A 220 820 259 HOH HOH . C 3 HOH A 221 821 260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C A3T . . . B 2 13.237 2.119 32.068 1 35.11 ? C A3T 500 A 1 HETATM 2 N N A3T . . . B 2 11.009 2.623 31.047 1 31.62 ? N A3T 500 A 1 HETATM 3 O O A3T . . . B 2 13.031 0.752 31.886 1 31.63 ? O A3T 500 A 1 HETATM 4 N N1 A3T . . . B 2 18.156 -1.588 27.491 1 17.2 ? N1 A3T 500 A 1 HETATM 5 C C2 A3T . . . B 2 17.241 -0.616 27.462 1 16.76 ? C2 A3T 500 A 1 HETATM 6 N N3 A3T . . . B 2 17.259 0.402 28.331 1 18.67 ? N3 A3T 500 A 1 HETATM 7 C C4 A3T . . . B 2 18.229 0.476 29.263 1 18.06 ? C4 A3T 500 A 1 HETATM 8 C C5 A3T . . . B 2 19.215 -0.517 29.315 1 18.45 ? C5 A3T 500 A 1 HETATM 9 C C6 A3T . . . B 2 19.158 -1.573 28.409 1 16.76 ? C6 A3T 500 A 1 HETATM 10 N N6 A3T . . . B 2 20.07 -2.542 28.447 1 16.87 ? N6 A3T 500 A 1 HETATM 11 N N7 A3T . . . B 2 20.045 -0.199 30.32 1 18.95 ? N7 A3T 500 A 1 HETATM 12 C C8 A3T . . . B 2 19.598 0.957 30.867 1 18.58 ? C8 A3T 500 A 1 HETATM 13 N N8 A3T . . . B 2 14.434 2.808 32.109 1 29.56 ? N8 A3T 500 A 1 HETATM 14 N N9 A3T . . . B 2 18.494 1.363 30.229 1 19.62 ? N9 A3T 500 A 1 HETATM 15 C CA A3T . . . B 2 11.918 2.947 32.214 1 33.16 ? CA A3T 500 A 1 HETATM 16 C CB A3T . . . B 2 11.17 2.669 33.549 1 37.4 ? CB A3T 500 A 1 HETATM 17 O OG A3T . . . B 2 10.159 3.712 33.876 1 32.84 ? OG A3T 500 A 1 HETATM 18 C C1' A3T . . . B 2 17.728 2.632 30.5 1 21.45 ? C1' A3T 500 A 1 HETATM 19 C C2' A3T . . . B 2 16.197 2.616 30.478 1 23.33 ? C2' A3T 500 A 1 HETATM 20 O O2' A3T . . . B 2 15.718 3.935 30.136 1 20.52 ? O2' A3T 500 A 1 HETATM 21 C C3' A3T . . . B 2 15.797 2.267 31.913 1 25.77 ? C3' A3T 500 A 1 HETATM 22 C C4' A3T . . . B 2 16.899 3.048 32.677 1 25.94 ? C4' A3T 500 A 1 HETATM 23 O O4' A3T . . . B 2 18.111 3.113 31.791 1 24.31 ? O4' A3T 500 A 1 HETATM 24 C C5' A3T . . . B 2 17.368 2.43 34.017 1 27.93 ? C5' A3T 500 A 1 HETATM 25 O O5' A3T . . . B 2 18.406 1.464 33.789 1 29.53 ? O5' A3T 500 A 1 HETATM 26 C CG2 A3T . . . B 2 12.161 2.375 34.697 1 38.32 ? CG2 A3T 500 A 1 # _model_server_stats.io_time_ms 71 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #