data_4RRR # _model_server_result.job_id MRfvcH0BKIMOLAkufk0KOw _model_server_result.datetime_utc '2024-12-21 16:45:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rrr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 4RRR # _exptl.entry_id 4RRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.36 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3'-deoxy-3'-(L-threonylamino)adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RRR _cell.length_a 38.586 _cell.length_b 66.312 _cell.length_c 93.688 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C14 H21 N7 O5' _chem_comp.formula_weight 367.36 _chem_comp.id A3T _chem_comp.mon_nstd_flag . _chem_comp.name "3'-deoxy-3'-(L-threonylamino)adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O A3T doub 1 n n C N8 A3T sing 2 n n C CA A3T sing 3 n n N CA A3T sing 4 n n N1 C2 A3T doub 5 n y N1 C6 A3T sing 6 n y C2 N3 A3T sing 7 n y N3 C4 A3T doub 8 n y C4 C5 A3T sing 9 n y C4 N9 A3T sing 10 n y C5 C6 A3T doub 11 n y C5 N7 A3T sing 12 n y C6 N6 A3T sing 13 n n N7 C8 A3T doub 14 n y C8 N9 A3T sing 15 n y N8 C3' A3T sing 16 n n N9 C1' A3T sing 17 n n CA CB A3T sing 18 n n CB OG A3T sing 19 n n CB CG2 A3T sing 20 n n C1' C2' A3T sing 21 n n C1' O4' A3T sing 22 n n C2' O2' A3T sing 23 n n C2' C3' A3T sing 24 n n C3' C4' A3T sing 25 n n C4' O4' A3T sing 26 n n C4' C5' A3T sing 27 n n C5' O5' A3T sing 28 n n N HN A3T sing 29 n n N HNA A3T sing 30 n n C2 H2 A3T sing 31 n n N6 HN6 A3T sing 32 n n N6 HN6A A3T sing 33 n n C8 H8 A3T sing 34 n n N8 HN8 A3T sing 35 n n CA HA A3T sing 36 n n CB HB A3T sing 37 n n OG HOG A3T sing 38 n n C1' H1' A3T sing 39 n n C2' H2' A3T sing 40 n n O2' HO2' A3T sing 41 n n C3' H3' A3T sing 42 n n C4' H4' A3T sing 43 n n C5' H5' A3T sing 44 n n C5' "H5'A" A3T sing 45 n n O5' HO5' A3T sing 46 n n CG2 HG2 A3T sing 47 n n CG2 HG2A A3T sing 48 n n CG2 HG2B A3T sing 49 n n # _atom_sites.entry_id 4RRR _atom_sites.fract_transf_matrix[1][1] 0.025916 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A3T A 1 201 1 A3T A3T . D 2 A3T B 1 201 2 A3T A3T . E 3 HOH A 1 5001 5001 HOH HOH . E 3 HOH A 2 5002 5002 HOH HOH . E 3 HOH A 3 5003 5003 HOH HOH . E 3 HOH A 4 5004 5004 HOH HOH . E 3 HOH A 5 5005 5005 HOH HOH . E 3 HOH A 6 5006 5006 HOH HOH . E 3 HOH A 7 5007 5007 HOH HOH . E 3 HOH A 8 5008 5009 HOH HOH . E 3 HOH A 9 5009 5010 HOH HOH . E 3 HOH A 10 5010 5011 HOH HOH . E 3 HOH A 11 5011 5012 HOH HOH . E 3 HOH A 12 5012 5013 HOH HOH . E 3 HOH A 13 5013 5014 HOH HOH . E 3 HOH A 14 5014 5016 HOH HOH . E 3 HOH A 15 5015 5019 HOH HOH . E 3 HOH A 16 5016 5020 HOH HOH . E 3 HOH A 17 5017 5021 HOH HOH . E 3 HOH A 18 5018 5024 HOH HOH . E 3 HOH A 19 5019 5025 HOH HOH . E 3 HOH A 20 5020 5026 HOH HOH . E 3 HOH A 21 5021 5027 HOH HOH . E 3 HOH A 22 5022 5028 HOH HOH . E 3 HOH A 23 5023 5029 HOH HOH . E 3 HOH A 24 5024 5031 HOH HOH . E 3 HOH A 25 5025 5032 HOH HOH . E 3 HOH A 26 5026 5033 HOH HOH . E 3 HOH A 27 5027 5035 HOH HOH . E 3 HOH A 28 5028 5036 HOH HOH . E 3 HOH A 29 5029 5040 HOH HOH . E 3 HOH A 30 5030 5044 HOH HOH . E 3 HOH A 31 5031 5047 HOH HOH . E 3 HOH A 32 5032 5048 HOH HOH . E 3 HOH A 33 5033 5050 HOH HOH . E 3 HOH A 34 5034 5051 HOH HOH . E 3 HOH A 35 5035 5052 HOH HOH . E 3 HOH A 36 5036 5053 HOH HOH . E 3 HOH A 37 5037 5054 HOH HOH . E 3 HOH A 38 5038 5056 HOH HOH . E 3 HOH A 39 5039 5058 HOH HOH . E 3 HOH A 40 5040 5060 HOH HOH . E 3 HOH A 41 5041 5062 HOH HOH . E 3 HOH A 42 5042 5063 HOH HOH . E 3 HOH A 43 5043 5064 HOH HOH . E 3 HOH A 44 5044 5065 HOH HOH . E 3 HOH A 45 5045 5068 HOH HOH . E 3 HOH A 46 5046 5072 HOH HOH . E 3 HOH A 47 5047 5073 HOH HOH . E 3 HOH A 48 5048 5074 HOH HOH . E 3 HOH A 49 5049 5075 HOH HOH . E 3 HOH A 50 5050 5076 HOH HOH . E 3 HOH A 51 5051 5077 HOH HOH . E 3 HOH A 52 5052 5080 HOH HOH . E 3 HOH A 53 5053 5085 HOH HOH . E 3 HOH A 54 5054 5086 HOH HOH . E 3 HOH A 55 5055 5087 HOH HOH . E 3 HOH A 56 5056 5088 HOH HOH . E 3 HOH A 57 5057 5089 HOH HOH . E 3 HOH A 58 5058 5090 HOH HOH . E 3 HOH A 59 5059 5091 HOH HOH . E 3 HOH A 60 5060 5095 HOH HOH . E 3 HOH A 61 5061 5096 HOH HOH . E 3 HOH A 62 5062 5098 HOH HOH . E 3 HOH A 63 5063 5101 HOH HOH . E 3 HOH A 64 5064 5104 HOH HOH . E 3 HOH A 65 5065 5107 HOH HOH . E 3 HOH A 66 5066 5108 HOH HOH . E 3 HOH A 67 5067 5109 HOH HOH . E 3 HOH A 68 5068 5110 HOH HOH . E 3 HOH A 69 5069 5111 HOH HOH . E 3 HOH A 70 5070 5112 HOH HOH . E 3 HOH A 71 5071 5113 HOH HOH . E 3 HOH A 72 5072 5114 HOH HOH . E 3 HOH A 73 5073 5115 HOH HOH . E 3 HOH A 74 5074 5117 HOH HOH . E 3 HOH A 75 5075 5118 HOH HOH . E 3 HOH A 76 5076 5119 HOH HOH . E 3 HOH A 77 5077 5120 HOH HOH . E 3 HOH A 78 5078 5121 HOH HOH . E 3 HOH A 79 5079 5124 HOH HOH . E 3 HOH A 80 5080 5125 HOH HOH . E 3 HOH A 81 5081 5126 HOH HOH . E 3 HOH A 82 5082 5127 HOH HOH . E 3 HOH A 83 5083 5129 HOH HOH . E 3 HOH A 84 5084 5130 HOH HOH . E 3 HOH A 85 5085 5131 HOH HOH . E 3 HOH A 86 5086 5132 HOH HOH . E 3 HOH A 87 5087 5133 HOH HOH . E 3 HOH A 88 5088 5134 HOH HOH . E 3 HOH A 89 5089 5136 HOH HOH . E 3 HOH A 90 5090 5138 HOH HOH . E 3 HOH A 91 5091 5142 HOH HOH . E 3 HOH A 92 5092 5143 HOH HOH . E 3 HOH A 93 5093 5144 HOH HOH . E 3 HOH A 94 5094 5147 HOH HOH . E 3 HOH A 95 5095 5149 HOH HOH . E 3 HOH A 96 5096 5150 HOH HOH . E 3 HOH A 97 5097 5152 HOH HOH . E 3 HOH A 98 5098 5154 HOH HOH . E 3 HOH A 99 5099 5156 HOH HOH . E 3 HOH A 100 5100 5157 HOH HOH . E 3 HOH A 101 5101 5158 HOH HOH . E 3 HOH A 102 5102 5159 HOH HOH . E 3 HOH A 103 5103 5160 HOH HOH . E 3 HOH A 104 5104 5161 HOH HOH . E 3 HOH A 105 5105 5162 HOH HOH . E 3 HOH A 106 5106 5163 HOH HOH . E 3 HOH A 107 5107 5165 HOH HOH . E 3 HOH A 108 5108 5166 HOH HOH . E 3 HOH A 109 5109 5168 HOH HOH . E 3 HOH A 110 5110 5169 HOH HOH . E 3 HOH A 111 5111 5170 HOH HOH . E 3 HOH A 112 5112 5171 HOH HOH . E 3 HOH A 113 5113 5172 HOH HOH . E 3 HOH A 114 5114 5175 HOH HOH . E 3 HOH A 115 5115 5176 HOH HOH . E 3 HOH A 116 5116 5179 HOH HOH . E 3 HOH A 117 5117 5181 HOH HOH . E 3 HOH A 118 5118 5182 HOH HOH . E 3 HOH A 119 5119 5184 HOH HOH . E 3 HOH A 120 5120 5186 HOH HOH . E 3 HOH A 121 5121 5187 HOH HOH . E 3 HOH A 122 5122 5191 HOH HOH . E 3 HOH A 123 5123 5195 HOH HOH . E 3 HOH A 124 5124 5200 HOH HOH . E 3 HOH A 125 5125 5206 HOH HOH . E 3 HOH A 126 5126 5209 HOH HOH . E 3 HOH A 127 5127 5128 HOH HOH . F 3 HOH B 1 301 5008 HOH HOH . F 3 HOH B 2 302 5015 HOH HOH . F 3 HOH B 3 303 5017 HOH HOH . F 3 HOH B 4 304 5018 HOH HOH . F 3 HOH B 5 305 5022 HOH HOH . F 3 HOH B 6 306 5023 HOH HOH . F 3 HOH B 7 307 5030 HOH HOH . F 3 HOH B 8 308 5034 HOH HOH . F 3 HOH B 9 309 5037 HOH HOH . F 3 HOH B 10 310 5038 HOH HOH . F 3 HOH B 11 311 5039 HOH HOH . F 3 HOH B 12 312 5041 HOH HOH . F 3 HOH B 13 313 5042 HOH HOH . F 3 HOH B 14 314 5043 HOH HOH . F 3 HOH B 15 315 5045 HOH HOH . F 3 HOH B 16 316 5046 HOH HOH . F 3 HOH B 17 317 5049 HOH HOH . F 3 HOH B 18 318 5055 HOH HOH . F 3 HOH B 19 319 5057 HOH HOH . F 3 HOH B 20 320 5059 HOH HOH . F 3 HOH B 21 321 5061 HOH HOH . F 3 HOH B 22 322 5066 HOH HOH . F 3 HOH B 23 323 5067 HOH HOH . F 3 HOH B 24 324 5069 HOH HOH . F 3 HOH B 25 325 5070 HOH HOH . F 3 HOH B 26 326 5071 HOH HOH . F 3 HOH B 27 327 5078 HOH HOH . F 3 HOH B 28 328 5079 HOH HOH . F 3 HOH B 29 329 5081 HOH HOH . F 3 HOH B 30 330 5082 HOH HOH . F 3 HOH B 31 331 5083 HOH HOH . F 3 HOH B 32 332 5084 HOH HOH . F 3 HOH B 33 333 5092 HOH HOH . F 3 HOH B 34 334 5093 HOH HOH . F 3 HOH B 35 335 5094 HOH HOH . F 3 HOH B 36 336 5097 HOH HOH . F 3 HOH B 37 337 5099 HOH HOH . F 3 HOH B 38 338 5100 HOH HOH . F 3 HOH B 39 339 5102 HOH HOH . F 3 HOH B 40 340 5103 HOH HOH . F 3 HOH B 41 341 5105 HOH HOH . F 3 HOH B 42 342 5106 HOH HOH . F 3 HOH B 43 343 5116 HOH HOH . F 3 HOH B 44 344 5122 HOH HOH . F 3 HOH B 45 345 5123 HOH HOH . F 3 HOH B 46 346 5135 HOH HOH . F 3 HOH B 47 347 5137 HOH HOH . F 3 HOH B 48 348 5139 HOH HOH . F 3 HOH B 49 349 5140 HOH HOH . F 3 HOH B 50 350 5141 HOH HOH . F 3 HOH B 51 351 5145 HOH HOH . F 3 HOH B 52 352 5146 HOH HOH . F 3 HOH B 53 353 5148 HOH HOH . F 3 HOH B 54 354 5151 HOH HOH . F 3 HOH B 55 355 5153 HOH HOH . F 3 HOH B 56 356 5155 HOH HOH . F 3 HOH B 57 357 5164 HOH HOH . F 3 HOH B 58 358 5167 HOH HOH . F 3 HOH B 59 359 5173 HOH HOH . F 3 HOH B 60 360 5174 HOH HOH . F 3 HOH B 61 361 5177 HOH HOH . F 3 HOH B 62 362 5178 HOH HOH . F 3 HOH B 63 363 5180 HOH HOH . F 3 HOH B 64 364 5183 HOH HOH . F 3 HOH B 65 365 5185 HOH HOH . F 3 HOH B 66 366 5188 HOH HOH . F 3 HOH B 67 367 5189 HOH HOH . F 3 HOH B 68 368 5190 HOH HOH . F 3 HOH B 69 369 5192 HOH HOH . F 3 HOH B 70 370 5193 HOH HOH . F 3 HOH B 71 371 5194 HOH HOH . F 3 HOH B 72 372 5196 HOH HOH . F 3 HOH B 73 373 5197 HOH HOH . F 3 HOH B 74 374 5198 HOH HOH . F 3 HOH B 75 375 5199 HOH HOH . F 3 HOH B 76 376 5201 HOH HOH . F 3 HOH B 77 377 5202 HOH HOH . F 3 HOH B 78 378 5203 HOH HOH . F 3 HOH B 79 379 5204 HOH HOH . F 3 HOH B 80 380 5205 HOH HOH . F 3 HOH B 81 381 5207 HOH HOH . F 3 HOH B 82 382 5208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C A3T . . . D 2 -22.186 -5.905 -2.902 1 19.58 ? C A3T 201 B 1 HETATM 2 N N A3T . . . D 2 -20.09 -6.548 -1.791 1 19.05 ? N A3T 201 B 1 HETATM 3 O O A3T . . . D 2 -22.15 -4.687 -2.298 1 20.27 ? O A3T 201 B 1 HETATM 4 N N1 A3T . . . D 2 -23.436 0.851 -5.139 1 20.65 ? N1 A3T 201 B 1 HETATM 5 C C2 A3T . . . D 2 -22.536 -0.102 -5.298 1 20.38 ? C2 A3T 201 B 1 HETATM 6 N N3 A3T . . . D 2 -22.878 -1.326 -5.664 1 19.9 ? N3 A3T 201 B 1 HETATM 7 C C4 A3T . . . D 2 -24.161 -1.636 -5.884 1 20.24 ? C4 A3T 201 B 1 HETATM 8 C C5 A3T . . . D 2 -25.136 -0.66 -5.722 1 19.96 ? C5 A3T 201 B 1 HETATM 9 C C6 A3T . . . D 2 -24.74 0.614 -5.341 1 20.59 ? C6 A3T 201 B 1 HETATM 10 N N6 A3T . . . D 2 -25.637 1.587 -5.198 1 19.46 ? N6 A3T 201 B 1 HETATM 11 N N7 A3T . . . D 2 -26.311 -1.217 -5.997 1 20.38 ? N7 A3T 201 B 1 HETATM 12 C C8 A3T . . . D 2 -26.09 -2.489 -6.322 1 21.25 ? C8 A3T 201 B 1 HETATM 13 N N8 A3T . . . D 2 -22.881 -6.173 -4.003 1 21.33 ? N8 A3T 201 B 1 HETATM 14 N N9 A3T . . . D 2 -24.785 -2.748 -6.265 1 20.38 ? N9 A3T 201 B 1 HETATM 15 C CA A3T . . . D 2 -21.376 -7.054 -2.294 1 19.51 ? CA A3T 201 B 1 HETATM 16 C CB A3T . . . D 2 -22.164 -7.686 -1.144 1 18.48 ? CB A3T 201 B 1 HETATM 17 O OG A3T . . . D 2 -21.52 -8.9 -0.747 1 17.2 ? OG A3T 201 B 1 HETATM 18 C C1' A3T . . . D 2 -24.159 -4.021 -6.689 1 20.97 ? C1' A3T 201 B 1 HETATM 19 C C2' A3T . . . D 2 -22.977 -4.462 -5.821 1 20.1 ? C2' A3T 201 B 1 HETATM 20 O O2' A3T . . . D 2 -22.175 -5.394 -6.55 1 21.07 ? O2' A3T 201 B 1 HETATM 21 C C3' A3T . . . D 2 -23.719 -5.188 -4.703 1 21.78 ? C3' A3T 201 B 1 HETATM 22 C C4' A3T . . . D 2 -24.797 -5.928 -5.493 1 21.96 ? C4' A3T 201 B 1 HETATM 23 O O4' A3T . . . D 2 -25.161 -5.047 -6.57 1 21.34 ? O4' A3T 201 B 1 HETATM 24 C C5' A3T . . . D 2 -25.995 -6.146 -4.567 1 22.13 ? C5' A3T 201 B 1 HETATM 25 O O5' A3T . . . D 2 -26.427 -4.882 -4.056 1 22.02 ? O5' A3T 201 B 1 HETATM 26 C CG2 A3T . . . D 2 -23.621 -7.937 -1.537 1 18.88 ? CG2 A3T 201 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 26 #