data_4RS0 # _model_server_result.job_id TuKsUytY0_CWzXOI2Kh5ZA _model_server_result.datetime_utc '2024-10-13 18:20:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rs0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":705}' # _entry.id 4RS0 # _exptl.entry_id 4RS0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RS0 _cell.length_a 173.207 _cell.length_b 173.207 _cell.length_c 204.364 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RS0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_544 x,-y-1/2,-z-3/4 1 0 0 0 -1 0 0 0 -1 0 -86.6035 -153.273 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 671 NAG 2 n B NAG 2 B 2 NAG A 672 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 36 1_555 A SG CYS 15 A CYS 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 5 A CYS 37 1_555 A SG CYS 128 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 9 A CYS 41 1_555 A SG CYS 25 A CYS 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 27 A CYS 59 1_555 A SG CYS 37 A CYS 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf5 A SG CYS 538 A CYS 569 1_555 A SG CYS 544 A CYS 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A ND2 ASN 36 A ASN 68 1_555 D C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale2 A ND2 ASN 113 A ASN 144 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale3 A ND2 ASN 379 A ASN 410 1_555 E C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 318 n n C1 O1 NAG sing 319 n n C1 O5 NAG sing 320 n n C1 H1 NAG sing 321 n n C2 C3 NAG sing 322 n n C2 N2 NAG sing 323 n n C2 H2 NAG sing 324 n n C3 C4 NAG sing 325 n n C3 O3 NAG sing 326 n n C3 H3 NAG sing 327 n n C4 C5 NAG sing 328 n n C4 O4 NAG sing 329 n n C4 H4 NAG sing 330 n n C5 C6 NAG sing 331 n n C5 O5 NAG sing 332 n n C5 H5 NAG sing 333 n n C6 O6 NAG sing 334 n n C6 H61 NAG sing 335 n n C6 H62 NAG sing 336 n n C7 C8 NAG sing 337 n n C7 N2 NAG sing 338 n n C7 O7 NAG doub 339 n n C8 H81 NAG sing 340 n n C8 H82 NAG sing 341 n n C8 H83 NAG sing 342 n n N2 HN2 NAG sing 343 n n O1 HO1 NAG sing 344 n n O3 HO3 NAG sing 345 n n O4 HO4 NAG sing 346 n n O6 HO6 NAG sing 347 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4RS0 _atom_sites.fract_transf_matrix[1][1] 0.005773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004893 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 BOG A 1 703 1 BOG BOG . D 4 NAG A 1 704 661 NAG NAG . E 4 NAG A 1 705 681 NAG NAG . F 5 IBP A 1 706 1 IBP IBP . G 6 HOH A 1 801 1 HOH HOH . G 6 HOH A 2 802 2 HOH HOH . G 6 HOH A 3 803 3 HOH HOH . G 6 HOH A 4 804 4 HOH HOH . G 6 HOH A 5 805 5 HOH HOH . G 6 HOH A 6 806 6 HOH HOH . G 6 HOH A 7 807 7 HOH HOH . G 6 HOH A 8 808 8 HOH HOH . G 6 HOH A 9 809 9 HOH HOH . G 6 HOH A 10 810 10 HOH HOH . G 6 HOH A 11 811 11 HOH HOH . G 6 HOH A 12 812 12 HOH HOH . G 6 HOH A 13 813 13 HOH HOH . G 6 HOH A 14 814 14 HOH HOH . G 6 HOH A 15 815 15 HOH HOH . G 6 HOH A 16 816 16 HOH HOH . G 6 HOH A 17 817 17 HOH HOH . G 6 HOH A 18 818 18 HOH HOH . G 6 HOH A 19 819 19 HOH HOH . G 6 HOH A 20 820 20 HOH HOH . G 6 HOH A 21 821 21 HOH HOH . G 6 HOH A 22 822 22 HOH HOH . G 6 HOH A 23 823 23 HOH HOH . G 6 HOH A 24 824 24 HOH HOH . G 6 HOH A 25 825 25 HOH HOH . G 6 HOH A 26 826 26 HOH HOH . G 6 HOH A 27 827 27 HOH HOH . G 6 HOH A 28 828 28 HOH HOH . G 6 HOH A 29 829 29 HOH HOH . G 6 HOH A 30 830 30 HOH HOH . G 6 HOH A 31 831 31 HOH HOH . G 6 HOH A 32 832 32 HOH HOH . G 6 HOH A 33 833 33 HOH HOH . G 6 HOH A 34 834 34 HOH HOH . G 6 HOH A 35 835 35 HOH HOH . G 6 HOH A 36 836 36 HOH HOH . G 6 HOH A 37 837 37 HOH HOH . G 6 HOH A 38 838 38 HOH HOH . G 6 HOH A 39 839 39 HOH HOH . G 6 HOH A 40 840 40 HOH HOH . G 6 HOH A 41 841 41 HOH HOH . G 6 HOH A 42 842 42 HOH HOH . G 6 HOH A 43 843 43 HOH HOH . G 6 HOH A 44 844 44 HOH HOH . G 6 HOH A 45 845 45 HOH HOH . G 6 HOH A 46 846 46 HOH HOH . G 6 HOH A 47 847 47 HOH HOH . G 6 HOH A 48 848 48 HOH HOH . G 6 HOH A 49 849 49 HOH HOH . G 6 HOH A 50 850 50 HOH HOH . G 6 HOH A 51 851 51 HOH HOH . G 6 HOH A 52 852 52 HOH HOH . G 6 HOH A 53 853 53 HOH HOH . G 6 HOH A 54 854 54 HOH HOH . G 6 HOH A 55 855 55 HOH HOH . G 6 HOH A 56 856 56 HOH HOH . G 6 HOH A 57 857 57 HOH HOH . G 6 HOH A 58 858 58 HOH HOH . G 6 HOH A 59 859 59 HOH HOH . G 6 HOH A 60 860 60 HOH HOH . G 6 HOH A 61 861 61 HOH HOH . G 6 HOH A 62 862 62 HOH HOH . G 6 HOH A 63 863 63 HOH HOH . G 6 HOH A 64 864 64 HOH HOH . G 6 HOH A 65 865 65 HOH HOH . G 6 HOH A 66 866 66 HOH HOH . G 6 HOH A 67 867 67 HOH HOH . G 6 HOH A 68 868 68 HOH HOH . G 6 HOH A 69 869 69 HOH HOH . G 6 HOH A 70 870 70 HOH HOH . G 6 HOH A 71 871 71 HOH HOH . G 6 HOH A 72 872 72 HOH HOH . G 6 HOH A 73 873 73 HOH HOH . G 6 HOH A 74 874 74 HOH HOH . G 6 HOH A 75 875 75 HOH HOH . G 6 HOH A 76 876 76 HOH HOH . G 6 HOH A 77 877 77 HOH HOH . G 6 HOH A 78 878 78 HOH HOH . G 6 HOH A 79 879 79 HOH HOH . G 6 HOH A 80 880 80 HOH HOH . G 6 HOH A 81 881 81 HOH HOH . G 6 HOH A 82 882 82 HOH HOH . G 6 HOH A 83 883 83 HOH HOH . G 6 HOH A 84 884 84 HOH HOH . G 6 HOH A 85 885 85 HOH HOH . G 6 HOH A 86 886 86 HOH HOH . G 6 HOH A 87 887 87 HOH HOH . G 6 HOH A 88 888 88 HOH HOH . G 6 HOH A 89 889 89 HOH HOH . G 6 HOH A 90 890 90 HOH HOH . G 6 HOH A 91 891 91 HOH HOH . G 6 HOH A 92 892 92 HOH HOH . G 6 HOH A 93 893 93 HOH HOH . G 6 HOH A 94 894 94 HOH HOH . G 6 HOH A 95 895 95 HOH HOH . G 6 HOH A 96 896 96 HOH HOH . G 6 HOH A 97 897 97 HOH HOH . G 6 HOH A 98 898 98 HOH HOH . G 6 HOH A 99 899 99 HOH HOH . G 6 HOH A 100 900 100 HOH HOH . G 6 HOH A 101 901 101 HOH HOH . G 6 HOH A 102 902 102 HOH HOH . G 6 HOH A 103 903 103 HOH HOH . G 6 HOH A 104 904 104 HOH HOH . G 6 HOH A 105 905 105 HOH HOH . G 6 HOH A 106 906 106 HOH HOH . G 6 HOH A 107 907 107 HOH HOH . G 6 HOH A 108 908 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 4 -25.429 -5.455 -82.665 1 83.3 ? C1 NAG 705 A 1 HETATM 2 C C2 NAG . . . E 4 -26.368 -4.697 -81.728 1 95.41 ? C2 NAG 705 A 1 HETATM 3 C C3 NAG . . . E 4 -27.258 -3.749 -82.529 1 97.2 ? C3 NAG 705 A 1 HETATM 4 C C4 NAG . . . E 4 -26.412 -2.849 -83.421 1 99.8 ? C4 NAG 705 A 1 HETATM 5 C C5 NAG . . . E 4 -25.474 -3.693 -84.28 1 88.23 ? C5 NAG 705 A 1 HETATM 6 C C6 NAG . . . E 4 -24.522 -2.864 -85.111 1 86.75 ? C6 NAG 705 A 1 HETATM 7 C C7 NAG . . . E 4 -27.127 -5.672 -79.607 1 100.47 ? C7 NAG 705 A 1 HETATM 8 C C8 NAG . . . E 4 -28.026 -6.682 -78.96 1 98 ? C8 NAG 705 A 1 HETATM 9 N N2 NAG . . . E 4 -27.175 -5.616 -80.942 1 97.89 ? N2 NAG 705 A 1 HETATM 10 O O3 NAG . . . E 4 -28.032 -2.958 -81.634 1 94.45 ? O3 NAG 705 A 1 HETATM 11 O O4 NAG . . . E 4 -27.25 -2.063 -84.26 1 88.88 ? O4 NAG 705 A 1 HETATM 12 O O5 NAG . . . E 4 -24.667 -4.528 -83.437 1 81.48 ? O5 NAG 705 A 1 HETATM 13 O O6 NAG . . . E 4 -23.752 -3.678 -85.985 1 74.18 ? O6 NAG 705 A 1 HETATM 14 O O7 NAG . . . E 4 -26.391 -4.941 -78.951 1 89.85 ? O7 NAG 705 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 457 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #