data_4RSG # _model_server_result.job_id JCcd4X15JouhyQV-H4iDMg _model_server_result.datetime_utc '2024-12-23 07:30:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rsg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4RSG # _exptl.entry_id 4RSG _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RSG _cell.length_a 40.084 _cell.length_b 40.084 _cell.length_c 160.785 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc3 B O2B GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc4 B O1G GNP . A GNP 201 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc5 C MG MG . A MG 202 1_555 D O DOD . A DOD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc6 C MG MG . A MG 202 1_555 D O DOD . A DOD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 131 n n PG O2G GNP sing 132 n n PG O3G GNP sing 133 n n PG N3B GNP sing 134 n n O2G HOG2 GNP sing 135 n n O3G HOG3 GNP sing 136 n n N3B PB GNP sing 137 n n N3B HNB3 GNP sing 138 n n PB O1B GNP doub 139 n n PB O2B GNP sing 140 n n PB O3A GNP sing 141 n n O2B HOB2 GNP sing 142 n n O3A PA GNP sing 143 n n PA O1A GNP doub 144 n n PA O2A GNP sing 145 n n PA O5' GNP sing 146 n n O2A HOA2 GNP sing 147 n n O5' C5' GNP sing 148 n n C5' C4' GNP sing 149 n n C5' "H5'2" GNP sing 150 n n C5' "H5'1" GNP sing 151 n n C4' O4' GNP sing 152 n n C4' C3' GNP sing 153 n n C4' H4' GNP sing 154 n n O4' C1' GNP sing 155 n n C3' O3' GNP sing 156 n n C3' C2' GNP sing 157 n n C3' H3' GNP sing 158 n n O3' HO3' GNP sing 159 n n C2' O2' GNP sing 160 n n C2' C1' GNP sing 161 n n C2' H2' GNP sing 162 n n O2' HO2' GNP sing 163 n n C1' N9 GNP sing 164 n n C1' H1' GNP sing 165 n n N9 C8 GNP sing 166 n y N9 C4 GNP sing 167 n y C8 N7 GNP doub 168 n y C8 H8 GNP sing 169 n n N7 C5 GNP sing 170 n y C5 C6 GNP sing 171 n y C5 C4 GNP doub 172 n y C6 O6 GNP doub 173 n n C6 N1 GNP sing 174 n y N1 C2 GNP sing 175 n y N1 HN1 GNP sing 176 n n C2 N2 GNP sing 177 n n C2 N3 GNP doub 178 n y N2 HN21 GNP sing 179 n n N2 HN22 GNP sing 180 n n N3 C4 GNP sing 181 n y # _atom_sites.entry_id 4RSG _atom_sites.fract_transf_matrix[1][1] 0.024948 _atom_sites.fract_transf_matrix[1][2] 0.014404 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028807 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GNP A 1 201 167 GNP GNP . C 3 MG A 1 202 168 MG MG . D 4 DOD A 1 301 170 DOD DOD . D 4 DOD A 2 302 171 DOD DOD . D 4 DOD A 3 303 172 DOD DOD . D 4 DOD A 4 304 173 DOD DOD . D 4 DOD A 5 305 174 DOD DOD . D 4 DOD A 6 306 175 DOD DOD . D 4 DOD A 7 307 176 DOD DOD . D 4 DOD A 8 308 177 DOD DOD . D 4 DOD A 9 309 180 DOD DOD . D 4 DOD A 10 310 182 DOD DOD . D 4 DOD A 11 311 184 DOD DOD . D 4 DOD A 12 312 187 DOD DOD . D 4 DOD A 13 313 191 DOD DOD . D 4 DOD A 14 314 193 DOD DOD . D 4 DOD A 15 315 195 DOD DOD . D 4 DOD A 16 316 197 DOD DOD . D 4 DOD A 17 317 198 DOD DOD . D 4 DOD A 18 318 201 DOD DOD . D 4 DOD A 19 319 202 DOD DOD . D 4 DOD A 20 320 204 DOD DOD . D 4 DOD A 21 321 210 DOD DOD . D 4 DOD A 22 322 217 DOD DOD . D 4 DOD A 23 323 218 DOD DOD . D 4 DOD A 24 324 225 DOD DOD . D 4 DOD A 25 325 228 DOD DOD . D 4 DOD A 26 326 230 DOD DOD . D 4 DOD A 27 327 231 DOD DOD . D 4 DOD A 28 328 232 DOD DOD . D 4 DOD A 29 329 233 DOD DOD . D 4 DOD A 30 330 235 DOD DOD . D 4 DOD A 31 331 240 DOD DOD . D 4 DOD A 32 332 246 DOD DOD . D 4 DOD A 33 333 253 DOD DOD . D 4 DOD A 34 334 256 DOD DOD . D 4 DOD A 35 335 258 DOD DOD . D 4 DOD A 36 336 259 DOD DOD . D 4 DOD A 37 337 262 DOD DOD . D 4 DOD A 38 338 263 DOD DOD . D 4 DOD A 39 339 276 DOD DOD . D 4 DOD A 40 340 279 DOD DOD . D 4 DOD A 41 341 281 DOD DOD . D 4 DOD A 42 342 287 DOD DOD . D 4 DOD A 43 343 289 DOD DOD . D 4 DOD A 44 344 292 DOD DOD . D 4 DOD A 45 345 316 DOD DOD . D 4 DOD A 46 346 378 DOD DOD . D 4 DOD A 47 347 394 DOD DOD . D 4 DOD A 48 348 408 DOD DOD . D 4 DOD A 49 349 409 DOD DOD . D 4 DOD A 50 350 410 DOD DOD . D 4 DOD A 51 351 411 DOD DOD . D 4 DOD A 52 352 412 DOD DOD . D 4 DOD A 53 353 413 DOD DOD . D 4 DOD A 54 354 414 DOD DOD . D 4 DOD A 55 355 415 DOD DOD . D 4 DOD A 56 356 416 DOD DOD . D 4 DOD A 57 357 417 DOD DOD . D 4 DOD A 58 358 418 DOD DOD . D 4 DOD A 59 359 419 DOD DOD . D 4 DOD A 60 360 420 DOD DOD . D 4 DOD A 61 361 421 DOD DOD . D 4 DOD A 62 362 422 DOD DOD . D 4 DOD A 63 363 423 DOD DOD . D 4 DOD A 64 364 424 DOD DOD . D 4 DOD A 65 365 425 DOD DOD . D 4 DOD A 66 366 426 DOD DOD . D 4 DOD A 67 367 427 DOD DOD . D 4 DOD A 68 368 428 DOD DOD . D 4 DOD A 69 369 429 DOD DOD . D 4 DOD A 70 370 430 DOD DOD . D 4 DOD A 71 371 431 DOD DOD . D 4 DOD A 72 372 432 DOD DOD . D 4 DOD A 73 373 433 DOD DOD . D 4 DOD A 74 374 434 DOD DOD . D 4 DOD A 75 375 435 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . B 2 -5.193 14.551 -21.84 1 9.31 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . B 2 -6.728 14.452 -21.462 1 12.25 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . B 2 -5.09 14.64 -23.23 1 18 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . B 2 -4.278 15.571 -21.15 1 15.01 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . B 2 -4.611 12.945 -21.512 1 13.32 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . B 2 -3.816 12.564 -20.004 1 5.89 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . B 2 -2.466 13.219 -20.064 1 12.14 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . B 2 -4.929 13.094 -19.079 1 11.92 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . B 2 -3.652 11.002 -20.112 1 6.88 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . B 2 -4.825 9.898 -19.654 1 9.13 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . B 2 -4.707 9.944 -18.092 1 9.97 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . B 2 -6.09 10.319 -20.321 1 6.24 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . B 2 -4.205 8.569 -20.187 1 11.53 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . B 2 -3.543 8.298 -21.351 1 6.7 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . B 2 -3.319 6.842 -21.597 1 9.27 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . B 2 -2.18 6.257 -20.945 1 11.15 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . B 2 -4.555 5.972 -21.28 1 5.98 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . B 2 -4.838 5.178 -22.402 1 20.95 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . B 2 -4.17 5.413 -19.954 1 12.11 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . B 2 -4.838 4.35 -19.264 1 16.85 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . B 2 -2.581 5.457 -19.941 1 10.49 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . B 2 -1.773 5.496 -18.743 1 14.77 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . B 2 -1.89 6.47 -17.88 1 11.82 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . B 2 -1.084 6.312 -16.856 1 14.77 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . B 2 -0.458 5.227 -17.093 1 13.86 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . B 2 0.56 4.449 -16.442 1 16.13 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . B 2 0.924 4.91 -15.409 1 13.44 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . B 2 1.054 3.385 -16.896 1 14.95 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . B 2 0.591 2.888 -18.089 1 12.85 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . B 2 1.104 1.752 -18.562 1 17.51 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . B 2 -0.378 3.514 -18.819 1 12.28 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . B 2 -0.911 4.657 -18.367 1 18.03 ? C4 GNP 201 A 1 HETATM 33 D DOG2 GNP . . . B 2 -4.22 14.35 -23.48 1 21.6 ? DOG2 GNP 201 A 1 HETATM 34 D DNB3 GNP . . . B 2 -4.638 12.314 -22.176 1 15.99 ? DNB3 GNP 201 A 1 HETATM 35 H "H5'2" GNP . . . B 2 -4.064 8.664 -22.1 1 8.04 ? "H5'2" GNP 201 A 1 HETATM 36 H "H5'1" GNP . . . B 2 -2.67 8.749 -21.327 1 8.04 ? "H5'1" GNP 201 A 1 HETATM 37 H H4' GNP . . . B 2 -3.158 6.751 -22.563 1 11.13 ? H4' GNP 201 A 1 HETATM 38 H H3' GNP . . . B 2 -5.321 6.57 -21.14 1 7.17 ? H3' GNP 201 A 1 HETATM 39 D DO3' GNP . . . B 2 -5.612 5.41 -22.779 1 25.14 ? DO3' GNP 201 A 1 HETATM 40 H H2' GNP . . . B 2 -4.391 6.162 -19.36 1 14.54 ? H2' GNP 201 A 1 HETATM 41 D DO2' GNP . . . B 2 -5.49 4.672 -18.757 1 20.22 ? DO2' GNP 201 A 1 HETATM 42 H H1' GNP . . . B 2 -2.361 4.562 -20.283 1 12.59 ? H1' GNP 201 A 1 HETATM 43 H H8 GNP . . . B 2 -2.52 7.22 -17.97 1 14.18 ? H8 GNP 201 A 1 HETATM 44 D DN1 GNP . . . B 2 1.698 2.933 -16.423 1 17.94 ? DN1 GNP 201 A 1 HETATM 45 D DN21 GNP . . . B 2 1.566 1.19 -18.004 1 21.01 ? DN21 GNP 201 A 1 HETATM 46 D DN22 GNP . . . B 2 0.995 1.532 -19.446 1 21.01 ? DN22 GNP 201 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 227 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 46 #