data_4RSY # _model_server_result.job_id euBZI8LFYM-4xdtHyQFCvw _model_server_result.datetime_utc '2024-11-14 06:08:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rsy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":703}' # _entry.id 4RSY # _exptl.entry_id 4RSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 173.04 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'YTTERBIUM (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RSY _cell.length_a 76.961 _cell.length_b 86.803 _cell.length_c 98.207 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 68 A ASP 47 1_555 D YB YB . A YB 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc2 A OD1 ASP 68 A ASP 47 1_555 D YB YB . A YB 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc3 A NE2 HIS 320 A HIS 299 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc4 A OE1 GLU 339 A GLU 318 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 B O2 B3N . A B3N 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.948 ? metalc ? metalc6 B O4 B3N . A B3N 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc7 D YB YB . A YB 703 1_555 E OXT ACY . A ACY 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc8 D YB YB . A YB 703 1_555 E O ACY . A ACY 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc9 D YB YB . A YB 703 1_555 G O HOH . A HOH 924 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc10 D YB YB . A YB 703 1_555 G O HOH . A HOH 925 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? # _chem_comp.formula 'Yb 3' _chem_comp.formula_weight 173.04 _chem_comp.id YB _chem_comp.mon_nstd_flag . _chem_comp.name 'YTTERBIUM (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RSY _atom_sites.fract_transf_matrix[1][1] 0.012994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 B3N A 1 701 1 B3N H7 . C 3 ZN A 1 702 1 ZN ZN . D 4 YB A 1 703 1 YB YB . E 5 ACY A 1 704 1 ACY ACY . F 6 IMD A 1 705 1 IMD IMD . G 7 HOH A 1 801 3 HOH HOH . G 7 HOH A 2 802 5 HOH HOH . G 7 HOH A 3 803 6 HOH HOH . G 7 HOH A 4 804 7 HOH HOH . G 7 HOH A 5 805 8 HOH HOH . G 7 HOH A 6 806 9 HOH HOH . G 7 HOH A 7 807 10 HOH HOH . G 7 HOH A 8 808 11 HOH HOH . G 7 HOH A 9 809 12 HOH HOH . G 7 HOH A 10 810 13 HOH HOH . G 7 HOH A 11 811 14 HOH HOH . G 7 HOH A 12 812 15 HOH HOH . G 7 HOH A 13 813 16 HOH HOH . G 7 HOH A 14 814 17 HOH HOH . G 7 HOH A 15 815 18 HOH HOH . G 7 HOH A 16 816 19 HOH HOH . G 7 HOH A 17 817 20 HOH HOH . G 7 HOH A 18 818 21 HOH HOH . G 7 HOH A 19 819 22 HOH HOH . G 7 HOH A 20 820 23 HOH HOH . G 7 HOH A 21 821 24 HOH HOH . G 7 HOH A 22 822 25 HOH HOH . G 7 HOH A 23 823 26 HOH HOH . G 7 HOH A 24 824 27 HOH HOH . G 7 HOH A 25 825 28 HOH HOH . G 7 HOH A 26 826 29 HOH HOH . G 7 HOH A 27 827 30 HOH HOH . G 7 HOH A 28 828 31 HOH HOH . G 7 HOH A 29 829 33 HOH HOH . G 7 HOH A 30 830 34 HOH HOH . G 7 HOH A 31 831 35 HOH HOH . G 7 HOH A 32 832 36 HOH HOH . G 7 HOH A 33 833 37 HOH HOH . G 7 HOH A 34 834 38 HOH HOH . G 7 HOH A 35 835 39 HOH HOH . G 7 HOH A 36 836 40 HOH HOH . G 7 HOH A 37 837 41 HOH HOH . G 7 HOH A 38 838 42 HOH HOH . G 7 HOH A 39 839 43 HOH HOH . G 7 HOH A 40 840 44 HOH HOH . G 7 HOH A 41 841 45 HOH HOH . G 7 HOH A 42 842 46 HOH HOH . G 7 HOH A 43 843 47 HOH HOH . G 7 HOH A 44 844 48 HOH HOH . G 7 HOH A 45 845 49 HOH HOH . G 7 HOH A 46 846 50 HOH HOH . G 7 HOH A 47 847 51 HOH HOH . G 7 HOH A 48 848 52 HOH HOH . G 7 HOH A 49 849 53 HOH HOH . G 7 HOH A 50 850 54 HOH HOH . G 7 HOH A 51 851 55 HOH HOH . G 7 HOH A 52 852 56 HOH HOH . G 7 HOH A 53 853 57 HOH HOH . G 7 HOH A 54 854 58 HOH HOH . G 7 HOH A 55 855 59 HOH HOH . G 7 HOH A 56 856 60 HOH HOH . G 7 HOH A 57 857 61 HOH HOH . G 7 HOH A 58 858 62 HOH HOH . G 7 HOH A 59 859 63 HOH HOH . G 7 HOH A 60 860 64 HOH HOH . G 7 HOH A 61 861 65 HOH HOH . G 7 HOH A 62 862 66 HOH HOH . G 7 HOH A 63 863 67 HOH HOH . G 7 HOH A 64 864 68 HOH HOH . G 7 HOH A 65 865 69 HOH HOH . G 7 HOH A 66 866 70 HOH HOH . G 7 HOH A 67 867 71 HOH HOH . G 7 HOH A 68 868 72 HOH HOH . G 7 HOH A 69 869 73 HOH HOH . G 7 HOH A 70 870 74 HOH HOH . G 7 HOH A 71 871 75 HOH HOH . G 7 HOH A 72 872 76 HOH HOH . G 7 HOH A 73 873 77 HOH HOH . G 7 HOH A 74 874 78 HOH HOH . G 7 HOH A 75 875 79 HOH HOH . G 7 HOH A 76 876 80 HOH HOH . G 7 HOH A 77 877 81 HOH HOH . G 7 HOH A 78 878 82 HOH HOH . G 7 HOH A 79 879 83 HOH HOH . G 7 HOH A 80 880 84 HOH HOH . G 7 HOH A 81 881 85 HOH HOH . G 7 HOH A 82 882 86 HOH HOH . G 7 HOH A 83 883 87 HOH HOH . G 7 HOH A 84 884 88 HOH HOH . G 7 HOH A 85 885 89 HOH HOH . G 7 HOH A 86 886 90 HOH HOH . G 7 HOH A 87 887 91 HOH HOH . G 7 HOH A 88 888 92 HOH HOH . G 7 HOH A 89 889 93 HOH HOH . G 7 HOH A 90 890 94 HOH HOH . G 7 HOH A 91 891 95 HOH HOH . G 7 HOH A 92 892 96 HOH HOH . G 7 HOH A 93 893 97 HOH HOH . G 7 HOH A 94 894 98 HOH HOH . G 7 HOH A 95 895 99 HOH HOH . G 7 HOH A 96 896 100 HOH HOH . G 7 HOH A 97 897 101 HOH HOH . G 7 HOH A 98 898 102 HOH HOH . G 7 HOH A 99 899 103 HOH HOH . G 7 HOH A 100 900 104 HOH HOH . G 7 HOH A 101 901 105 HOH HOH . G 7 HOH A 102 902 106 HOH HOH . G 7 HOH A 103 903 107 HOH HOH . G 7 HOH A 104 904 108 HOH HOH . G 7 HOH A 105 905 109 HOH HOH . G 7 HOH A 106 906 110 HOH HOH . G 7 HOH A 107 907 111 HOH HOH . G 7 HOH A 108 908 112 HOH HOH . G 7 HOH A 109 909 113 HOH HOH . G 7 HOH A 110 910 114 HOH HOH . G 7 HOH A 111 911 115 HOH HOH . G 7 HOH A 112 912 116 HOH HOH . G 7 HOH A 113 913 117 HOH HOH . G 7 HOH A 114 914 118 HOH HOH . G 7 HOH A 115 915 119 HOH HOH . G 7 HOH A 116 916 120 HOH HOH . G 7 HOH A 117 917 121 HOH HOH . G 7 HOH A 118 918 123 HOH HOH . G 7 HOH A 119 919 124 HOH HOH . G 7 HOH A 120 920 125 HOH HOH . G 7 HOH A 121 921 126 HOH HOH . G 7 HOH A 122 922 127 HOH HOH . G 7 HOH A 123 923 131 HOH HOH . G 7 HOH A 124 924 132 HOH HOH . G 7 HOH A 125 925 133 HOH HOH . G 7 HOH A 126 926 134 HOH HOH . G 7 HOH A 127 927 135 HOH HOH . G 7 HOH A 128 928 136 HOH HOH . G 7 HOH A 129 929 137 HOH HOH . G 7 HOH A 130 930 138 HOH HOH . G 7 HOH A 131 931 139 HOH HOH . G 7 HOH A 132 932 140 HOH HOH . G 7 HOH A 133 933 141 HOH HOH . G 7 HOH A 134 934 142 HOH HOH . G 7 HOH A 135 935 143 HOH HOH . G 7 HOH A 136 936 144 HOH HOH . G 7 HOH A 137 937 145 HOH HOH . G 7 HOH A 138 938 146 HOH HOH . G 7 HOH A 139 939 147 HOH HOH . G 7 HOH A 140 940 148 HOH HOH . G 7 HOH A 141 941 149 HOH HOH . G 7 HOH A 142 942 150 HOH HOH . G 7 HOH A 143 943 151 HOH HOH . G 7 HOH A 144 944 152 HOH HOH . G 7 HOH A 145 945 153 HOH HOH . G 7 HOH A 146 946 154 HOH HOH . G 7 HOH A 147 947 155 HOH HOH . G 7 HOH A 148 948 156 HOH HOH . G 7 HOH A 149 949 157 HOH HOH . G 7 HOH A 150 950 158 HOH HOH . G 7 HOH A 151 951 159 HOH HOH . G 7 HOH A 152 952 160 HOH HOH . G 7 HOH A 153 953 161 HOH HOH . G 7 HOH A 154 954 162 HOH HOH . G 7 HOH A 155 955 163 HOH HOH . G 7 HOH A 156 956 164 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol YB _atom_site.label_atom_id YB _atom_site.label_comp_id YB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -24.865 _atom_site.Cartn_y 37.989 _atom_site.Cartn_z 5.612 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 18.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id YB _atom_site.auth_comp_id YB _atom_site.auth_seq_id 703 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #