data_4RT5 # _model_server_result.job_id SWf4Vy0EsPt7m5wYvFnfKg _model_server_result.datetime_utc '2024-11-20 07:37:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":203}' # _entry.id 4RT5 # _exptl.entry_id 4RT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.19 _cell.angle_gamma 90 _cell.entry_id 4RT5 _cell.length_a 30.13 _cell.length_b 77.496 _cell.length_c 45.827 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 108 A LEU 105 1_555 A N MSE 109 A MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C MSE 109 A MSE 106 1_555 A N ASP 110 A ASP 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C LEU 108 B LEU 105 1_555 B N MSE 109 B MSE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 B C MSE 109 B MSE 106 1_555 B N ASP 110 B ASP 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? metalc ? metalc1 A NE2 HIS 21 A HIS 18 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc2 A NE2 HIS 72 A HIS 69 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc3 A OE2 GLU 107 A GLU 104 1_555 C NI NI . A NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 C NI NI . A NI 201 1_555 D O2 TRS . A TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 C NI NI . A NI 201 1_555 D O3 TRS . A TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc6 C NI NI . A NI 201 1_555 I O HOH . A HOH 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc7 B NE2 HIS 21 B HIS 18 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc8 B NE2 HIS 72 B HIS 69 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc9 B OE1 GLU 107 B GLU 104 1_555 F NI NI . B NI 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc10 F NI NI . B NI 201 1_555 G O2 TRS . B TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc11 F NI NI . B NI 201 1_555 G O1 TRS . B TRS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.482 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4RT5 _atom_sites.fract_transf_matrix[1][1] 0.03319 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.011551 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023105 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 201 130 NI NI . D 3 TRS A 1 202 131 TRS TRS . E 3 TRS A 1 203 132 TRS TRS . F 2 NI B 1 201 130 NI NI . G 3 TRS B 1 202 131 TRS TRS . H 4 GOL B 1 203 133 GOL GOL . I 5 HOH A 1 301 4 HOH HOH . I 5 HOH A 2 302 6 HOH HOH . I 5 HOH A 3 303 11 HOH HOH . I 5 HOH A 4 304 13 HOH HOH . I 5 HOH A 5 305 14 HOH HOH . I 5 HOH A 6 306 17 HOH HOH . I 5 HOH A 7 307 19 HOH HOH . I 5 HOH A 8 308 23 HOH HOH . I 5 HOH A 9 309 27 HOH HOH . I 5 HOH A 10 310 29 HOH HOH . I 5 HOH A 11 311 30 HOH HOH . I 5 HOH A 12 312 31 HOH HOH . I 5 HOH A 13 313 33 HOH HOH . I 5 HOH A 14 314 34 HOH HOH . I 5 HOH A 15 315 35 HOH HOH . I 5 HOH A 16 316 39 HOH HOH . I 5 HOH A 17 317 44 HOH HOH . I 5 HOH A 18 318 46 HOH HOH . I 5 HOH A 19 319 49 HOH HOH . I 5 HOH A 20 320 53 HOH HOH . I 5 HOH A 21 321 56 HOH HOH . I 5 HOH A 22 322 59 HOH HOH . I 5 HOH A 23 323 62 HOH HOH . I 5 HOH A 24 324 64 HOH HOH . I 5 HOH A 25 325 65 HOH HOH . I 5 HOH A 26 326 73 HOH HOH . I 5 HOH A 27 327 85 HOH HOH . I 5 HOH A 28 328 86 HOH HOH . I 5 HOH A 29 329 96 HOH HOH . I 5 HOH A 30 330 100 HOH HOH . I 5 HOH A 31 331 103 HOH HOH . I 5 HOH A 32 332 105 HOH HOH . I 5 HOH A 33 333 107 HOH HOH . I 5 HOH A 34 334 112 HOH HOH . I 5 HOH A 35 335 113 HOH HOH . I 5 HOH A 36 336 117 HOH HOH . I 5 HOH A 37 337 118 HOH HOH . I 5 HOH A 38 338 130 HOH HOH . I 5 HOH A 39 339 144 HOH HOH . I 5 HOH A 40 340 155 HOH HOH . I 5 HOH A 41 341 159 HOH HOH . I 5 HOH A 42 342 170 HOH HOH . I 5 HOH A 43 343 171 HOH HOH . I 5 HOH A 44 344 173 HOH HOH . I 5 HOH A 45 345 174 HOH HOH . I 5 HOH A 46 346 180 HOH HOH . I 5 HOH A 47 347 184 HOH HOH . I 5 HOH A 48 348 200 HOH HOH . I 5 HOH A 49 349 215 HOH HOH . I 5 HOH A 50 350 226 HOH HOH . I 5 HOH A 51 351 228 HOH HOH . I 5 HOH A 52 352 234 HOH HOH . I 5 HOH A 53 353 235 HOH HOH . I 5 HOH A 54 354 236 HOH HOH . I 5 HOH A 55 355 237 HOH HOH . I 5 HOH A 56 356 240 HOH HOH . I 5 HOH A 57 357 241 HOH HOH . I 5 HOH A 58 358 249 HOH HOH . I 5 HOH A 59 359 252 HOH HOH . I 5 HOH A 60 360 254 HOH HOH . I 5 HOH A 61 361 255 HOH HOH . I 5 HOH A 62 362 256 HOH HOH . I 5 HOH A 63 363 257 HOH HOH . I 5 HOH A 64 364 260 HOH HOH . I 5 HOH A 65 365 261 HOH HOH . I 5 HOH A 66 366 263 HOH HOH . I 5 HOH A 67 367 264 HOH HOH . I 5 HOH A 68 368 265 HOH HOH . I 5 HOH A 69 369 266 HOH HOH . I 5 HOH A 70 370 267 HOH HOH . I 5 HOH A 71 371 269 HOH HOH . I 5 HOH A 72 372 272 HOH HOH . I 5 HOH A 73 373 273 HOH HOH . I 5 HOH A 74 374 277 HOH HOH . I 5 HOH A 75 375 279 HOH HOH . I 5 HOH A 76 376 280 HOH HOH . I 5 HOH A 77 377 281 HOH HOH . I 5 HOH A 78 378 282 HOH HOH . J 5 HOH B 1 301 1 HOH HOH . J 5 HOH B 2 302 2 HOH HOH . J 5 HOH B 3 303 5 HOH HOH . J 5 HOH B 4 304 15 HOH HOH . J 5 HOH B 5 305 16 HOH HOH . J 5 HOH B 6 306 20 HOH HOH . J 5 HOH B 7 307 24 HOH HOH . J 5 HOH B 8 308 25 HOH HOH . J 5 HOH B 9 309 26 HOH HOH . J 5 HOH B 10 310 36 HOH HOH . J 5 HOH B 11 311 37 HOH HOH . J 5 HOH B 12 312 38 HOH HOH . J 5 HOH B 13 313 40 HOH HOH . J 5 HOH B 14 314 43 HOH HOH . J 5 HOH B 15 315 45 HOH HOH . J 5 HOH B 16 316 58 HOH HOH . J 5 HOH B 17 317 63 HOH HOH . J 5 HOH B 18 318 68 HOH HOH . J 5 HOH B 19 319 69 HOH HOH . J 5 HOH B 20 320 71 HOH HOH . J 5 HOH B 21 321 76 HOH HOH . J 5 HOH B 22 322 78 HOH HOH . J 5 HOH B 23 323 87 HOH HOH . J 5 HOH B 24 324 98 HOH HOH . J 5 HOH B 25 325 108 HOH HOH . J 5 HOH B 26 326 109 HOH HOH . J 5 HOH B 27 327 110 HOH HOH . J 5 HOH B 28 328 120 HOH HOH . J 5 HOH B 29 329 161 HOH HOH . J 5 HOH B 30 330 185 HOH HOH . J 5 HOH B 31 331 191 HOH HOH . J 5 HOH B 32 332 193 HOH HOH . J 5 HOH B 33 333 194 HOH HOH . J 5 HOH B 34 334 195 HOH HOH . J 5 HOH B 35 335 196 HOH HOH . J 5 HOH B 36 336 197 HOH HOH . J 5 HOH B 37 337 198 HOH HOH . J 5 HOH B 38 338 201 HOH HOH . J 5 HOH B 39 339 202 HOH HOH . J 5 HOH B 40 340 204 HOH HOH . J 5 HOH B 41 341 205 HOH HOH . J 5 HOH B 42 342 213 HOH HOH . J 5 HOH B 43 343 219 HOH HOH . J 5 HOH B 44 344 221 HOH HOH . J 5 HOH B 45 345 227 HOH HOH . J 5 HOH B 46 346 231 HOH HOH . J 5 HOH B 47 347 246 HOH HOH . J 5 HOH B 48 348 247 HOH HOH . J 5 HOH B 49 349 258 HOH HOH . J 5 HOH B 50 350 259 HOH HOH . J 5 HOH B 51 351 271 HOH HOH . J 5 HOH B 52 352 274 HOH HOH . J 5 HOH B 53 353 275 HOH HOH . J 5 HOH B 54 354 276 HOH HOH . J 5 HOH B 55 355 278 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . H 4 0.28 35.139 38.718 1 31.7 ? C1 GOL 203 B 1 HETATM 2 O O1 GOL . . . H 4 0.564 34.879 37.37 1 30.52 ? O1 GOL 203 B 1 HETATM 3 C C2 GOL . . . H 4 1.474 35.93 39.264 1 22.64 ? C2 GOL 203 B 1 HETATM 4 O O2 GOL . . . H 4 2.65 35.146 39.121 1 23.83 ? O2 GOL 203 B 1 HETATM 5 C C3 GOL . . . H 4 1.311 36.234 40.753 1 17.83 ? C3 GOL 203 B 1 HETATM 6 O O3 GOL . . . H 4 0.411 37.297 40.93 1 22.97 ? O3 GOL 203 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 6 #