data_4RTB # _model_server_result.job_id -RjU8-v11Wsu0fq0LxX6cA _model_server_result.datetime_utc '2024-11-28 21:19:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rtb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 4RTB # _exptl.entry_id 4RTB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RTB _cell.length_a 92.23 _cell.length_b 92.23 _cell.length_c 167.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RTB _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O SAM . A SAM 501 1_555 C FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc2 B N SAM . A SAM 501 1_555 C FE4 SF4 . A SF4 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.755 ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 277 n n N HN1 SAM sing 278 n n N HN2 SAM sing 279 n n CA C SAM sing 280 n n CA CB SAM sing 281 n n CA HA SAM sing 282 n n C O SAM doub 283 n n C OXT SAM sing 284 n n CB CG SAM sing 285 n n CB HB1 SAM sing 286 n n CB HB2 SAM sing 287 n n CG SD SAM sing 288 n n CG HG1 SAM sing 289 n n CG HG2 SAM sing 290 n n SD CE SAM sing 291 n n SD C5' SAM sing 292 n n CE HE1 SAM sing 293 n n CE HE2 SAM sing 294 n n CE HE3 SAM sing 295 n n C5' C4' SAM sing 296 n n C5' "H5'1" SAM sing 297 n n C5' "H5'2" SAM sing 298 n n C4' O4' SAM sing 299 n n C4' C3' SAM sing 300 n n C4' H4' SAM sing 301 n n O4' C1' SAM sing 302 n n C3' O3' SAM sing 303 n n C3' C2' SAM sing 304 n n C3' H3' SAM sing 305 n n O3' HO3' SAM sing 306 n n C2' O2' SAM sing 307 n n C2' C1' SAM sing 308 n n C2' H2' SAM sing 309 n n O2' HO2' SAM sing 310 n n C1' N9 SAM sing 311 n n C1' H1' SAM sing 312 n n N9 C8 SAM sing 313 n y N9 C4 SAM sing 314 n y C8 N7 SAM doub 315 n y C8 H8 SAM sing 316 n n N7 C5 SAM sing 317 n y C5 C6 SAM sing 318 n y C5 C4 SAM doub 319 n y C6 N6 SAM sing 320 n n C6 N1 SAM doub 321 n y N6 HN61 SAM sing 322 n n N6 HN62 SAM sing 323 n n N1 C2 SAM sing 324 n y C2 N3 SAM doub 325 n y C2 H2 SAM sing 326 n n N3 C4 SAM sing 327 n y # _atom_sites.entry_id 4RTB _atom_sites.fract_transf_matrix[1][1] 0.010842 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005967 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SAM A 1 501 501 SAM SAM . C 3 SF4 A 1 502 2460 SF4 SF4 . D 4 CL A 1 503 1 CL CL . E 4 CL A 1 504 3 CL CL . F 4 CL A 1 505 4 CL CL . G 4 CL A 1 506 5 CL CL . H 4 CL A 1 507 6 CL CL . I 5 HOH A 1 601 1 HOH HOH . I 5 HOH A 2 602 2 HOH HOH . I 5 HOH A 3 603 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . B 2 45.188 6.108 24.65 1 88.94 ? N SAM 501 A 1 HETATM 2 C CA SAM . . . B 2 43.868 6.353 24.069 1 88.8 ? CA SAM 501 A 1 HETATM 3 C C SAM . . . B 2 43.149 5.082 23.631 1 95.5 ? C SAM 501 A 1 HETATM 4 O O SAM . . . B 2 43.679 3.978 23.695 1 96.53 ? O SAM 501 A 1 HETATM 5 O OXT SAM . . . B 2 42.001 5.14 23.197 1 99.36 ? OXT SAM 501 A 1 HETATM 6 C CB SAM . . . B 2 43.951 7.3 22.873 1 84.44 ? CB SAM 501 A 1 HETATM 7 C CG SAM . . . B 2 45.302 7.414 22.168 1 82.71 ? CG SAM 501 A 1 HETATM 8 S SD SAM . . . B 2 45.928 5.965 21.282 1 102.66 ? SD SAM 501 A 1 HETATM 9 C CE SAM . . . B 2 47.642 6.483 21.161 1 132.84 ? CE SAM 501 A 1 HETATM 10 C C5' SAM . . . B 2 45.535 6.385 19.57 1 106 ? C5' SAM 501 A 1 HETATM 11 C C4' SAM . . . B 2 45.139 5.205 18.686 1 96.69 ? C4' SAM 501 A 1 HETATM 12 O O4' SAM . . . B 2 46.236 4.617 18.006 1 93.13 ? O4' SAM 501 A 1 HETATM 13 C C3' SAM . . . B 2 44.508 4.075 19.483 1 85.74 ? C3' SAM 501 A 1 HETATM 14 O O3' SAM . . . B 2 43.122 4.277 19.612 1 82.77 ? O3' SAM 501 A 1 HETATM 15 C C2' SAM . . . B 2 44.819 2.846 18.655 1 85.09 ? C2' SAM 501 A 1 HETATM 16 O O2' SAM . . . B 2 43.67 2.411 17.972 1 87.34 ? O2' SAM 501 A 1 HETATM 17 C C1' SAM . . . B 2 45.844 3.308 17.634 1 91.03 ? C1' SAM 501 A 1 HETATM 18 N N9 SAM . . . B 2 46.971 2.365 17.645 1 96.04 ? N9 SAM 501 A 1 HETATM 19 C C8 SAM . . . B 2 47.658 1.936 18.747 1 98.11 ? C8 SAM 501 A 1 HETATM 20 N N7 SAM . . . B 2 48.613 1.068 18.349 1 106.56 ? N7 SAM 501 A 1 HETATM 21 C C5 SAM . . . B 2 48.535 0.928 17.008 1 108.77 ? C5 SAM 501 A 1 HETATM 22 C C6 SAM . . . B 2 49.264 0.17 16.104 1 110.19 ? C6 SAM 501 A 1 HETATM 23 N N6 SAM . . . B 2 50.254 -0.608 16.531 1 119.13 ? N6 SAM 501 A 1 HETATM 24 N N1 SAM . . . B 2 48.954 0.227 14.762 1 105.28 ? N1 SAM 501 A 1 HETATM 25 C C2 SAM . . . B 2 47.925 1.036 14.325 1 101.05 ? C2 SAM 501 A 1 HETATM 26 N N3 SAM . . . B 2 47.204 1.788 15.229 1 98.9 ? N3 SAM 501 A 1 HETATM 27 C C4 SAM . . . B 2 47.505 1.736 16.55 1 103.09 ? C4 SAM 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 27 #