data_4RTF # _model_server_result.job_id zJb1r8UlWVf6zB1-9wBMfg _model_server_result.datetime_utc '2024-11-27 04:12:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 4RTF # _exptl.entry_id 4RTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RTF _cell.length_a 117.866 _cell.length_b 117.866 _cell.length_c 134.943 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4RTF _atom_sites.fract_transf_matrix[1][1] 0.008484 _atom_sites.fract_transf_matrix[1][2] 0.004898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP D 1 601 1 ATP ATP . C 3 PG4 D 1 602 1 PG4 PG4 . D 4 HOH D 1 701 1 HOH HOH . D 4 HOH D 2 702 2 HOH HOH . D 4 HOH D 3 703 3 HOH HOH . D 4 HOH D 4 704 4 HOH HOH . D 4 HOH D 5 705 5 HOH HOH . D 4 HOH D 6 706 6 HOH HOH . D 4 HOH D 7 707 7 HOH HOH . D 4 HOH D 8 708 8 HOH HOH . D 4 HOH D 9 709 9 HOH HOH . D 4 HOH D 10 710 10 HOH HOH . D 4 HOH D 11 711 11 HOH HOH . D 4 HOH D 12 712 12 HOH HOH . D 4 HOH D 13 713 13 HOH HOH . D 4 HOH D 14 714 14 HOH HOH . D 4 HOH D 15 715 15 HOH HOH . D 4 HOH D 16 716 16 HOH HOH . D 4 HOH D 17 717 17 HOH HOH . D 4 HOH D 18 718 18 HOH HOH . D 4 HOH D 19 719 19 HOH HOH . D 4 HOH D 20 720 20 HOH HOH . D 4 HOH D 21 721 21 HOH HOH . D 4 HOH D 22 722 22 HOH HOH . D 4 HOH D 23 723 23 HOH HOH . D 4 HOH D 24 724 24 HOH HOH . D 4 HOH D 25 725 25 HOH HOH . D 4 HOH D 26 726 26 HOH HOH . D 4 HOH D 27 727 27 HOH HOH . D 4 HOH D 28 728 28 HOH HOH . D 4 HOH D 29 729 29 HOH HOH . D 4 HOH D 30 730 30 HOH HOH . D 4 HOH D 31 731 31 HOH HOH . D 4 HOH D 32 732 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 57.53 -14.871 -21.317 1 105.24 ? PG ATP 601 D 1 HETATM 2 O O1G ATP . . . B 2 58.268 -14.996 -19.981 1 63.52 ? O1G ATP 601 D 1 HETATM 3 O O2G ATP . . . B 2 56.283 -15.746 -21.488 1 61.55 ? O2G ATP 601 D 1 HETATM 4 O O3G ATP . . . B 2 58.466 -15.096 -22.508 1 60.21 ? O3G ATP 601 D 1 HETATM 5 P PB ATP . . . B 2 56.067 -12.393 -20.551 1 48.76 ? PB ATP 601 D 1 HETATM 6 O O1B ATP . . . B 2 56.816 -11.984 -19.318 1 44.23 ? O1B ATP 601 D 1 HETATM 7 O O2B ATP . . . B 2 55.401 -11.317 -21.36 1 58.19 ? O2B ATP 601 D 1 HETATM 8 O O3B ATP . . . B 2 57.093 -13.264 -21.472 1 59.68 ? O3B ATP 601 D 1 HETATM 9 O O3A ATP . . . B 2 54.745 -13.247 -20.188 1 34.17 ? O3A ATP 601 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #