data_4RTF # _model_server_result.job_id 1W9RFQ5_UEjcNysJcWkseA _model_server_result.datetime_utc '2024-11-23 12:37:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rtf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 4RTF # _exptl.entry_id 4RTF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RTF _cell.length_a 117.866 _cell.length_b 117.866 _cell.length_c 134.943 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RTF _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 273 n n O1 HO1 PG4 sing 274 n n C1 C2 PG4 sing 275 n n C1 H11 PG4 sing 276 n n C1 H12 PG4 sing 277 n n C2 O2 PG4 sing 278 n n C2 H21 PG4 sing 279 n n C2 H22 PG4 sing 280 n n O2 C3 PG4 sing 281 n n C3 C4 PG4 sing 282 n n C3 H31 PG4 sing 283 n n C3 H32 PG4 sing 284 n n C4 O3 PG4 sing 285 n n C4 H41 PG4 sing 286 n n C4 H42 PG4 sing 287 n n O3 C5 PG4 sing 288 n n C5 C6 PG4 sing 289 n n C5 H51 PG4 sing 290 n n C5 H52 PG4 sing 291 n n C6 O4 PG4 sing 292 n n C6 H61 PG4 sing 293 n n C6 H62 PG4 sing 294 n n O4 C7 PG4 sing 295 n n C7 C8 PG4 sing 296 n n C7 H71 PG4 sing 297 n n C7 H72 PG4 sing 298 n n C8 O5 PG4 sing 299 n n C8 H81 PG4 sing 300 n n C8 H82 PG4 sing 301 n n O5 HO5 PG4 sing 302 n n # _atom_sites.entry_id 4RTF _atom_sites.fract_transf_matrix[1][1] 0.008484 _atom_sites.fract_transf_matrix[1][2] 0.004898 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009797 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP D 1 601 1 ATP ATP . C 3 PG4 D 1 602 1 PG4 PG4 . D 4 HOH D 1 701 1 HOH HOH . D 4 HOH D 2 702 2 HOH HOH . D 4 HOH D 3 703 3 HOH HOH . D 4 HOH D 4 704 4 HOH HOH . D 4 HOH D 5 705 5 HOH HOH . D 4 HOH D 6 706 6 HOH HOH . D 4 HOH D 7 707 7 HOH HOH . D 4 HOH D 8 708 8 HOH HOH . D 4 HOH D 9 709 9 HOH HOH . D 4 HOH D 10 710 10 HOH HOH . D 4 HOH D 11 711 11 HOH HOH . D 4 HOH D 12 712 12 HOH HOH . D 4 HOH D 13 713 13 HOH HOH . D 4 HOH D 14 714 14 HOH HOH . D 4 HOH D 15 715 15 HOH HOH . D 4 HOH D 16 716 16 HOH HOH . D 4 HOH D 17 717 17 HOH HOH . D 4 HOH D 18 718 18 HOH HOH . D 4 HOH D 19 719 19 HOH HOH . D 4 HOH D 20 720 20 HOH HOH . D 4 HOH D 21 721 21 HOH HOH . D 4 HOH D 22 722 22 HOH HOH . D 4 HOH D 23 723 23 HOH HOH . D 4 HOH D 24 724 24 HOH HOH . D 4 HOH D 25 725 25 HOH HOH . D 4 HOH D 26 726 26 HOH HOH . D 4 HOH D 27 727 27 HOH HOH . D 4 HOH D 28 728 28 HOH HOH . D 4 HOH D 29 729 29 HOH HOH . D 4 HOH D 30 730 30 HOH HOH . D 4 HOH D 31 731 31 HOH HOH . D 4 HOH D 32 732 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . C 3 55.153 -1.078 -44.758 0.5 62.43 ? O1 PG4 602 D 1 HETATM 2 C C1 PG4 . . . C 3 55.602 -2.338 -44.236 0.5 63.81 ? C1 PG4 602 D 1 HETATM 3 C C2 PG4 . . . C 3 57.004 -2.649 -44.753 0.5 61.33 ? C2 PG4 602 D 1 HETATM 4 O O2 PG4 . . . C 3 57.826 -3.058 -43.655 0.5 64.22 ? O2 PG4 602 D 1 HETATM 5 C C3 PG4 . . . C 3 59.134 -2.475 -43.683 0.5 56.73 ? C3 PG4 602 D 1 HETATM 6 C C4 PG4 . . . C 3 59.326 -1.554 -42.481 0.5 52.81 ? C4 PG4 602 D 1 HETATM 7 O O3 PG4 . . . C 3 59.553 -0.225 -42.953 0.5 59.22 ? O3 PG4 602 D 1 HETATM 8 C C5 PG4 . . . C 3 60.757 0.334 -42.417 0.5 62.33 ? C5 PG4 602 D 1 HETATM 9 C C6 PG4 . . . C 3 60.617 1.847 -42.269 0.5 64 ? C6 PG4 602 D 1 HETATM 10 O O4 PG4 . . . C 3 61.229 2.528 -43.375 0.5 58.17 ? O4 PG4 602 D 1 HETATM 11 C C7 PG4 . . . C 3 62.38 3.285 -43.007 0.5 48.74 ? C7 PG4 602 D 1 HETATM 12 C C8 PG4 . . . C 3 63.131 3.634 -44.282 0.5 58.39 ? C8 PG4 602 D 1 HETATM 13 O O5 PG4 . . . C 3 62.57 2.89 -45.373 0.5 68.35 ? O5 PG4 602 D 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #