data_4RTS # _model_server_result.job_id uqrLLUSkDJWdw64dNdBNjQ _model_server_result.datetime_utc '2024-11-04 23:05:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4RTS # _exptl.entry_id 4RTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RTS _cell.length_a 39.545 _cell.length_b 63.747 _cell.length_c 154.981 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 B N3 DC 2 F DC 2 1_555 C N1 DG 12 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 2 F DC 2 1_555 C O6 DG 12 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 2 F DC 2 1_555 C N2 DG 12 G DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 DT 3 F DT 3 1_555 C N1 DA 11 G DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 DT 3 F DT 3 1_555 C N6 DA 11 G DA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DT 4 F DT 4 1_555 C N1 DA 10 G DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O4 DT 4 F DT 4 1_555 C N6 DA 10 G DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N1 DA 5 F DA 5 1_555 C N3 DT 9 G DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B N6 DA 5 F DA 5 1_555 C O4 DT 9 G DT 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DG 6 F DG 6 1_555 C N3 DC 8 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N2 DG 6 F DG 6 1_555 C O2 DC 8 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O6 DG 6 F DG 6 1_555 C N4 DC 8 G DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DA 7 F DA 7 1_555 C N3 DT 7 G DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N6 DA 7 F DA 7 1_555 C O4 DT 7 G DT 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B N3 DC 8 F DC 8 1_555 C N1 DG 6 G DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N4 DC 8 F DC 8 1_555 C O6 DG 6 G DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O2 DC 8 F DC 8 1_555 C N2 DG 6 G DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DT 9 F DT 9 1_555 C N1 DA 5 G DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B O4 DT 9 F DT 9 1_555 C N6 DA 5 G DA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B N3 DT 10 F DT 10 1_555 C N1 DA 4 G DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B O4 DT 10 F DT 10 1_555 C N6 DA 4 G DA 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N1 DA 11 F DA 11 1_555 C N3 DT 3 G DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N6 DA 11 F DA 11 1_555 C O4 DT 3 G DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N1 DG 12 F DG 12 1_555 C N3 DC 2 G DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N2 DG 12 F DG 12 1_555 C O2 DC 2 G DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B O6 DG 12 F DG 12 1_555 C N4 DC 2 G DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DC MISPAIR' hydrog27 C O2 DT 1 G DT 1 1_555 C N4 DC 2 G DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 426 n n N HN1 SAM sing 427 n n N HN2 SAM sing 428 n n CA C SAM sing 429 n n CA CB SAM sing 430 n n CA HA SAM sing 431 n n C O SAM doub 432 n n C OXT SAM sing 433 n n CB CG SAM sing 434 n n CB HB1 SAM sing 435 n n CB HB2 SAM sing 436 n n CG SD SAM sing 437 n n CG HG1 SAM sing 438 n n CG HG2 SAM sing 439 n n SD CE SAM sing 440 n n SD C5' SAM sing 441 n n CE HE1 SAM sing 442 n n CE HE2 SAM sing 443 n n CE HE3 SAM sing 444 n n C5' C4' SAM sing 445 n n C5' "H5'1" SAM sing 446 n n C5' "H5'2" SAM sing 447 n n C4' O4' SAM sing 448 n n C4' C3' SAM sing 449 n n C4' H4' SAM sing 450 n n O4' C1' SAM sing 451 n n C3' O3' SAM sing 452 n n C3' C2' SAM sing 453 n n C3' H3' SAM sing 454 n n O3' HO3' SAM sing 455 n n C2' O2' SAM sing 456 n n C2' C1' SAM sing 457 n n C2' H2' SAM sing 458 n n O2' HO2' SAM sing 459 n n C1' N9 SAM sing 460 n n C1' H1' SAM sing 461 n n N9 C8 SAM sing 462 n y N9 C4 SAM sing 463 n y C8 N7 SAM doub 464 n y C8 H8 SAM sing 465 n n N7 C5 SAM sing 466 n y C5 C6 SAM sing 467 n y C5 C4 SAM doub 468 n y C6 N6 SAM sing 469 n n C6 N1 SAM doub 470 n y N6 HN61 SAM sing 471 n n N6 HN62 SAM sing 472 n n N1 C2 SAM sing 473 n y C2 N3 SAM doub 474 n y C2 H2 SAM sing 475 n n N3 C4 SAM sing 476 n y # _atom_sites.entry_id 4RTS _atom_sites.fract_transf_matrix[1][1] 0.025288 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015687 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAM A 1 301 301 SAM SAM . E 5 HOH A 1 401 1 HOH HOH . E 5 HOH A 2 402 2 HOH HOH . E 5 HOH A 3 403 3 HOH HOH . E 5 HOH A 4 404 4 HOH HOH . E 5 HOH A 5 405 5 HOH HOH . E 5 HOH A 6 406 6 HOH HOH . E 5 HOH A 7 407 7 HOH HOH . E 5 HOH A 8 408 8 HOH HOH . E 5 HOH A 9 409 9 HOH HOH . E 5 HOH A 10 410 10 HOH HOH . E 5 HOH A 11 411 11 HOH HOH . E 5 HOH A 12 412 12 HOH HOH . E 5 HOH A 13 413 13 HOH HOH . E 5 HOH A 14 414 15 HOH HOH . E 5 HOH A 15 415 16 HOH HOH . E 5 HOH A 16 416 17 HOH HOH . E 5 HOH A 17 417 19 HOH HOH . E 5 HOH A 18 418 20 HOH HOH . E 5 HOH A 19 419 21 HOH HOH . E 5 HOH A 20 420 22 HOH HOH . E 5 HOH A 21 421 23 HOH HOH . E 5 HOH A 22 422 24 HOH HOH . E 5 HOH A 23 423 25 HOH HOH . E 5 HOH A 24 424 26 HOH HOH . E 5 HOH A 25 425 27 HOH HOH . E 5 HOH A 26 426 28 HOH HOH . E 5 HOH A 27 427 30 HOH HOH . E 5 HOH A 28 428 33 HOH HOH . E 5 HOH A 29 429 35 HOH HOH . E 5 HOH A 30 430 36 HOH HOH . E 5 HOH A 31 431 37 HOH HOH . E 5 HOH A 32 432 39 HOH HOH . E 5 HOH A 33 433 40 HOH HOH . E 5 HOH A 34 434 42 HOH HOH . E 5 HOH A 35 435 43 HOH HOH . E 5 HOH A 36 436 44 HOH HOH . E 5 HOH A 37 437 45 HOH HOH . E 5 HOH A 38 438 46 HOH HOH . F 5 HOH F 1 101 14 HOH HOH . G 5 HOH G 1 101 18 HOH HOH . G 5 HOH G 2 102 32 HOH HOH . G 5 HOH G 3 103 38 HOH HOH . G 5 HOH G 4 104 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . D 4 -3.667 -8.367 91.994 1 90.7 ? N SAM 301 A 1 HETATM 2 C CA SAM . . . D 4 -3.997 -7.412 93.045 1 93.6 ? CA SAM 301 A 1 HETATM 3 C C SAM . . . D 4 -3.024 -6.234 93.071 1 93.69 ? C SAM 301 A 1 HETATM 4 O O SAM . . . D 4 -1.822 -6.387 92.848 1 93.72 ? O SAM 301 A 1 HETATM 5 O OXT SAM . . . D 4 -3.423 -5.095 93.314 1 91.74 ? OXT SAM 301 A 1 HETATM 6 C CB SAM . . . D 4 -4.019 -8.116 94.395 1 94.9 ? CB SAM 301 A 1 HETATM 7 C CG SAM . . . D 4 -2.829 -9.045 94.597 1 97.1 ? CG SAM 301 A 1 HETATM 8 S SD SAM . . . D 4 -2.739 -9.757 96.26 1 98.22 ? SD SAM 301 A 1 HETATM 9 C CE SAM . . . D 4 -3.536 -8.469 97.243 1 53.68 ? CE SAM 301 A 1 HETATM 10 C C5' SAM . . . D 4 -0.999 -9.446 96.651 1 58.69 ? C5' SAM 301 A 1 HETATM 11 C C4' SAM . . . D 4 -0.609 -9.965 98.03 1 60.7 ? C4' SAM 301 A 1 HETATM 12 O O4' SAM . . . D 4 0.401 -10.935 97.88 1 59.87 ? O4' SAM 301 A 1 HETATM 13 C C3' SAM . . . D 4 -0.045 -8.882 98.94 1 59.21 ? C3' SAM 301 A 1 HETATM 14 O O3' SAM . . . D 4 -0.863 -8.749 100.076 1 58.05 ? O3' SAM 301 A 1 HETATM 15 C C2' SAM . . . D 4 1.322 -9.37 99.374 1 56.27 ? C2' SAM 301 A 1 HETATM 16 O O2' SAM . . . D 4 1.432 -9.308 100.776 1 55.73 ? O2' SAM 301 A 1 HETATM 17 C C1' SAM . . . D 4 1.368 -10.812 98.901 1 56.66 ? C1' SAM 301 A 1 HETATM 18 N N9 SAM . . . D 4 2.675 -11.174 98.338 1 48.53 ? N9 SAM 301 A 1 HETATM 19 C C8 SAM . . . D 4 3.548 -10.361 97.665 1 36.94 ? C8 SAM 301 A 1 HETATM 20 N N7 SAM . . . D 4 4.619 -11.111 97.314 1 42.09 ? N7 SAM 301 A 1 HETATM 21 C C5 SAM . . . D 4 4.448 -12.38 97.753 1 46.89 ? C5 SAM 301 A 1 HETATM 22 C C6 SAM . . . D 4 5.227 -13.534 97.667 1 48.16 ? C6 SAM 301 A 1 HETATM 23 N N6 SAM . . . D 4 6.409 -13.521 97.056 1 46.78 ? N6 SAM 301 A 1 HETATM 24 N N1 SAM . . . D 4 4.769 -14.709 98.219 1 46.69 ? N1 SAM 301 A 1 HETATM 25 C C2 SAM . . . D 4 3.547 -14.731 98.852 1 46.57 ? C2 SAM 301 A 1 HETATM 26 N N3 SAM . . . D 4 2.779 -13.586 98.939 1 41.73 ? N3 SAM 301 A 1 HETATM 27 C C4 SAM . . . D 4 3.223 -12.428 98.398 1 46.24 ? C4 SAM 301 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #