data_4RV7 # _model_server_result.job_id MVraQ4-dHLd7ABIFA3-9SA _model_server_result.datetime_utc '2025-02-27 07:03:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1001}' # _entry.id 4RV7 # _exptl.entry_id 4RV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RV7 _cell.length_a 130.68 _cell.length_b 130.68 _cell.length_c 178.15 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,N 1 1 B,H,I 2 1 C,J,K 3 1 D,L,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 H N N ? 2 J N N ? 2 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 143 A GLU 124 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc2 E O2A ATP . A ATP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc3 E O1B ATP . A ATP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 B OE2 GLU 143 B GLU 124 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc5 H O1B ATP . B ATP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 H O2A ATP . B ATP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc7 C OE2 GLU 143 C GLU 124 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 J O2A ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 J O1B ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc10 J O3G ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc11 D OE2 GLU 143 D GLU 124 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 L O2A ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc13 L O1B ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc14 L O3G ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 4RV7 _atom_sites.fract_transf_matrix[1][1] 0.007652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 1001 1001 ATP ATP . F 3 MG A 1 1002 1 MG MG . G 4 HEZ A 1 1003 1 HEZ HEZ . H 2 ATP B 1 1001 1001 ATP ATP . I 3 MG B 1 1002 1 MG MG . J 2 ATP C 1 1001 1001 ATP ATP . K 3 MG C 1 1002 1 MG MG . L 2 ATP D 1 1001 1001 ATP ATP . M 3 MG D 1 1002 1 MG MG . N 5 HOH A 1 1101 1 HOH HOH . N 5 HOH A 2 1102 2 HOH HOH . N 5 HOH A 3 1103 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 2 -19.324 -64.553 -2.166 0.75 87.5 ? PG ATP 1001 A 1 HETATM 2 O O1G ATP . . . E 2 -20.15 -63.644 -1.288 0.75 89.12 ? O1G ATP 1001 A 1 HETATM 3 O O2G ATP . . . E 2 -17.847 -64.252 -2.149 0.75 84.91 ? O2G ATP 1001 A 1 HETATM 4 O O3G ATP . . . E 2 -19.905 -64.795 -3.537 0.75 89.32 ? O3G ATP 1001 A 1 HETATM 5 P PB ATP . . . E 2 -20.873 -66.461 -0.923 0.75 99.35 ? PB ATP 1001 A 1 HETATM 6 O O1B ATP . . . E 2 -21.921 -66.085 -1.943 0.75 103.49 ? O1B ATP 1001 A 1 HETATM 7 O O2B ATP . . . E 2 -20.989 -65.958 0.496 0.75 97.07 ? O2B ATP 1001 A 1 HETATM 8 O O3B ATP . . . E 2 -19.437 -65.991 -1.461 0.75 292.88 ? O3B ATP 1001 A 1 HETATM 9 P PA ATP . . . E 2 -20.394 -68.939 -2.173 0.75 95.06 ? PA ATP 1001 A 1 HETATM 10 O O1A ATP . . . E 2 -21.005 -70.31 -2.017 0.75 95.07 ? O1A ATP 1001 A 1 HETATM 11 O O2A ATP . . . E 2 -20.675 -68.154 -3.434 0.75 96.7 ? O2A ATP 1001 A 1 HETATM 12 O O3A ATP . . . E 2 -20.762 -68.067 -0.874 0.75 141.65 ? O3A ATP 1001 A 1 HETATM 13 O O5' ATP . . . E 2 -18.809 -69.102 -1.964 0.75 87.49 ? O5' ATP 1001 A 1 HETATM 14 C C5' ATP . . . E 2 -18.01 -69.821 -2.894 0.75 86.67 ? C5' ATP 1001 A 1 HETATM 15 C C4' ATP . . . E 2 -16.627 -70.017 -2.287 0.75 84.45 ? C4' ATP 1001 A 1 HETATM 16 O O4' ATP . . . E 2 -16.686 -70.04 -0.857 0.75 82.57 ? O4' ATP 1001 A 1 HETATM 17 C C3' ATP . . . E 2 -16.019 -71.338 -2.719 0.75 84.96 ? C3' ATP 1001 A 1 HETATM 18 O O3' ATP . . . E 2 -15.109 -71.135 -3.803 0.75 86.72 ? O3' ATP 1001 A 1 HETATM 19 C C2' ATP . . . E 2 -15.294 -71.856 -1.492 0.75 81.89 ? C2' ATP 1001 A 1 HETATM 20 O O2' ATP . . . E 2 -13.882 -71.748 -1.682 0.75 80.46 ? O2' ATP 1001 A 1 HETATM 21 C C1' ATP . . . E 2 -15.725 -70.964 -0.338 0.75 80.2 ? C1' ATP 1001 A 1 HETATM 22 N N9 ATP . . . E 2 -16.339 -71.82 0.708 0.75 78.93 ? N9 ATP 1001 A 1 HETATM 23 C C8 ATP . . . E 2 -17.622 -72.22 0.726 0.75 80.19 ? C8 ATP 1001 A 1 HETATM 24 N N7 ATP . . . E 2 -17.88 -72.998 1.808 0.75 80.51 ? N7 ATP 1001 A 1 HETATM 25 C C5 ATP . . . E 2 -16.737 -73.111 2.507 0.75 77.89 ? C5 ATP 1001 A 1 HETATM 26 C C6 ATP . . . E 2 -16.313 -73.796 3.752 0.75 76.61 ? C6 ATP 1001 A 1 HETATM 27 N N6 ATP . . . E 2 -17.187 -74.532 4.483 0.75 77.51 ? N6 ATP 1001 A 1 HETATM 28 N N1 ATP . . . E 2 -15.023 -73.659 4.131 0.75 75.23 ? N1 ATP 1001 A 1 HETATM 29 C C2 ATP . . . E 2 -14.147 -72.93 3.414 0.75 75.72 ? C2 ATP 1001 A 1 HETATM 30 N N3 ATP . . . E 2 -14.465 -72.285 2.277 0.75 76.02 ? N3 ATP 1001 A 1 HETATM 31 C C4 ATP . . . E 2 -15.722 -72.335 1.777 0.75 76.85 ? C4 ATP 1001 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #