data_4RV7
#
_model_server_result.job_id            NSEBc_nS6_t4ot1sDxk0Tw 
_model_server_result.datetime_utc      '2025-02-27 06:49:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rv7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1001}' 
#
_entry.id    4RV7 
#
_exptl.entry_id    4RV7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RV7 
_cell.length_a            130.68 
_cell.length_b            130.68 
_cell.length_c            178.15 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RV7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,N 1 1 
B,H,I 2 1 
C,J,K 3 1 
D,L,M 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 H N N 
? 2 J N N 
? 2 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE2 GLU 143 A GLU 124 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? 
metalc ? metalc2 E O2A ATP . A ATP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc3 E O1B ATP . A ATP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? 
metalc ? metalc4 B OE2 GLU 143 B GLU 124 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? 
metalc ? metalc5 H O1B ATP . B ATP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? 
metalc ? metalc6 H O2A ATP . B ATP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? 
metalc ? metalc7 C OE2 GLU 143 C GLU 124 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc8 J O2A ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc9 J O1B ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc10 J O3G ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? 
metalc ? metalc11 D OE2 GLU 143 D GLU 124 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc12 L O2A ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
metalc ? metalc13 L O1B ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc14 L O3G ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     4RV7 
_atom_sites.fract_transf_matrix[1][1]    0.007652 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007652 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005613 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATP A 1 1001 1001 ATP ATP . 
F 3 MG A 1 1002 1 MG MG . 
G 4 HEZ A 1 1003 1 HEZ HEZ . 
H 2 ATP B 1 1001 1001 ATP ATP . 
I 3 MG B 1 1002 1 MG MG . 
J 2 ATP C 1 1001 1001 ATP ATP . 
K 3 MG C 1 1002 1 MG MG . 
L 2 ATP D 1 1001 1001 ATP ATP . 
M 3 MG D 1 1002 1 MG MG . 
N 5 HOH A 1 1101 1 HOH HOH . 
N 5 HOH A 2 1102 2 HOH HOH . 
N 5 HOH A 3 1103 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 2 -20.425 -96.398 9.602 0.75 101.97 ? PG ATP 1001 C 1 
HETATM 2 O O1G ATP . . . J 2 -19.438 -97.378 10.191 0.75 103.2 ? O1G ATP 1001 C 1 
HETATM 3 O O2G ATP . . . J 2 -19.79 -95.162 9.015 0.75 101.6 ? O2G ATP 1001 C 1 
HETATM 4 O O3G ATP . . . J 2 -21.646 -96.142 10.452 0.75 102.04 ? O3G ATP 1001 C 1 
HETATM 5 P PB ATP . . . J 2 -21.233 -98.753 8.381 0.75 135.3 ? PB ATP 1001 C 1 
HETATM 6 O O1B ATP . . . J 2 -21.631 -99.139 9.785 0.75 135.82 ? O1B ATP 1001 C 1 
HETATM 7 O O2B ATP . . . J 2 -20.024 -99.393 7.742 0.75 136.02 ? O2B ATP 1001 C 1 
HETATM 8 O O3B ATP . . . J 2 -21.013 -97.163 8.317 0.75 301.68 ? O3B ATP 1001 C 1 
HETATM 9 P PA ATP . . . J 2 -23.901 -98.246 7.691 0.75 109.86 ? PA ATP 1001 C 1 
HETATM 10 O O1A ATP . . . J 2 -24.994 -99.118 7.122 0.75 108.79 ? O1A ATP 1001 C 1 
HETATM 11 O O2A ATP . . . J 2 -23.971 -97.845 9.144 0.75 110.21 ? O2A ATP 1001 C 1 
HETATM 12 O O3A ATP . . . J 2 -22.494 -98.984 7.41 0.75 196.44 ? O3A ATP 1001 C 1 
HETATM 13 O O5' ATP . . . J 2 -23.798 -96.916 6.785 0.75 87.92 ? O5' ATP 1001 C 1 
HETATM 14 C C5' ATP . . . J 2 -24.934 -96.456 6.053 0.75 88.13 ? C5' ATP 1001 C 1 
HETATM 15 C C4' ATP . . . J 2 -24.571 -95.274 5.159 0.75 89.43 ? C4' ATP 1001 C 1 
HETATM 16 O O4' ATP . . . J 2 -23.605 -95.658 4.176 0.75 89.59 ? O4' ATP 1001 C 1 
HETATM 17 C C3' ATP . . . J 2 -25.795 -94.761 4.416 0.75 90.4 ? C3' ATP 1001 C 1 
HETATM 18 O O3' ATP . . . J 2 -26.186 -93.482 4.924 0.75 92.64 ? O3' ATP 1001 C 1 
HETATM 19 C C2' ATP . . . J 2 -25.385 -94.649 2.961 0.75 88.99 ? C2' ATP 1001 C 1 
HETATM 20 O O2' ATP . . . J 2 -25.351 -93.274 2.565 0.75 88.51 ? O2' ATP 1001 C 1 
HETATM 21 C C1' ATP . . . J 2 -23.996 -95.258 2.859 0.75 87.85 ? C1' ATP 1001 C 1 
HETATM 22 N N9 ATP . . . J 2 -24.064 -96.479 2.02 0.75 86.73 ? N9 ATP 1001 C 1 
HETATM 23 C C8 ATP . . . J 2 -24.268 -97.717 2.503 0.75 86.9 ? C8 ATP 1001 C 1 
HETATM 24 N N7 ATP . . . J 2 -24.282 -98.64 1.509 0.75 87.32 ? N7 ATP 1001 C 1 
HETATM 25 C C5 ATP . . . J 2 -24.084 -97.986 0.35 0.75 87.09 ? C5 ATP 1001 C 1 
HETATM 26 C C6 ATP . . . J 2 -23.988 -98.367 -1.079 0.75 87.81 ? C6 ATP 1001 C 1 
HETATM 27 N N6 ATP . . . J 2 -24.11 -99.659 -1.472 0.75 88.72 ? N6 ATP 1001 C 1 
HETATM 28 N N1 ATP . . . J 2 -23.775 -97.378 -1.976 0.75 87.97 ? N1 ATP 1001 C 1 
HETATM 29 C C2 ATP . . . J 2 -23.653 -96.092 -1.596 0.75 87.42 ? C2 ATP 1001 C 1 
HETATM 30 N N3 ATP . . . J 2 -23.729 -95.679 -0.317 0.75 86.63 ? N3 ATP 1001 C 1 
HETATM 31 C C4 ATP . . . J 2 -23.94 -96.561 0.69 0.75 86.47 ? C4 ATP 1001 C 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           543 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#