data_4RV7 # _model_server_result.job_id Hk2zDoPg5seQn-Dz-BQXrw _model_server_result.datetime_utc '2025-02-27 07:25:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1003}' # _entry.id 4RV7 # _exptl.entry_id 4RV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEXANE-1,6-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RV7 _cell.length_a 130.68 _cell.length_b 130.68 _cell.length_c 178.15 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,G,N 1 1 B,H,I 2 1 C,J,K 3 1 D,L,M 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 143 A GLU 124 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? metalc ? metalc2 E O2A ATP . A ATP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc3 E O1B ATP . A ATP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc4 B OE2 GLU 143 B GLU 124 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc5 H O1B ATP . B ATP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc6 H O2A ATP . B ATP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.938 ? metalc ? metalc7 C OE2 GLU 143 C GLU 124 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc8 J O2A ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc9 J O1B ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc10 J O3G ATP . C ATP 1001 1_555 K MG MG . C MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.489 ? metalc ? metalc11 D OE2 GLU 143 D GLU 124 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc12 L O2A ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc13 L O1B ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc14 L O3G ATP . D ATP 1001 1_555 M MG MG . D MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.906 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id HEZ _chem_comp.mon_nstd_flag . _chem_comp.name HEXANE-1,6-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 HEZ sing 165 n n O1 HO1 HEZ sing 166 n n C1 C2 HEZ sing 167 n n C1 H11 HEZ sing 168 n n C1 H12 HEZ sing 169 n n C2 C3 HEZ sing 170 n n C2 H21 HEZ sing 171 n n C2 H22 HEZ sing 172 n n C3 C4 HEZ sing 173 n n C3 H31 HEZ sing 174 n n C3 H32 HEZ sing 175 n n C4 C5 HEZ sing 176 n n C4 H41 HEZ sing 177 n n C4 H42 HEZ sing 178 n n C5 C6 HEZ sing 179 n n C5 H51 HEZ sing 180 n n C5 H52 HEZ sing 181 n n C6 O6 HEZ sing 182 n n C6 H61 HEZ sing 183 n n C6 H62 HEZ sing 184 n n O6 HO6 HEZ sing 185 n n # _atom_sites.entry_id 4RV7 _atom_sites.fract_transf_matrix[1][1] 0.007652 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005613 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 1001 1001 ATP ATP . F 3 MG A 1 1002 1 MG MG . G 4 HEZ A 1 1003 1 HEZ HEZ . H 2 ATP B 1 1001 1001 ATP ATP . I 3 MG B 1 1002 1 MG MG . J 2 ATP C 1 1001 1001 ATP ATP . K 3 MG C 1 1002 1 MG MG . L 2 ATP D 1 1001 1001 ATP ATP . M 3 MG D 1 1002 1 MG MG . N 5 HOH A 1 1101 1 HOH HOH . N 5 HOH A 2 1102 2 HOH HOH . N 5 HOH A 3 1103 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 HEZ . . . G 4 -4.921 -62.045 20.926 1 92.76 ? O1 HEZ 1003 A 1 HETATM 2 C C1 HEZ . . . G 4 -3.977 -62.746 20.149 1 93.18 ? C1 HEZ 1003 A 1 HETATM 3 C C2 HEZ . . . G 4 -4.221 -62.421 18.691 1 93.46 ? C2 HEZ 1003 A 1 HETATM 4 C C3 HEZ . . . G 4 -2.983 -61.883 18.005 1 93.16 ? C3 HEZ 1003 A 1 HETATM 5 C C4 HEZ . . . G 4 -2.771 -62.515 16.647 1 91.84 ? C4 HEZ 1003 A 1 HETATM 6 C C5 HEZ . . . G 4 -2.732 -64.023 16.742 1 91.73 ? C5 HEZ 1003 A 1 HETATM 7 C C6 HEZ . . . G 4 -3.127 -64.694 15.447 1 91.47 ? C6 HEZ 1003 A 1 HETATM 8 O O6 HEZ . . . G 4 -3.42 -66.043 15.727 1 90.76 ? O6 HEZ 1003 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 820 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #