data_4RVD
#
_model_server_result.job_id            PfDDPjXl7v1fWxa9S1Wxfg 
_model_server_result.datetime_utc      '2024-11-04 22:43:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    4RVD 
#
_exptl.entry_id    4RVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4RVD 
_cell.length_a            134.767 
_cell.length_b            134.767 
_cell.length_c            129.705 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C CYS 348 A CYS 348 1_555 A N CSO 349 A CSO 349 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C CSO 349 A CSO 349 1_555 A N ASP 350 A ASP 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
metalc ? metalc1 A SG CYS 13 A CYS 13 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc2 A SG CYS 59 A CYS 59 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 A SG CYS 56 A CYS 56 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? 
metalc ? metalc4 A SG CYS 16 A CYS 16 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4RVD 
_atom_sites.fract_transf_matrix[1][1]    0.00742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00742 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00771 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 501 500 ZN ZN . 
C 3 SAM A 1 502 601 SAM SAM . 
D 4 ACT A 1 503 603 ACT ACT . 
E 5 HOH A 1 601 1 HOH HOH . 
E 5 HOH A 2 602 2 HOH HOH . 
E 5 HOH A 3 603 3 HOH HOH . 
E 5 HOH A 4 604 4 HOH HOH . 
E 5 HOH A 5 605 5 HOH HOH . 
E 5 HOH A 6 606 6 HOH HOH . 
E 5 HOH A 7 607 7 HOH HOH . 
E 5 HOH A 8 608 8 HOH HOH . 
E 5 HOH A 9 609 10 HOH HOH . 
E 5 HOH A 10 610 11 HOH HOH . 
E 5 HOH A 11 611 12 HOH HOH . 
E 5 HOH A 12 612 14 HOH HOH . 
E 5 HOH A 13 613 15 HOH HOH . 
E 5 HOH A 14 614 16 HOH HOH . 
E 5 HOH A 15 615 17 HOH HOH . 
E 5 HOH A 16 616 18 HOH HOH . 
E 5 HOH A 17 617 19 HOH HOH . 
E 5 HOH A 18 618 21 HOH HOH . 
E 5 HOH A 19 619 22 HOH HOH . 
E 5 HOH A 20 620 23 HOH HOH . 
E 5 HOH A 21 621 24 HOH HOH . 
E 5 HOH A 22 622 26 HOH HOH . 
E 5 HOH A 23 623 27 HOH HOH . 
E 5 HOH A 24 624 29 HOH HOH . 
E 5 HOH A 25 625 30 HOH HOH . 
E 5 HOH A 26 626 31 HOH HOH . 
E 5 HOH A 27 627 32 HOH HOH . 
E 5 HOH A 28 628 33 HOH HOH . 
E 5 HOH A 29 629 34 HOH HOH . 
E 5 HOH A 30 630 35 HOH HOH . 
E 5 HOH A 31 631 37 HOH HOH . 
E 5 HOH A 32 632 38 HOH HOH . 
E 5 HOH A 33 633 39 HOH HOH . 
E 5 HOH A 34 634 42 HOH HOH . 
E 5 HOH A 35 635 43 HOH HOH . 
E 5 HOH A 36 636 44 HOH HOH . 
E 5 HOH A 37 637 54 HOH HOH . 
E 5 HOH A 38 638 56 HOH HOH . 
E 5 HOH A 39 639 57 HOH HOH . 
E 5 HOH A 40 640 58 HOH HOH . 
E 5 HOH A 41 641 60 HOH HOH . 
E 5 HOH A 42 642 62 HOH HOH . 
E 5 HOH A 43 643 65 HOH HOH . 
E 5 HOH A 44 644 66 HOH HOH . 
E 5 HOH A 45 645 67 HOH HOH . 
E 5 HOH A 46 646 68 HOH HOH . 
E 5 HOH A 47 647 71 HOH HOH . 
E 5 HOH A 48 648 75 HOH HOH . 
E 5 HOH A 49 649 76 HOH HOH . 
E 5 HOH A 50 650 84 HOH HOH . 
E 5 HOH A 51 651 91 HOH HOH . 
E 5 HOH A 52 652 92 HOH HOH . 
E 5 HOH A 53 653 93 HOH HOH . 
E 5 HOH A 54 654 117 HOH HOH . 
E 5 HOH A 55 655 121 HOH HOH . 
E 5 HOH A 56 656 122 HOH HOH . 
E 5 HOH A 57 657 123 HOH HOH . 
E 5 HOH A 58 658 125 HOH HOH . 
E 5 HOH A 59 659 126 HOH HOH . 
E 5 HOH A 60 660 127 HOH HOH . 
E 5 HOH A 61 661 128 HOH HOH . 
E 5 HOH A 62 662 129 HOH HOH . 
E 5 HOH A 63 663 130 HOH HOH . 
E 5 HOH A 64 664 131 HOH HOH . 
E 5 HOH A 65 665 132 HOH HOH . 
E 5 HOH A 66 666 133 HOH HOH . 
E 5 HOH A 67 667 134 HOH HOH . 
E 5 HOH A 68 668 135 HOH HOH . 
E 5 HOH A 69 669 136 HOH HOH . 
E 5 HOH A 70 670 137 HOH HOH . 
E 5 HOH A 71 671 138 HOH HOH . 
E 5 HOH A 72 672 139 HOH HOH . 
E 5 HOH A 73 673 140 HOH HOH . 
E 5 HOH A 74 674 141 HOH HOH . 
E 5 HOH A 75 675 142 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         B 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -44.877 
_atom_site.Cartn_y               -8.567 
_atom_site.Cartn_z               18.396 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        54.36 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           501 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#