data_4RVK # _model_server_result.job_id 9AjM7CkhjPgpnPj6qsC7RQ _model_server_result.datetime_utc '2025-03-07 02:07:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rvk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4RVK # _exptl.entry_id 4RVK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 327.339 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N-[3-(6-cyano-9H-pyrrolo[2,3-b:5,4-c']dipyridin-3-yl)phenyl]acetamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.92 _cell.angle_gamma 90 _cell.entry_id 4RVK _cell.length_a 44.989 _cell.length_b 65.906 _cell.length_c 57.875 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RVK _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H13 N5 O' _chem_comp.formula_weight 327.339 _chem_comp.id 3XK _chem_comp.mon_nstd_flag . _chem_comp.name "N-[3-(6-cyano-9H-pyrrolo[2,3-b:5,4-c']dipyridin-3-yl)phenyl]acetamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C19 3XK trip 1 n n C19 C9 3XK sing 2 n n C9 C10 3XK doub 3 n y C9 N3 3XK sing 4 n y C10 C7 3XK sing 5 n y N3 C8 3XK doub 6 n y C7 C6 3XK doub 7 n y C7 C4 3XK sing 8 n y C8 C6 3XK sing 9 n y C12 C13 3XK doub 10 n y C12 C11 3XK sing 11 n y C13 C14 3XK sing 12 n y C6 N2 3XK sing 13 n y C5 C4 3XK doub 14 n y C5 C1 3XK sing 15 n y C4 C3 3XK sing 16 n y C14 C15 3XK doub 17 n y C11 C1 3XK sing 18 n n C11 C16 3XK doub 19 n y C1 C2 3XK doub 20 n y N2 C3 3XK sing 21 n y C3 N1 3XK doub 22 n y C2 N1 3XK sing 23 n y C16 C15 3XK sing 24 n y C15 N4 3XK sing 25 n n N4 C17 3XK sing 26 n n C17 O1 3XK doub 27 n n C17 C18 3XK sing 28 n n C2 H1 3XK sing 29 n n N2 H2 3XK sing 30 n n C10 H3 3XK sing 31 n n C8 H4 3XK sing 32 n n C5 H5 3XK sing 33 n n C16 H6 3XK sing 34 n n N4 H7 3XK sing 35 n n C18 H8 3XK sing 36 n n C18 H9 3XK sing 37 n n C18 H10 3XK sing 38 n n C14 H11 3XK sing 39 n n C13 H12 3XK sing 40 n n C12 H13 3XK sing 41 n n # _atom_sites.entry_id 4RVK _atom_sites.fract_transf_matrix[1][1] 0.022228 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001525 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015173 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017319 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3XK A 1 301 1 3XK 3XK . C 3 HOH A 1 401 1 HOH WAT . C 3 HOH A 2 402 2 HOH WAT . C 3 HOH A 3 403 3 HOH WAT . C 3 HOH A 4 404 4 HOH WAT . C 3 HOH A 5 405 5 HOH WAT . C 3 HOH A 6 406 6 HOH WAT . C 3 HOH A 7 407 7 HOH WAT . C 3 HOH A 8 408 8 HOH WAT . C 3 HOH A 9 409 9 HOH WAT . C 3 HOH A 10 410 10 HOH WAT . C 3 HOH A 11 411 11 HOH WAT . C 3 HOH A 12 412 12 HOH WAT . C 3 HOH A 13 413 13 HOH WAT . C 3 HOH A 14 414 14 HOH WAT . C 3 HOH A 15 415 15 HOH WAT . C 3 HOH A 16 416 16 HOH WAT . C 3 HOH A 17 417 17 HOH WAT . C 3 HOH A 18 418 18 HOH WAT . C 3 HOH A 19 419 19 HOH WAT . C 3 HOH A 20 420 20 HOH WAT . C 3 HOH A 21 421 21 HOH WAT . C 3 HOH A 22 422 22 HOH WAT . C 3 HOH A 23 423 23 HOH WAT . C 3 HOH A 24 424 24 HOH WAT . C 3 HOH A 25 425 25 HOH WAT . C 3 HOH A 26 426 26 HOH WAT . C 3 HOH A 27 427 27 HOH WAT . C 3 HOH A 28 428 28 HOH WAT . C 3 HOH A 29 429 29 HOH WAT . C 3 HOH A 30 430 30 HOH WAT . C 3 HOH A 31 431 31 HOH WAT . C 3 HOH A 32 432 32 HOH WAT . C 3 HOH A 33 433 33 HOH WAT . C 3 HOH A 34 434 34 HOH WAT . C 3 HOH A 35 435 35 HOH WAT . C 3 HOH A 36 436 36 HOH WAT . C 3 HOH A 37 437 37 HOH WAT . C 3 HOH A 38 438 38 HOH WAT . C 3 HOH A 39 439 39 HOH WAT . C 3 HOH A 40 440 40 HOH WAT . C 3 HOH A 41 441 41 HOH WAT . C 3 HOH A 42 442 42 HOH WAT . C 3 HOH A 43 443 43 HOH WAT . C 3 HOH A 44 444 44 HOH WAT . C 3 HOH A 45 445 45 HOH WAT . C 3 HOH A 46 446 46 HOH WAT . C 3 HOH A 47 447 47 HOH WAT . C 3 HOH A 48 448 48 HOH WAT . C 3 HOH A 49 449 49 HOH WAT . C 3 HOH A 50 450 50 HOH WAT . C 3 HOH A 51 451 51 HOH WAT . C 3 HOH A 52 452 52 HOH WAT . C 3 HOH A 53 453 53 HOH WAT . C 3 HOH A 54 454 54 HOH WAT . C 3 HOH A 55 455 55 HOH WAT . C 3 HOH A 56 456 56 HOH WAT . C 3 HOH A 57 457 57 HOH WAT . C 3 HOH A 58 458 58 HOH WAT . C 3 HOH A 59 459 59 HOH WAT . C 3 HOH A 60 460 60 HOH WAT . C 3 HOH A 61 461 61 HOH WAT . C 3 HOH A 62 462 62 HOH WAT . C 3 HOH A 63 463 63 HOH WAT . C 3 HOH A 64 464 64 HOH WAT . C 3 HOH A 65 465 65 HOH WAT . C 3 HOH A 66 466 66 HOH WAT . C 3 HOH A 67 467 67 HOH WAT . C 3 HOH A 68 468 68 HOH WAT . C 3 HOH A 69 469 69 HOH WAT . C 3 HOH A 70 470 70 HOH WAT . C 3 HOH A 71 471 71 HOH WAT . C 3 HOH A 72 472 72 HOH WAT . C 3 HOH A 73 473 73 HOH WAT . C 3 HOH A 74 474 74 HOH WAT . C 3 HOH A 75 475 75 HOH WAT . C 3 HOH A 76 476 76 HOH WAT . C 3 HOH A 77 477 77 HOH WAT . C 3 HOH A 78 478 78 HOH WAT . C 3 HOH A 79 479 79 HOH WAT . C 3 HOH A 80 480 80 HOH WAT . C 3 HOH A 81 481 81 HOH WAT . C 3 HOH A 82 482 82 HOH WAT . C 3 HOH A 83 483 83 HOH WAT . C 3 HOH A 84 484 84 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 3XK . . . B 2 6.179 8.466 18.043 1 24.95 ? C7 3XK 301 A 1 HETATM 2 C C9 3XK . . . B 2 8.077 7.593 16.823 1 25.03 ? C9 3XK 301 A 1 HETATM 3 N N1 3XK . . . B 2 3.953 10.323 20.022 1 24.84 ? N1 3XK 301 A 1 HETATM 4 C C2 3XK . . . B 2 2.773 9.678 19.959 1 24.55 ? C2 3XK 301 A 1 HETATM 5 N N2 3XK . . . B 2 6.249 10.31 19.299 1 25.46 ? N2 3XK 301 A 1 HETATM 6 C C10 3XK . . . B 2 6.712 7.503 17.175 1 27 ? C10 3XK 301 A 1 HETATM 7 C C4 3XK . . . B 2 4.919 8.654 18.601 1 25.54 ? C4 3XK 301 A 1 HETATM 8 N N3 3XK . . . B 2 8.803 8.634 17.268 1 25.01 ? N3 3XK 301 A 1 HETATM 9 N N5 3XK . . . B 2 9.168 6.131 15.147 1 24.84 ? N5 3XK 301 A 1 HETATM 10 C C6 3XK . . . B 2 6.994 9.502 18.502 1 24.91 ? C6 3XK 301 A 1 HETATM 11 C C19 3XK . . . B 2 8.662 6.775 15.994 1 26.41 ? C19 3XK 301 A 1 HETATM 12 C C8 3XK . . . B 2 8.299 9.568 18.076 1 24.66 ? C8 3XK 301 A 1 HETATM 13 C C3 3XK . . . B 2 4.989 9.805 19.352 1 24.51 ? C3 3XK 301 A 1 HETATM 14 C C5 3XK . . . B 2 3.702 7.972 18.508 1 24.06 ? C5 3XK 301 A 1 HETATM 15 C C1 3XK . . . B 2 2.607 8.505 19.221 1 25.71 ? C1 3XK 301 A 1 HETATM 16 C C11 3XK . . . B 2 1.236 7.904 19.18 1 26.49 ? C11 3XK 301 A 1 HETATM 17 C C16 3XK . . . B 2 0.313 8.209 20.196 1 29.37 ? C16 3XK 301 A 1 HETATM 18 C C15 3XK . . . B 2 -0.982 7.692 20.208 1 30.21 ? C15 3XK 301 A 1 HETATM 19 N N4 3XK . . . B 2 -1.891 7.977 21.249 1 32.07 ? N4 3XK 301 A 1 HETATM 20 C C17 3XK . . . B 2 -1.712 8.695 22.376 1 34.05 ? C17 3XK 301 A 1 HETATM 21 O O1 3XK . . . B 2 -0.676 9.224 22.746 1 31.97 ? O1 3XK 301 A 1 HETATM 22 C C18 3XK . . . B 2 -2.933 8.809 23.235 1 36.83 ? C18 3XK 301 A 1 HETATM 23 C C14 3XK . . . B 2 -1.396 6.894 19.142 1 31.61 ? C14 3XK 301 A 1 HETATM 24 C C13 3XK . . . B 2 -0.501 6.61 18.096 1 30.59 ? C13 3XK 301 A 1 HETATM 25 C C12 3XK . . . B 2 0.806 7.128 18.096 1 24.88 ? C12 3XK 301 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 1087 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #