data_4RVL # _model_server_result.job_id 0GCtglWGCixIDoApdWHySg _model_server_result.datetime_utc '2025-03-07 07:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4RVL # _exptl.entry_id 4RVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 286.288 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-(2-hydroxyphenyl)-9H-pyrrolo[2,3-b:5,4-c']dipyridine-6-carbonitrile" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.03 _cell.angle_gamma 90 _cell.entry_id 4RVL _cell.length_a 44.902 _cell.length_b 65.73 _cell.length_c 57.787 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H10 N4 O' _chem_comp.formula_weight 286.288 _chem_comp.id 3XL _chem_comp.mon_nstd_flag . _chem_comp.name "3-(2-hydroxyphenyl)-9H-pyrrolo[2,3-b:5,4-c']dipyridine-6-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N4 C17 3XL trip 1 n n C17 C9 3XL sing 2 n n C9 C10 3XL doub 3 n y C9 N3 3XL sing 4 n y O1 C12 3XL sing 5 n n C10 C7 3XL sing 6 n y N3 C8 3XL doub 7 n y C7 C6 3XL doub 8 n y C7 C4 3XL sing 9 n y C13 C12 3XL doub 10 n y C13 C14 3XL sing 11 n y C8 C6 3XL sing 12 n y C12 C11 3XL sing 13 n y C6 N2 3XL sing 14 n y C5 C4 3XL doub 15 n y C5 C1 3XL sing 16 n y C4 C3 3XL sing 17 n y C14 C15 3XL doub 18 n y C11 C1 3XL sing 19 n n C11 C16 3XL doub 20 n y C1 C2 3XL doub 21 n y N2 C3 3XL sing 22 n y C3 N1 3XL doub 23 n y C2 N1 3XL sing 24 n y C15 C16 3XL sing 25 n y C8 H1 3XL sing 26 n n N2 H2 3XL sing 27 n n C2 H3 3XL sing 28 n n C10 H4 3XL sing 29 n n C5 H5 3XL sing 30 n n C16 H6 3XL sing 31 n n C15 H7 3XL sing 32 n n C14 H8 3XL sing 33 n n C13 H9 3XL sing 34 n n O1 H10 3XL sing 35 n n # _atom_sites.entry_id 4RVL _atom_sites.fract_transf_matrix[1][1] 0.022271 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015214 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017348 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3XL A 1 301 1 3XL ZZZ . C 3 HOH A 1 401 1 HOH WAT . C 3 HOH A 2 402 2 HOH WAT . C 3 HOH A 3 403 3 HOH WAT . C 3 HOH A 4 404 4 HOH WAT . C 3 HOH A 5 405 5 HOH WAT . C 3 HOH A 6 406 6 HOH WAT . C 3 HOH A 7 407 7 HOH WAT . C 3 HOH A 8 408 8 HOH WAT . C 3 HOH A 9 409 9 HOH WAT . C 3 HOH A 10 410 10 HOH WAT . C 3 HOH A 11 411 11 HOH WAT . C 3 HOH A 12 412 12 HOH WAT . C 3 HOH A 13 413 13 HOH WAT . C 3 HOH A 14 414 14 HOH WAT . C 3 HOH A 15 415 15 HOH WAT . C 3 HOH A 16 416 16 HOH WAT . C 3 HOH A 17 417 17 HOH WAT . C 3 HOH A 18 418 18 HOH WAT . C 3 HOH A 19 419 19 HOH WAT . C 3 HOH A 20 420 20 HOH WAT . C 3 HOH A 21 421 21 HOH WAT . C 3 HOH A 22 422 22 HOH WAT . C 3 HOH A 23 423 23 HOH WAT . C 3 HOH A 24 424 24 HOH WAT . C 3 HOH A 25 425 25 HOH WAT . C 3 HOH A 26 426 26 HOH WAT . C 3 HOH A 27 427 27 HOH WAT . C 3 HOH A 28 428 28 HOH WAT . C 3 HOH A 29 429 29 HOH WAT . C 3 HOH A 30 430 30 HOH WAT . C 3 HOH A 31 431 31 HOH WAT . C 3 HOH A 32 432 32 HOH WAT . C 3 HOH A 33 433 33 HOH WAT . C 3 HOH A 34 434 34 HOH WAT . C 3 HOH A 35 435 35 HOH WAT . C 3 HOH A 36 436 36 HOH WAT . C 3 HOH A 37 437 37 HOH WAT . C 3 HOH A 38 438 38 HOH WAT . C 3 HOH A 39 439 39 HOH WAT . C 3 HOH A 40 440 40 HOH WAT . C 3 HOH A 41 441 41 HOH WAT . C 3 HOH A 42 442 42 HOH WAT . C 3 HOH A 43 443 43 HOH WAT . C 3 HOH A 44 444 44 HOH WAT . C 3 HOH A 45 445 45 HOH WAT . C 3 HOH A 46 446 46 HOH WAT . C 3 HOH A 47 447 47 HOH WAT . C 3 HOH A 48 448 48 HOH WAT . C 3 HOH A 49 449 49 HOH WAT . C 3 HOH A 50 450 50 HOH WAT . C 3 HOH A 51 451 51 HOH WAT . C 3 HOH A 52 452 52 HOH WAT . C 3 HOH A 53 453 53 HOH WAT . C 3 HOH A 54 454 54 HOH WAT . C 3 HOH A 55 455 55 HOH WAT . C 3 HOH A 56 456 56 HOH WAT . C 3 HOH A 57 457 57 HOH WAT . C 3 HOH A 58 458 58 HOH WAT . C 3 HOH A 59 459 59 HOH WAT . C 3 HOH A 60 460 60 HOH WAT . C 3 HOH A 61 461 61 HOH WAT . C 3 HOH A 62 462 62 HOH WAT . C 3 HOH A 63 463 63 HOH WAT . C 3 HOH A 64 464 64 HOH WAT . C 3 HOH A 65 465 65 HOH WAT . C 3 HOH A 66 466 66 HOH WAT . C 3 HOH A 67 467 67 HOH WAT . C 3 HOH A 68 468 68 HOH WAT . C 3 HOH A 69 469 69 HOH WAT . C 3 HOH A 70 470 70 HOH WAT . C 3 HOH A 71 471 71 HOH WAT . C 3 HOH A 72 472 72 HOH WAT . C 3 HOH A 73 473 73 HOH WAT . C 3 HOH A 74 474 74 HOH WAT . C 3 HOH A 75 475 75 HOH WAT . C 3 HOH A 76 476 76 HOH WAT . C 3 HOH A 77 477 77 HOH WAT . C 3 HOH A 78 478 78 HOH WAT . C 3 HOH A 79 479 79 HOH WAT . C 3 HOH A 80 480 80 HOH WAT . C 3 HOH A 81 481 81 HOH WAT . C 3 HOH A 82 482 82 HOH WAT . C 3 HOH A 83 483 83 HOH WAT . C 3 HOH A 84 484 84 HOH WAT . C 3 HOH A 85 485 85 HOH WAT . C 3 HOH A 86 486 86 HOH WAT . C 3 HOH A 87 487 87 HOH WAT . C 3 HOH A 88 488 88 HOH WAT . C 3 HOH A 89 489 89 HOH WAT . C 3 HOH A 90 490 90 HOH WAT . C 3 HOH A 91 491 91 HOH WAT . C 3 HOH A 92 492 92 HOH WAT . C 3 HOH A 93 493 93 HOH WAT . C 3 HOH A 94 494 94 HOH WAT . C 3 HOH A 95 495 95 HOH WAT . C 3 HOH A 96 496 96 HOH WAT . C 3 HOH A 97 497 97 HOH WAT . C 3 HOH A 98 498 98 HOH WAT . C 3 HOH A 99 499 99 HOH WAT . C 3 HOH A 100 500 100 HOH WAT . C 3 HOH A 101 501 101 HOH WAT . C 3 HOH A 102 502 102 HOH WAT . C 3 HOH A 103 503 503 HOH HOH . C 3 HOH A 104 504 104 HOH WAT . C 3 HOH A 105 505 105 HOH WAT . C 3 HOH A 106 506 106 HOH WAT . C 3 HOH A 107 507 107 HOH WAT . C 3 HOH A 108 508 108 HOH WAT . C 3 HOH A 109 509 109 HOH WAT . C 3 HOH A 110 510 110 HOH WAT . C 3 HOH A 111 511 111 HOH WAT . C 3 HOH A 112 512 112 HOH WAT . C 3 HOH A 113 513 113 HOH WAT . C 3 HOH A 114 514 114 HOH WAT . C 3 HOH A 115 515 115 HOH WAT . C 3 HOH A 116 516 116 HOH WAT . C 3 HOH A 117 517 117 HOH WAT . C 3 HOH A 118 518 118 HOH WAT . C 3 HOH A 119 519 519 HOH HOH . C 3 HOH A 120 520 120 HOH WAT . C 3 HOH A 121 521 121 HOH WAT . C 3 HOH A 122 522 122 HOH WAT . C 3 HOH A 123 523 123 HOH WAT . C 3 HOH A 124 524 124 HOH WAT . C 3 HOH A 125 525 125 HOH WAT . C 3 HOH A 126 526 126 HOH WAT . C 3 HOH A 127 527 127 HOH WAT . C 3 HOH A 128 528 128 HOH WAT . C 3 HOH A 129 529 129 HOH WAT . C 3 HOH A 130 530 130 HOH WAT . C 3 HOH A 131 531 131 HOH WAT . C 3 HOH A 132 532 132 HOH WAT . C 3 HOH A 133 533 133 HOH WAT . C 3 HOH A 134 534 134 HOH WAT . C 3 HOH A 135 535 135 HOH WAT . C 3 HOH A 136 536 136 HOH WAT . C 3 HOH A 137 537 137 HOH WAT . C 3 HOH A 138 538 138 HOH WAT . C 3 HOH A 139 539 139 HOH WAT . C 3 HOH A 140 540 140 HOH WAT . C 3 HOH A 141 541 141 HOH WAT . C 3 HOH A 142 542 142 HOH WAT . C 3 HOH A 143 543 143 HOH WAT . C 3 HOH A 144 544 144 HOH WAT . C 3 HOH A 145 545 145 HOH WAT . C 3 HOH A 146 546 146 HOH WAT . C 3 HOH A 147 547 147 HOH WAT . C 3 HOH A 148 548 148 HOH WAT . C 3 HOH A 149 549 149 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N4 3XL . . . B 2 9.25 5.96 15.167 1 30.39 ? N4 3XL 301 A 1 HETATM 2 C C17 3XL . . . B 2 8.628 6.634 15.891 1 33.01 ? C17 3XL 301 A 1 HETATM 3 C C9 3XL . . . B 2 8.048 7.468 16.695 1 32.47 ? C9 3XL 301 A 1 HETATM 4 N N3 3XL . . . B 2 8.792 8.507 17.136 1 32.55 ? N3 3XL 301 A 1 HETATM 5 C C8 3XL . . . B 2 8.3 9.433 17.97 1 33.26 ? C8 3XL 301 A 1 HETATM 6 C C6 3XL . . . B 2 6.981 9.362 18.388 1 32.16 ? C6 3XL 301 A 1 HETATM 7 N N2 3XL . . . B 2 6.219 10.152 19.192 1 33.27 ? N2 3XL 301 A 1 HETATM 8 C C3 3XL . . . B 2 4.963 9.628 19.25 1 33.16 ? C3 3XL 301 A 1 HETATM 9 N N1 3XL . . . B 2 3.908 10.103 19.931 1 32.44 ? N1 3XL 301 A 1 HETATM 10 C C2 3XL . . . B 2 2.744 9.442 19.865 1 32.74 ? C2 3XL 301 A 1 HETATM 11 C C10 3XL . . . B 2 6.695 7.351 17.075 1 33.19 ? C10 3XL 301 A 1 HETATM 12 C C7 3XL . . . B 2 6.171 8.324 17.936 1 33.96 ? C7 3XL 301 A 1 HETATM 13 C C4 3XL . . . B 2 4.906 8.487 18.484 1 32.36 ? C4 3XL 301 A 1 HETATM 14 C C5 3XL . . . B 2 3.703 7.769 18.395 1 32.82 ? C5 3XL 301 A 1 HETATM 15 C C1 3XL . . . B 2 2.59 8.264 19.125 1 33.45 ? C1 3XL 301 A 1 HETATM 16 C C11 3XL . . . B 2 1.217 7.662 19.112 1 34.07 ? C11 3XL 301 A 1 HETATM 17 C C16 3XL . . . B 2 0.325 7.869 20.182 1 37.1 ? C16 3XL 301 A 1 HETATM 18 C C15 3XL . . . B 2 -0.963 7.34 20.151 1 35.65 ? C15 3XL 301 A 1 HETATM 19 C C14 3XL . . . B 2 -1.395 6.613 19.048 1 35.88 ? C14 3XL 301 A 1 HETATM 20 C C13 3XL . . . B 2 -0.533 6.417 17.97 1 35.39 ? C13 3XL 301 A 1 HETATM 21 C C12 3XL . . . B 2 0.757 6.953 17.996 1 33.69 ? C12 3XL 301 A 1 HETATM 22 O O1 3XL . . . B 2 1.56 6.721 16.919 1 35.55 ? O1 3XL 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #