data_4RVM # _model_server_result.job_id e7WPLzmavQXbA4_X2RsR2g _model_server_result.datetime_utc '2024-10-12 12:22:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rvm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4RVM # _exptl.entry_id 4RVM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 367.446 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3-[4-(piperidin-1-ylmethyl)phenyl]-9H-pyrrolo[2,3-b:5,4-c']dipyridine-6-carbonitrile" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.63 _cell.angle_gamma 90 _cell.entry_id 4RVM _cell.length_a 45.123 _cell.length_b 65.93 _cell.length_c 58.117 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RVM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H21 N5' _chem_comp.formula_weight 367.446 _chem_comp.id 3X7 _chem_comp.mon_nstd_flag . _chem_comp.name "3-[4-(piperidin-1-ylmethyl)phenyl]-9H-pyrrolo[2,3-b:5,4-c']dipyridine-6-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N5 C18 3X7 trip 1 n n C18 C6 3X7 sing 2 n n C6 C5 3X7 doub 3 n y C6 N2 3X7 sing 4 n y C5 C2 3X7 sing 5 n y N2 C7 3X7 doub 6 n y C2 C3 3X7 doub 7 n y C2 C1 3X7 sing 8 n y C12 C13 3X7 doub 9 n y C12 C11 3X7 sing 10 n y C7 C3 3X7 sing 11 n y C13 C14 3X7 sing 12 n y C3 N1 3X7 sing 13 n y C10 C1 3X7 doub 14 n y C10 C9 3X7 sing 15 n y C1 C4 3X7 sing 16 n y C23 C22 3X7 sing 17 n n C23 N4 3X7 sing 18 n n C17 C11 3X7 sing 19 n n C17 N4 3X7 sing 20 n n C22 C21 3X7 sing 21 n n C11 C16 3X7 doub 22 n y C14 C9 3X7 sing 23 n n C14 C15 3X7 doub 24 n y C9 C8 3X7 doub 25 n y N1 C4 3X7 sing 26 n y C4 N3 3X7 doub 27 n y N4 C19 3X7 sing 28 n n C8 N3 3X7 sing 29 n y C16 C15 3X7 sing 30 n y C21 C20 3X7 sing 31 n n C19 C20 3X7 sing 32 n n C7 H1 3X7 sing 33 n n C5 H2 3X7 sing 34 n n C10 H3 3X7 sing 35 n n C8 H4 3X7 sing 36 n n N1 H5 3X7 sing 37 n n C13 H6 3X7 sing 38 n n C12 H7 3X7 sing 39 n n C15 H8 3X7 sing 40 n n C16 H9 3X7 sing 41 n n C17 H10 3X7 sing 42 n n C17 H11 3X7 sing 43 n n C23 H13 3X7 sing 44 n n C23 H14 3X7 sing 45 n n C22 H15 3X7 sing 46 n n C22 H16 3X7 sing 47 n n C21 H17 3X7 sing 48 n n C21 H18 3X7 sing 49 n n C20 H19 3X7 sing 50 n n C20 H20 3X7 sing 51 n n C19 H21 3X7 sing 52 n n C19 H22 3X7 sing 53 n n # _atom_sites.entry_id 4RVM _atom_sites.fract_transf_matrix[1][1] 0.022162 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001794 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015168 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3X7 A 1 301 1 3X7 ZZZ . C 3 HOH A 1 401 1 HOH WAT . C 3 HOH A 2 402 2 HOH WAT . C 3 HOH A 3 403 3 HOH WAT . C 3 HOH A 4 404 4 HOH WAT . C 3 HOH A 5 405 5 HOH WAT . C 3 HOH A 6 406 6 HOH WAT . C 3 HOH A 7 407 7 HOH WAT . C 3 HOH A 8 408 8 HOH WAT . C 3 HOH A 9 409 9 HOH WAT . C 3 HOH A 10 410 10 HOH WAT . C 3 HOH A 11 411 11 HOH WAT . C 3 HOH A 12 412 12 HOH WAT . C 3 HOH A 13 413 13 HOH WAT . C 3 HOH A 14 414 14 HOH WAT . C 3 HOH A 15 415 15 HOH WAT . C 3 HOH A 16 416 16 HOH WAT . C 3 HOH A 17 417 17 HOH WAT . C 3 HOH A 18 418 18 HOH WAT . C 3 HOH A 19 419 19 HOH WAT . C 3 HOH A 20 420 20 HOH WAT . C 3 HOH A 21 421 21 HOH WAT . C 3 HOH A 22 422 22 HOH WAT . C 3 HOH A 23 423 23 HOH WAT . C 3 HOH A 24 424 24 HOH WAT . C 3 HOH A 25 425 25 HOH WAT . C 3 HOH A 26 426 26 HOH WAT . C 3 HOH A 27 427 27 HOH WAT . C 3 HOH A 28 428 28 HOH WAT . C 3 HOH A 29 429 29 HOH WAT . C 3 HOH A 30 430 30 HOH WAT . C 3 HOH A 31 431 31 HOH WAT . C 3 HOH A 32 432 32 HOH WAT . C 3 HOH A 33 433 33 HOH WAT . C 3 HOH A 34 434 34 HOH WAT . C 3 HOH A 35 435 35 HOH WAT . C 3 HOH A 36 436 36 HOH WAT . C 3 HOH A 37 437 37 HOH WAT . C 3 HOH A 38 438 38 HOH WAT . C 3 HOH A 39 439 39 HOH WAT . C 3 HOH A 40 440 40 HOH WAT . C 3 HOH A 41 441 41 HOH WAT . C 3 HOH A 42 442 42 HOH WAT . C 3 HOH A 43 443 43 HOH WAT . C 3 HOH A 44 444 44 HOH WAT . C 3 HOH A 45 445 45 HOH WAT . C 3 HOH A 46 446 46 HOH WAT . C 3 HOH A 47 447 47 HOH WAT . C 3 HOH A 48 448 48 HOH WAT . C 3 HOH A 49 449 49 HOH WAT . C 3 HOH A 50 450 50 HOH WAT . C 3 HOH A 51 451 51 HOH WAT . C 3 HOH A 52 452 52 HOH WAT . C 3 HOH A 53 453 53 HOH WAT . C 3 HOH A 54 454 54 HOH WAT . C 3 HOH A 55 455 55 HOH WAT . C 3 HOH A 56 456 56 HOH WAT . C 3 HOH A 57 457 57 HOH WAT . C 3 HOH A 58 458 58 HOH WAT . C 3 HOH A 59 459 59 HOH WAT . C 3 HOH A 60 460 60 HOH WAT . C 3 HOH A 61 461 61 HOH WAT . C 3 HOH A 62 462 62 HOH WAT . C 3 HOH A 63 463 63 HOH WAT . C 3 HOH A 64 464 64 HOH WAT . C 3 HOH A 65 465 65 HOH WAT . C 3 HOH A 66 466 66 HOH WAT . C 3 HOH A 67 467 67 HOH WAT . C 3 HOH A 68 468 68 HOH WAT . C 3 HOH A 69 469 69 HOH WAT . C 3 HOH A 70 470 70 HOH WAT . C 3 HOH A 71 471 71 HOH WAT . C 3 HOH A 72 472 72 HOH WAT . C 3 HOH A 73 473 73 HOH WAT . C 3 HOH A 74 474 74 HOH WAT . C 3 HOH A 75 475 75 HOH WAT . C 3 HOH A 76 476 76 HOH WAT . C 3 HOH A 77 477 77 HOH WAT . C 3 HOH A 78 478 78 HOH WAT . C 3 HOH A 79 479 79 HOH WAT . C 3 HOH A 80 480 80 HOH WAT . C 3 HOH A 81 481 81 HOH WAT . C 3 HOH A 82 482 82 HOH WAT . C 3 HOH A 83 483 83 HOH WAT . C 3 HOH A 84 484 84 HOH WAT . C 3 HOH A 85 485 85 HOH WAT . C 3 HOH A 86 486 86 HOH WAT . C 3 HOH A 87 487 87 HOH WAT . C 3 HOH A 88 488 89 HOH WAT . C 3 HOH A 89 489 90 HOH WAT . C 3 HOH A 90 490 91 HOH WAT . C 3 HOH A 91 491 92 HOH WAT . C 3 HOH A 92 492 93 HOH WAT . C 3 HOH A 93 493 94 HOH WAT . C 3 HOH A 94 494 95 HOH WAT . C 3 HOH A 95 495 96 HOH WAT . C 3 HOH A 96 496 97 HOH WAT . C 3 HOH A 97 497 98 HOH WAT . C 3 HOH A 98 498 99 HOH WAT . C 3 HOH A 99 499 100 HOH WAT . C 3 HOH A 100 500 101 HOH WAT . C 3 HOH A 101 501 102 HOH WAT . C 3 HOH A 102 502 103 HOH WAT . C 3 HOH A 103 503 104 HOH WAT . C 3 HOH A 104 504 105 HOH WAT . C 3 HOH A 105 505 106 HOH WAT . C 3 HOH A 106 506 107 HOH WAT . C 3 HOH A 107 507 108 HOH WAT . C 3 HOH A 108 508 109 HOH WAT . C 3 HOH A 109 509 110 HOH WAT . C 3 HOH A 110 510 111 HOH WAT . C 3 HOH A 111 511 112 HOH WAT . C 3 HOH A 112 512 113 HOH WAT . C 3 HOH A 113 513 114 HOH WAT . C 3 HOH A 114 514 115 HOH WAT . C 3 HOH A 115 515 116 HOH WAT . C 3 HOH A 116 516 117 HOH WAT . C 3 HOH A 117 517 118 HOH WAT . C 3 HOH A 118 518 119 HOH WAT . C 3 HOH A 119 519 120 HOH WAT . C 3 HOH A 120 520 121 HOH WAT . C 3 HOH A 121 521 122 HOH WAT . C 3 HOH A 122 522 123 HOH WAT . C 3 HOH A 123 523 124 HOH WAT . C 3 HOH A 124 524 125 HOH WAT . C 3 HOH A 125 525 126 HOH WAT . C 3 HOH A 126 526 127 HOH WAT . C 3 HOH A 127 527 128 HOH WAT . C 3 HOH A 128 528 129 HOH WAT . C 3 HOH A 129 529 130 HOH WAT . C 3 HOH A 130 530 131 HOH WAT . C 3 HOH A 131 531 133 HOH WAT . C 3 HOH A 132 532 134 HOH WAT . C 3 HOH A 133 533 135 HOH WAT . C 3 HOH A 134 534 136 HOH WAT . C 3 HOH A 135 535 137 HOH WAT . C 3 HOH A 136 536 138 HOH WAT . C 3 HOH A 137 537 139 HOH WAT . C 3 HOH A 138 538 140 HOH WAT . C 3 HOH A 139 539 141 HOH WAT . C 3 HOH A 140 540 142 HOH WAT . C 3 HOH A 141 541 143 HOH WAT . C 3 HOH A 142 542 144 HOH WAT . C 3 HOH A 143 543 145 HOH WAT . C 3 HOH A 144 544 146 HOH WAT . C 3 HOH A 145 545 147 HOH WAT . C 3 HOH A 146 546 148 HOH WAT . C 3 HOH A 147 547 149 HOH WAT . C 3 HOH A 148 548 150 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N5 3X7 . . . B 2 9.057 6.023 15.19 1 21.75 ? N5 3X7 301 A 1 HETATM 2 C C18 3X7 . . . B 2 8.581 6.75 15.992 1 26.55 ? C18 3X7 301 A 1 HETATM 3 C C6 3X7 . . . B 2 7.984 7.554 16.825 1 24.66 ? C6 3X7 301 A 1 HETATM 4 N N2 3X7 . . . B 2 8.699 8.607 17.294 1 26.24 ? N2 3X7 301 A 1 HETATM 5 C C7 3X7 . . . B 2 8.198 9.494 18.127 1 23.92 ? C7 3X7 301 A 1 HETATM 6 C C3 3X7 . . . B 2 6.879 9.392 18.536 1 25.81 ? C3 3X7 301 A 1 HETATM 7 C C5 3X7 . . . B 2 6.637 7.405 17.204 1 24.96 ? C5 3X7 301 A 1 HETATM 8 C C2 3X7 . . . B 2 6.091 8.355 18.078 1 26.1 ? C2 3X7 301 A 1 HETATM 9 C C1 3X7 . . . B 2 4.827 8.493 18.639 1 26.58 ? C1 3X7 301 A 1 HETATM 10 C C10 3X7 . . . B 2 3.629 7.784 18.543 1 23.14 ? C10 3X7 301 A 1 HETATM 11 C C9 3X7 . . . B 2 2.528 8.302 19.3 1 26.64 ? C9 3X7 301 A 1 HETATM 12 C C8 3X7 . . . B 2 2.675 9.464 20.055 1 24.69 ? C8 3X7 301 A 1 HETATM 13 N N3 3X7 . . . B 2 3.828 10.117 20.111 1 22.3 ? N3 3X7 301 A 1 HETATM 14 C C4 3X7 . . . B 2 4.871 9.624 19.434 1 26.81 ? C4 3X7 301 A 1 HETATM 15 N N1 3X7 . . . B 2 6.113 10.158 19.36 1 27.32 ? N1 3X7 301 A 1 HETATM 16 C C14 3X7 . . . B 2 1.176 7.676 19.285 1 27.44 ? C14 3X7 301 A 1 HETATM 17 C C13 3X7 . . . B 2 0.77 6.936 18.157 1 28.78 ? C13 3X7 301 A 1 HETATM 18 C C12 3X7 . . . B 2 -0.505 6.362 18.118 1 30.33 ? C12 3X7 301 A 1 HETATM 19 C C15 3X7 . . . B 2 0.272 7.864 20.349 1 31.81 ? C15 3X7 301 A 1 HETATM 20 C C16 3X7 . . . B 2 -0.996 7.291 20.307 1 30.48 ? C16 3X7 301 A 1 HETATM 21 C C11 3X7 . . . B 2 -1.384 6.533 19.203 1 31.21 ? C11 3X7 301 A 1 HETATM 22 C C17 3X7 . . . B 2 -2.76 5.909 19.194 1 33.46 ? C17 3X7 301 A 1 HETATM 23 N N4 3X7 . . . B 2 -2.735 4.508 19.684 1 43.62 ? N4 3X7 301 A 1 HETATM 24 C C23 3X7 . . . B 2 -1.997 3.624 18.762 1 44.85 ? C23 3X7 301 A 1 HETATM 25 C C22 3X7 . . . B 2 -2.198 2.182 19.196 1 51.74 ? C22 3X7 301 A 1 HETATM 26 C C21 3X7 . . . B 2 -1.703 1.987 20.628 1 51.46 ? C21 3X7 301 A 1 HETATM 27 C C20 3X7 . . . B 2 -2.346 2.991 21.585 1 50.51 ? C20 3X7 301 A 1 HETATM 28 C C19 3X7 . . . B 2 -2.193 4.415 21.065 1 46.57 ? C19 3X7 301 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #