data_4RVQ # _model_server_result.job_id pYMppufTr_7DTW3yZSyIvw _model_server_result.datetime_utc '2025-08-02 04:29:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 4RVQ # _exptl.entry_id 4RVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.56 _cell.angle_gamma 90 _cell.entry_id 4RVQ _cell.length_a 123.846 _cell.length_b 45.752 _cell.length_c 27.42 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 I N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 4RVQ _atom_sites.fract_transf_matrix[1][1] 0.008075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001799 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021857 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.037364 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 501 4 SO4 SO4 . C 2 SO4 A 1 502 5 SO4 SO4 . D 2 SO4 A 1 503 6 SO4 SO4 . E 2 SO4 A 1 504 7 SO4 SO4 . F 3 EDO A 1 505 1 EDO EDO . G 3 EDO A 1 506 2 EDO EDO . H 3 EDO A 1 507 3 EDO EDO . I 3 EDO A 1 508 4 EDO EDO . J 4 HOH A 1 601 1 HOH HOH . J 4 HOH A 2 602 2 HOH HOH . J 4 HOH A 3 603 3 HOH HOH . J 4 HOH A 4 604 4 HOH HOH . J 4 HOH A 5 605 5 HOH HOH . J 4 HOH A 6 606 6 HOH HOH . J 4 HOH A 7 607 7 HOH HOH . J 4 HOH A 8 608 8 HOH HOH . J 4 HOH A 9 609 9 HOH HOH . J 4 HOH A 10 610 10 HOH HOH . J 4 HOH A 11 611 11 HOH HOH . J 4 HOH A 12 612 12 HOH HOH . J 4 HOH A 13 613 13 HOH HOH . J 4 HOH A 14 614 14 HOH HOH . J 4 HOH A 15 615 15 HOH HOH . J 4 HOH A 16 616 17 HOH HOH . J 4 HOH A 17 617 18 HOH HOH . J 4 HOH A 18 618 19 HOH HOH . J 4 HOH A 19 619 20 HOH HOH . J 4 HOH A 20 620 21 HOH HOH . J 4 HOH A 21 621 22 HOH HOH . J 4 HOH A 22 622 23 HOH HOH . J 4 HOH A 23 623 24 HOH HOH . J 4 HOH A 24 624 25 HOH HOH . J 4 HOH A 25 625 26 HOH HOH . J 4 HOH A 26 626 27 HOH HOH . J 4 HOH A 27 627 28 HOH HOH . J 4 HOH A 28 628 29 HOH HOH . J 4 HOH A 29 629 30 HOH HOH . J 4 HOH A 30 630 31 HOH HOH . J 4 HOH A 31 631 33 HOH HOH . J 4 HOH A 32 632 34 HOH HOH . J 4 HOH A 33 633 35 HOH HOH . J 4 HOH A 34 634 36 HOH HOH . J 4 HOH A 35 635 37 HOH HOH . J 4 HOH A 36 636 38 HOH HOH . J 4 HOH A 37 637 39 HOH HOH . J 4 HOH A 38 638 40 HOH HOH . J 4 HOH A 39 639 41 HOH HOH . J 4 HOH A 40 640 42 HOH HOH . J 4 HOH A 41 641 43 HOH HOH . J 4 HOH A 42 642 44 HOH HOH . J 4 HOH A 43 643 45 HOH HOH . J 4 HOH A 44 644 46 HOH HOH . J 4 HOH A 45 645 47 HOH HOH . J 4 HOH A 46 646 48 HOH HOH . J 4 HOH A 47 647 49 HOH HOH . J 4 HOH A 48 648 50 HOH HOH . J 4 HOH A 49 649 51 HOH HOH . J 4 HOH A 50 650 52 HOH HOH . J 4 HOH A 51 651 53 HOH HOH . J 4 HOH A 52 652 54 HOH HOH . J 4 HOH A 53 653 55 HOH HOH . J 4 HOH A 54 654 56 HOH HOH . J 4 HOH A 55 655 57 HOH HOH . J 4 HOH A 56 656 58 HOH HOH . J 4 HOH A 57 657 59 HOH HOH . J 4 HOH A 58 658 60 HOH HOH . J 4 HOH A 59 659 61 HOH HOH . J 4 HOH A 60 660 62 HOH HOH . J 4 HOH A 61 661 63 HOH HOH . J 4 HOH A 62 662 64 HOH HOH . J 4 HOH A 63 663 65 HOH HOH . J 4 HOH A 64 664 66 HOH HOH . J 4 HOH A 65 665 67 HOH HOH . J 4 HOH A 66 666 68 HOH HOH . J 4 HOH A 67 667 69 HOH HOH . J 4 HOH A 68 668 70 HOH HOH . J 4 HOH A 69 669 71 HOH HOH . J 4 HOH A 70 670 72 HOH HOH . J 4 HOH A 71 671 73 HOH HOH . J 4 HOH A 72 672 74 HOH HOH . J 4 HOH A 73 673 75 HOH HOH . J 4 HOH A 74 674 76 HOH HOH . J 4 HOH A 75 675 77 HOH HOH . J 4 HOH A 76 676 78 HOH HOH . J 4 HOH A 77 677 79 HOH HOH . J 4 HOH A 78 678 80 HOH HOH . J 4 HOH A 79 679 81 HOH HOH . J 4 HOH A 80 680 82 HOH HOH . J 4 HOH A 81 681 83 HOH HOH . J 4 HOH A 82 682 84 HOH HOH . J 4 HOH A 83 683 85 HOH HOH . J 4 HOH A 84 684 86 HOH HOH . J 4 HOH A 85 685 87 HOH HOH . J 4 HOH A 86 686 88 HOH HOH . J 4 HOH A 87 687 89 HOH HOH . J 4 HOH A 88 688 90 HOH HOH . J 4 HOH A 89 689 91 HOH HOH . J 4 HOH A 90 690 92 HOH HOH . J 4 HOH A 91 691 93 HOH HOH . J 4 HOH A 92 692 94 HOH HOH . J 4 HOH A 93 693 95 HOH HOH . J 4 HOH A 94 694 96 HOH HOH . J 4 HOH A 95 695 97 HOH HOH . J 4 HOH A 96 696 98 HOH HOH . J 4 HOH A 97 697 99 HOH HOH . J 4 HOH A 98 698 100 HOH HOH . J 4 HOH A 99 699 101 HOH HOH . J 4 HOH A 100 700 102 HOH HOH . J 4 HOH A 101 701 103 HOH HOH . J 4 HOH A 102 702 104 HOH HOH . J 4 HOH A 103 703 105 HOH HOH . J 4 HOH A 104 704 106 HOH HOH . J 4 HOH A 105 705 107 HOH HOH . J 4 HOH A 106 706 108 HOH HOH . J 4 HOH A 107 707 109 HOH HOH . J 4 HOH A 108 708 110 HOH HOH . J 4 HOH A 109 709 112 HOH HOH . J 4 HOH A 110 710 113 HOH HOH . J 4 HOH A 111 711 114 HOH HOH . J 4 HOH A 112 712 115 HOH HOH . J 4 HOH A 113 713 116 HOH HOH . J 4 HOH A 114 714 117 HOH HOH . J 4 HOH A 115 715 118 HOH HOH . J 4 HOH A 116 716 119 HOH HOH . J 4 HOH A 117 717 122 HOH HOH . J 4 HOH A 118 718 123 HOH HOH . J 4 HOH A 119 719 124 HOH HOH . J 4 HOH A 120 720 125 HOH HOH . J 4 HOH A 121 721 128 HOH HOH . J 4 HOH A 122 722 129 HOH HOH . J 4 HOH A 123 723 131 HOH HOH . J 4 HOH A 124 724 132 HOH HOH . J 4 HOH A 125 725 133 HOH HOH . J 4 HOH A 126 726 134 HOH HOH . J 4 HOH A 127 727 135 HOH HOH . J 4 HOH A 128 728 137 HOH HOH . J 4 HOH A 129 729 139 HOH HOH . J 4 HOH A 130 730 142 HOH HOH . J 4 HOH A 131 731 147 HOH HOH . J 4 HOH A 132 732 150 HOH HOH . J 4 HOH A 133 733 151 HOH HOH . J 4 HOH A 134 734 152 HOH HOH . J 4 HOH A 135 735 155 HOH HOH . J 4 HOH A 136 736 156 HOH HOH . J 4 HOH A 137 737 157 HOH HOH . J 4 HOH A 138 738 160 HOH HOH . J 4 HOH A 139 739 161 HOH HOH . J 4 HOH A 140 740 162 HOH HOH . J 4 HOH A 141 741 163 HOH HOH . J 4 HOH A 142 742 164 HOH HOH . J 4 HOH A 143 743 165 HOH HOH . J 4 HOH A 144 744 167 HOH HOH . J 4 HOH A 145 745 168 HOH HOH . J 4 HOH A 146 746 170 HOH HOH . J 4 HOH A 147 747 171 HOH HOH . J 4 HOH A 148 748 172 HOH HOH . J 4 HOH A 149 749 173 HOH HOH . J 4 HOH A 150 750 174 HOH HOH . J 4 HOH A 151 751 176 HOH HOH . J 4 HOH A 152 752 177 HOH HOH . J 4 HOH A 153 753 178 HOH HOH . J 4 HOH A 154 754 179 HOH HOH . J 4 HOH A 155 755 181 HOH HOH . J 4 HOH A 156 756 183 HOH HOH . J 4 HOH A 157 757 184 HOH HOH . J 4 HOH A 158 758 189 HOH HOH . J 4 HOH A 159 759 191 HOH HOH . J 4 HOH A 160 760 192 HOH HOH . J 4 HOH A 161 761 196 HOH HOH . J 4 HOH A 162 762 201 HOH HOH . J 4 HOH A 163 763 203 HOH HOH . J 4 HOH A 164 764 204 HOH HOH . J 4 HOH A 165 765 206 HOH HOH . J 4 HOH A 166 766 207 HOH HOH . J 4 HOH A 167 767 208 HOH HOH . J 4 HOH A 168 768 209 HOH HOH . J 4 HOH A 169 769 210 HOH HOH . J 4 HOH A 170 770 211 HOH HOH . J 4 HOH A 171 771 213 HOH HOH . J 4 HOH A 172 772 214 HOH HOH . J 4 HOH A 173 773 215 HOH HOH . J 4 HOH A 174 774 216 HOH HOH . J 4 HOH A 175 775 217 HOH HOH . J 4 HOH A 176 776 218 HOH HOH . J 4 HOH A 177 777 219 HOH HOH . J 4 HOH A 178 778 220 HOH HOH . J 4 HOH A 179 779 221 HOH HOH . J 4 HOH A 180 780 222 HOH HOH . J 4 HOH A 181 781 223 HOH HOH . J 4 HOH A 182 782 224 HOH HOH . J 4 HOH A 183 783 225 HOH HOH . J 4 HOH A 184 784 227 HOH HOH . J 4 HOH A 185 785 228 HOH HOH . J 4 HOH A 186 786 231 HOH HOH . J 4 HOH A 187 787 232 HOH HOH . J 4 HOH A 188 788 233 HOH HOH . J 4 HOH A 189 789 234 HOH HOH . J 4 HOH A 190 790 235 HOH HOH . J 4 HOH A 191 791 236 HOH HOH . J 4 HOH A 192 792 238 HOH HOH . J 4 HOH A 193 793 239 HOH HOH . J 4 HOH A 194 794 240 HOH HOH . J 4 HOH A 195 795 241 HOH HOH . J 4 HOH A 196 796 243 HOH HOH . J 4 HOH A 197 797 244 HOH HOH . J 4 HOH A 198 798 245 HOH HOH . J 4 HOH A 199 799 246 HOH HOH . J 4 HOH A 200 800 247 HOH HOH . J 4 HOH A 201 801 249 HOH HOH . J 4 HOH A 202 802 251 HOH HOH . J 4 HOH A 203 803 252 HOH HOH . J 4 HOH A 204 804 253 HOH HOH . J 4 HOH A 205 805 254 HOH HOH . J 4 HOH A 206 806 255 HOH HOH . J 4 HOH A 207 807 257 HOH HOH . J 4 HOH A 208 808 263 HOH HOH . J 4 HOH A 209 809 264 HOH HOH . J 4 HOH A 210 810 267 HOH HOH . J 4 HOH A 211 811 268 HOH HOH . J 4 HOH A 212 812 270 HOH HOH . J 4 HOH A 213 813 272 HOH HOH . J 4 HOH A 214 814 273 HOH HOH . J 4 HOH A 215 815 275 HOH HOH . J 4 HOH A 216 816 276 HOH HOH . J 4 HOH A 217 817 278 HOH HOH . J 4 HOH A 218 818 282 HOH HOH . J 4 HOH A 219 819 285 HOH HOH . J 4 HOH A 220 820 286 HOH HOH . J 4 HOH A 221 821 289 HOH HOH . J 4 HOH A 222 822 290 HOH HOH . J 4 HOH A 223 823 291 HOH HOH . J 4 HOH A 224 824 295 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 3 25.103 -40.326 -8.845 1 19.8 ? C1 EDO 508 A 1 HETATM 2 O O1 EDO . . . I 3 26.437 -40.68 -9.217 1 26.19 ? O1 EDO 508 A 1 HETATM 3 C C2 EDO . . . I 3 25.158 -38.826 -8.744 1 14.05 ? C2 EDO 508 A 1 HETATM 4 O O2 EDO . . . I 3 25.097 -38.28 -10.036 1 12.21 ? O2 EDO 508 A 1 HETATM 5 H H11 EDO . . . I 3 24.388 -40.64 -9.608 1 23.76 ? H11 EDO 508 A 1 HETATM 6 H H12 EDO . . . I 3 24.833 -40.773 -7.886 1 23.76 ? H12 EDO 508 A 1 HETATM 7 H HO1 EDO . . . I 3 26.502 -41.641 -9.308 1 31.42 ? HO1 EDO 508 A 1 HETATM 8 H H21 EDO . . . I 3 24.319 -38.462 -8.147 1 16.87 ? H21 EDO 508 A 1 HETATM 9 H H22 EDO . . . I 3 26.085 -38.52 -8.255 1 16.87 ? H22 EDO 508 A 1 HETATM 10 H HO2 EDO . . . I 3 25.131 -37.315 -9.981 1 14.66 ? HO2 EDO 508 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 737 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #