data_4RW3 # _model_server_result.job_id 1QkF4Q9J2Cej-HF9La7ZJg _model_server_result.datetime_utc '2024-11-28 06:40:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rw3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":313}' # _entry.id 4RW3 # _exptl.entry_id 4RW3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.344 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-TRIDECANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.83 _cell.angle_gamma 90 _cell.entry_id 4RW3 _cell.length_a 49.81 _cell.length_b 49.3 _cell.length_c 56.3 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RW3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 10 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 52 1_555 A SG CYS 80 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 76 A CYS 54 1_555 A SG CYS 219 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 A OE2 GLU 54 A GLU 32 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc2 A OD1 ASP 56 A ASP 34 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc3 A OD2 ASP 114 A ASP 92 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc4 B MG MG . A MG 301 1_555 E O5 IPD . A IPD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? metalc ? metalc5 B MG MG . A MG 301 1_555 E O6 IPD . A IPD 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc6 B MG MG . A MG 301 1_555 O O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C13 H26 O2' _chem_comp.formula_weight 214.344 _chem_comp.id TDA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-TRIDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O21 C21 TDA sing 473 n n O21 H21 TDA sing 474 n n O22 C21 TDA doub 475 n n C21 C22 TDA sing 476 n n C22 C23 TDA sing 477 n n C22 H222 TDA sing 478 n n C22 H221 TDA sing 479 n n C23 C24 TDA sing 480 n n C23 H232 TDA sing 481 n n C23 H231 TDA sing 482 n n C24 C25 TDA sing 483 n n C24 H242 TDA sing 484 n n C24 H241 TDA sing 485 n n C25 C26 TDA sing 486 n n C25 H252 TDA sing 487 n n C25 H251 TDA sing 488 n n C26 C27 TDA sing 489 n n C26 H262 TDA sing 490 n n C26 H261 TDA sing 491 n n C27 C28 TDA sing 492 n n C27 H272 TDA sing 493 n n C27 H271 TDA sing 494 n n C28 C29 TDA sing 495 n n C28 H282 TDA sing 496 n n C28 H281 TDA sing 497 n n C29 C30 TDA sing 498 n n C29 H292 TDA sing 499 n n C29 H291 TDA sing 500 n n C30 C31 TDA sing 501 n n C30 H302 TDA sing 502 n n C30 H301 TDA sing 503 n n C31 C32 TDA sing 504 n n C31 H312 TDA sing 505 n n C31 H311 TDA sing 506 n n C32 C33 TDA sing 507 n n C32 H322 TDA sing 508 n n C32 H321 TDA sing 509 n n C33 H333 TDA sing 510 n n C33 H332 TDA sing 511 n n C33 H331 TDA sing 512 n n # _atom_sites.entry_id 4RW3 _atom_sites.fract_transf_matrix[1][1] 0.020076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005692 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020284 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018462 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 1 MG MG . C 3 PEG A 1 302 2 PEG PEG . D 3 PEG A 1 303 3 PEG PEG . E 4 IPD A 1 304 4 IPD IPD . F 5 GOL A 1 305 5 GOL GOL . G 6 OCA A 1 306 6 OCA OCA . H 7 SHV A 1 307 7 SHV SHV . I 8 DKA A 1 308 8 DKA DKA . J 9 PLM A 1 309 9 PLM PLM . K 9 PLM A 1 310 10 PLM PLM . L 9 PLM A 1 311 11 PLM PLM . M 8 DKA A 1 312 12 DKA DKA . N 10 TDA A 1 313 13 TDA TDA . O 11 HOH A 1 401 1 HOH HOH . O 11 HOH A 2 402 2 HOH HOH . O 11 HOH A 3 403 3 HOH HOH . O 11 HOH A 4 404 4 HOH HOH . O 11 HOH A 5 405 5 HOH HOH . O 11 HOH A 6 406 6 HOH HOH . O 11 HOH A 7 407 7 HOH HOH . O 11 HOH A 8 408 8 HOH HOH . O 11 HOH A 9 409 9 HOH HOH . O 11 HOH A 10 410 10 HOH HOH . O 11 HOH A 11 411 11 HOH HOH . O 11 HOH A 12 412 12 HOH HOH . O 11 HOH A 13 413 13 HOH HOH . O 11 HOH A 14 414 14 HOH HOH . O 11 HOH A 15 415 15 HOH HOH . O 11 HOH A 16 416 16 HOH HOH . O 11 HOH A 17 417 17 HOH HOH . O 11 HOH A 18 418 18 HOH HOH . O 11 HOH A 19 419 19 HOH HOH . O 11 HOH A 20 420 20 HOH HOH . O 11 HOH A 21 421 21 HOH HOH . O 11 HOH A 22 422 22 HOH HOH . O 11 HOH A 23 423 23 HOH HOH . O 11 HOH A 24 424 24 HOH HOH . O 11 HOH A 25 425 25 HOH HOH . O 11 HOH A 26 426 26 HOH HOH . O 11 HOH A 27 427 27 HOH HOH . O 11 HOH A 28 428 28 HOH HOH . O 11 HOH A 29 429 29 HOH HOH . O 11 HOH A 30 430 30 HOH HOH . O 11 HOH A 31 431 31 HOH HOH . O 11 HOH A 32 432 32 HOH HOH . O 11 HOH A 33 433 33 HOH HOH . O 11 HOH A 34 434 34 HOH HOH . O 11 HOH A 35 435 35 HOH HOH . O 11 HOH A 36 436 36 HOH HOH . O 11 HOH A 37 437 37 HOH HOH . O 11 HOH A 38 438 38 HOH HOH . O 11 HOH A 39 439 39 HOH HOH . O 11 HOH A 40 440 40 HOH HOH . O 11 HOH A 41 441 41 HOH HOH . O 11 HOH A 42 442 42 HOH HOH . O 11 HOH A 43 443 43 HOH HOH . O 11 HOH A 44 444 44 HOH HOH . O 11 HOH A 45 445 45 HOH HOH . O 11 HOH A 46 446 46 HOH HOH . O 11 HOH A 47 447 47 HOH HOH . O 11 HOH A 48 448 48 HOH HOH . O 11 HOH A 49 449 49 HOH HOH . O 11 HOH A 50 450 50 HOH HOH . O 11 HOH A 51 451 51 HOH HOH . O 11 HOH A 52 452 52 HOH HOH . O 11 HOH A 53 453 53 HOH HOH . O 11 HOH A 54 454 54 HOH HOH . O 11 HOH A 55 455 55 HOH HOH . O 11 HOH A 56 456 56 HOH HOH . O 11 HOH A 57 457 57 HOH HOH . O 11 HOH A 58 458 58 HOH HOH . O 11 HOH A 59 459 59 HOH HOH . O 11 HOH A 60 460 60 HOH HOH . O 11 HOH A 61 461 61 HOH HOH . O 11 HOH A 62 462 62 HOH HOH . O 11 HOH A 63 463 63 HOH HOH . O 11 HOH A 64 464 64 HOH HOH . O 11 HOH A 65 465 65 HOH HOH . O 11 HOH A 66 466 66 HOH HOH . O 11 HOH A 67 467 67 HOH HOH . O 11 HOH A 68 468 68 HOH HOH . O 11 HOH A 69 469 69 HOH HOH . O 11 HOH A 70 470 70 HOH HOH . O 11 HOH A 71 471 71 HOH HOH . O 11 HOH A 72 472 72 HOH HOH . O 11 HOH A 73 473 73 HOH HOH . O 11 HOH A 74 474 74 HOH HOH . O 11 HOH A 75 475 75 HOH HOH . O 11 HOH A 76 476 76 HOH HOH . O 11 HOH A 77 477 77 HOH HOH . O 11 HOH A 78 478 78 HOH HOH . O 11 HOH A 79 479 79 HOH HOH . O 11 HOH A 80 480 80 HOH HOH . O 11 HOH A 81 481 81 HOH HOH . O 11 HOH A 82 482 82 HOH HOH . O 11 HOH A 83 483 83 HOH HOH . O 11 HOH A 84 484 84 HOH HOH . O 11 HOH A 85 485 85 HOH HOH . O 11 HOH A 86 486 86 HOH HOH . O 11 HOH A 87 487 87 HOH HOH . O 11 HOH A 88 488 88 HOH HOH . O 11 HOH A 89 489 89 HOH HOH . O 11 HOH A 90 490 90 HOH HOH . O 11 HOH A 91 491 91 HOH HOH . O 11 HOH A 92 492 92 HOH HOH . O 11 HOH A 93 493 93 HOH HOH . O 11 HOH A 94 494 94 HOH HOH . O 11 HOH A 95 495 95 HOH HOH . O 11 HOH A 96 496 96 HOH HOH . O 11 HOH A 97 497 97 HOH HOH . O 11 HOH A 98 498 98 HOH HOH . O 11 HOH A 99 499 99 HOH HOH . O 11 HOH A 100 500 100 HOH HOH . O 11 HOH A 101 501 101 HOH HOH . O 11 HOH A 102 502 102 HOH HOH . O 11 HOH A 103 503 103 HOH HOH . O 11 HOH A 104 504 104 HOH HOH . O 11 HOH A 105 505 105 HOH HOH . O 11 HOH A 106 506 106 HOH HOH . O 11 HOH A 107 507 107 HOH HOH . O 11 HOH A 108 508 108 HOH HOH . O 11 HOH A 109 509 109 HOH HOH . O 11 HOH A 110 510 110 HOH HOH . O 11 HOH A 111 511 111 HOH HOH . O 11 HOH A 112 512 112 HOH HOH . O 11 HOH A 113 513 113 HOH HOH . O 11 HOH A 114 514 114 HOH HOH . O 11 HOH A 115 515 115 HOH HOH . O 11 HOH A 116 516 116 HOH HOH . O 11 HOH A 117 517 117 HOH HOH . O 11 HOH A 118 518 118 HOH HOH . O 11 HOH A 119 519 119 HOH HOH . O 11 HOH A 120 520 120 HOH HOH . O 11 HOH A 121 521 121 HOH HOH . O 11 HOH A 122 522 122 HOH HOH . O 11 HOH A 123 523 123 HOH HOH . O 11 HOH A 124 524 124 HOH HOH . O 11 HOH A 125 525 125 HOH HOH . O 11 HOH A 126 526 126 HOH HOH . O 11 HOH A 127 527 127 HOH HOH . O 11 HOH A 128 528 128 HOH HOH . O 11 HOH A 129 529 129 HOH HOH . O 11 HOH A 130 530 130 HOH HOH . O 11 HOH A 131 531 131 HOH HOH . O 11 HOH A 132 532 132 HOH HOH . O 11 HOH A 133 533 133 HOH HOH . O 11 HOH A 134 534 134 HOH HOH . O 11 HOH A 135 535 135 HOH HOH . O 11 HOH A 136 536 136 HOH HOH . O 11 HOH A 137 537 137 HOH HOH . O 11 HOH A 138 538 138 HOH HOH . O 11 HOH A 139 539 139 HOH HOH . O 11 HOH A 140 540 140 HOH HOH . O 11 HOH A 141 541 141 HOH HOH . O 11 HOH A 142 542 142 HOH HOH . O 11 HOH A 143 543 143 HOH HOH . O 11 HOH A 144 544 144 HOH HOH . O 11 HOH A 145 545 145 HOH HOH . O 11 HOH A 146 546 146 HOH HOH . O 11 HOH A 147 547 147 HOH HOH . O 11 HOH A 148 548 148 HOH HOH . O 11 HOH A 149 549 149 HOH HOH . O 11 HOH A 150 550 150 HOH HOH . O 11 HOH A 151 551 151 HOH HOH . O 11 HOH A 152 552 152 HOH HOH . O 11 HOH A 153 553 153 HOH HOH . O 11 HOH A 154 554 154 HOH HOH . O 11 HOH A 155 555 155 HOH HOH . O 11 HOH A 156 556 156 HOH HOH . O 11 HOH A 157 557 157 HOH HOH . O 11 HOH A 158 558 158 HOH HOH . O 11 HOH A 159 559 159 HOH HOH . O 11 HOH A 160 560 160 HOH HOH . O 11 HOH A 161 561 161 HOH HOH . O 11 HOH A 162 562 162 HOH HOH . O 11 HOH A 163 563 163 HOH HOH . O 11 HOH A 164 564 164 HOH HOH . O 11 HOH A 165 565 165 HOH HOH . O 11 HOH A 166 566 166 HOH HOH . O 11 HOH A 167 567 167 HOH HOH . O 11 HOH A 168 568 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 TDA . . . N 10 6.744 -24.995 8.023 1 51.13 ? O21 TDA 313 A 1 HETATM 2 O O22 TDA . . . N 10 5.405 -24.72 9.657 1 51.92 ? O22 TDA 313 A 1 HETATM 3 C C21 TDA . . . N 10 5.781 -24.434 8.533 1 50.34 ? C21 TDA 313 A 1 HETATM 4 C C22 TDA . . . N 10 5.061 -23.334 7.799 1 47.09 ? C22 TDA 313 A 1 HETATM 5 C C23 TDA . . . N 10 5.822 -22.022 7.958 1 43.86 ? C23 TDA 313 A 1 HETATM 6 C C24 TDA . . . N 10 4.974 -20.747 8.058 1 41.78 ? C24 TDA 313 A 1 HETATM 7 C C25 TDA . . . N 10 4.71 -20.32 9.484 1 41.77 ? C25 TDA 313 A 1 HETATM 8 C C26 TDA . . . N 10 3.616 -19.29 9.717 1 41.22 ? C26 TDA 313 A 1 HETATM 9 C C27 TDA . . . N 10 2.709 -19.517 10.904 1 42.12 ? C27 TDA 313 A 1 HETATM 10 C C28 TDA . . . N 10 2.584 -20.955 11.376 1 46 ? C28 TDA 313 A 1 HETATM 11 C C29 TDA . . . N 10 1.198 -21.537 11.281 1 47.13 ? C29 TDA 313 A 1 HETATM 12 C C30 TDA . . . N 10 1.111 -22.969 11.768 1 47.69 ? C30 TDA 313 A 1 HETATM 13 C C31 TDA . . . N 10 1.877 -23.883 10.832 1 48.35 ? C31 TDA 313 A 1 HETATM 14 C C32 TDA . . . N 10 1.42 -25.333 10.854 1 46.81 ? C32 TDA 313 A 1 HETATM 15 C C33 TDA . . . N 10 2.548 -26.148 11.42 1 46.59 ? C33 TDA 313 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 15 #