data_4RW5 # _model_server_result.job_id Y0G1Yrpac1J3VYHkWdD6_A _model_server_result.datetime_utc '2025-04-01 10:13:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 4RW5 # _exptl.entry_id 4RW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.71 _cell.angle_gamma 90 _cell.entry_id 4RW5 _cell.length_a 49.761 _cell.length_b 49.341 _cell.length_c 56.152 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 52 1_555 A SG CYS 80 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 76 A CYS 54 1_555 A SG CYS 219 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc1 A OE2 GLU 54 A GLU 32 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc2 A OD1 ASP 56 A ASP 34 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc3 A OD2 ASP 114 A ASP 92 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 B MG MG . A MG 301 1_555 F O1 OCA . A OCA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc5 B MG MG . A MG 301 1_555 G O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4RW5 _atom_sites.fract_transf_matrix[1][1] 0.020096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005653 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 280 MG MG . C 3 PLM A 1 302 1 PLM PLM . D 4 GOL A 1 303 1 GOL GOL . E 5 TDA A 1 304 1 TDA TDA . F 6 OCA A 1 305 1 OCA OCA . G 7 HOH A 1 401 1 HOH HOH . G 7 HOH A 2 402 2 HOH HOH . G 7 HOH A 3 403 3 HOH HOH . G 7 HOH A 4 404 4 HOH HOH . G 7 HOH A 5 405 5 HOH HOH . G 7 HOH A 6 406 6 HOH HOH . G 7 HOH A 7 407 7 HOH HOH . G 7 HOH A 8 408 8 HOH HOH . G 7 HOH A 9 409 9 HOH HOH . G 7 HOH A 10 410 10 HOH HOH . G 7 HOH A 11 411 11 HOH HOH . G 7 HOH A 12 412 12 HOH HOH . G 7 HOH A 13 413 13 HOH HOH . G 7 HOH A 14 414 14 HOH HOH . G 7 HOH A 15 415 15 HOH HOH . G 7 HOH A 16 416 16 HOH HOH . G 7 HOH A 17 417 17 HOH HOH . G 7 HOH A 18 418 18 HOH HOH . G 7 HOH A 19 419 19 HOH HOH . G 7 HOH A 20 420 20 HOH HOH . G 7 HOH A 21 421 21 HOH HOH . G 7 HOH A 22 422 22 HOH HOH . G 7 HOH A 23 423 23 HOH HOH . G 7 HOH A 24 424 24 HOH HOH . G 7 HOH A 25 425 25 HOH HOH . G 7 HOH A 26 426 26 HOH HOH . G 7 HOH A 27 427 27 HOH HOH . G 7 HOH A 28 428 28 HOH HOH . G 7 HOH A 29 429 29 HOH HOH . G 7 HOH A 30 430 30 HOH HOH . G 7 HOH A 31 431 31 HOH HOH . G 7 HOH A 32 432 32 HOH HOH . G 7 HOH A 33 433 33 HOH HOH . G 7 HOH A 34 434 34 HOH HOH . G 7 HOH A 35 435 35 HOH HOH . G 7 HOH A 36 436 36 HOH HOH . G 7 HOH A 37 437 37 HOH HOH . G 7 HOH A 38 438 38 HOH HOH . G 7 HOH A 39 439 40 HOH HOH . G 7 HOH A 40 440 41 HOH HOH . G 7 HOH A 41 441 42 HOH HOH . G 7 HOH A 42 442 43 HOH HOH . G 7 HOH A 43 443 44 HOH HOH . G 7 HOH A 44 444 45 HOH HOH . G 7 HOH A 45 445 46 HOH HOH . G 7 HOH A 46 446 47 HOH HOH . G 7 HOH A 47 447 48 HOH HOH . G 7 HOH A 48 448 49 HOH HOH . G 7 HOH A 49 449 50 HOH HOH . G 7 HOH A 50 450 51 HOH HOH . G 7 HOH A 51 451 52 HOH HOH . G 7 HOH A 52 452 53 HOH HOH . G 7 HOH A 53 453 55 HOH HOH . G 7 HOH A 54 454 56 HOH HOH . G 7 HOH A 55 455 57 HOH HOH . G 7 HOH A 56 456 58 HOH HOH . G 7 HOH A 57 457 59 HOH HOH . G 7 HOH A 58 458 60 HOH HOH . G 7 HOH A 59 459 61 HOH HOH . G 7 HOH A 60 460 62 HOH HOH . G 7 HOH A 61 461 63 HOH HOH . G 7 HOH A 62 462 64 HOH HOH . G 7 HOH A 63 463 65 HOH HOH . G 7 HOH A 64 464 66 HOH HOH . G 7 HOH A 65 465 67 HOH HOH . G 7 HOH A 66 466 68 HOH HOH . G 7 HOH A 67 467 69 HOH HOH . G 7 HOH A 68 468 70 HOH HOH . G 7 HOH A 69 469 71 HOH HOH . G 7 HOH A 70 470 72 HOH HOH . G 7 HOH A 71 471 73 HOH HOH . G 7 HOH A 72 472 74 HOH HOH . G 7 HOH A 73 473 76 HOH HOH . G 7 HOH A 74 474 77 HOH HOH . G 7 HOH A 75 475 78 HOH HOH . G 7 HOH A 76 476 79 HOH HOH . G 7 HOH A 77 477 80 HOH HOH . G 7 HOH A 78 478 81 HOH HOH . G 7 HOH A 79 479 82 HOH HOH . G 7 HOH A 80 480 83 HOH HOH . G 7 HOH A 81 481 84 HOH HOH . G 7 HOH A 82 482 85 HOH HOH . G 7 HOH A 83 483 86 HOH HOH . G 7 HOH A 84 484 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 16.217 -18.778 -7.398 1 53.36 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 4 15.116 -18.956 -6.487 1 52.96 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 4 15.973 -17.802 -8.554 1 47.21 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 4 14.629 -17.949 -9.05 1 57.56 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 4 16.195 -16.347 -8.156 1 48.53 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 4 17.594 -16.032 -8.059 1 51.31 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 139 _model_server_stats.parse_time_ms 346 _model_server_stats.create_model_time_ms 81 _model_server_stats.query_time_ms 1296 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #