data_4RW5 # _model_server_result.job_id tm3RCp6NmOdFf-lnrE0n0g _model_server_result.datetime_utc '2024-11-05 05:01:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rw5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":304}' # _entry.id 4RW5 # _exptl.entry_id 4RW5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 214.344 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-TRIDECANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.71 _cell.angle_gamma 90 _cell.entry_id 4RW5 _cell.length_a 49.761 _cell.length_b 49.341 _cell.length_c 56.152 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RW5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 52 1_555 A SG CYS 80 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 76 A CYS 54 1_555 A SG CYS 219 A CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc1 B MG MG . A MG 301 1_555 F O1 OCA . A OCA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A OE2 GLU 54 A GLU 32 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc3 A OD2 ASP 114 A ASP 92 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 A OD1 ASP 56 A ASP 34 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 B MG MG . A MG 301 1_555 G O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? # _chem_comp.formula 'C13 H26 O2' _chem_comp.formula_weight 214.344 _chem_comp.id TDA _chem_comp.mon_nstd_flag . _chem_comp.name 'N-TRIDECANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RW5 _atom_sites.fract_transf_matrix[1][1] 0.020096 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005653 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020267 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0185 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 301 280 MG MG . C 3 PLM A 1 302 1 PLM PLM . D 4 GOL A 1 303 1 GOL GOL . E 5 TDA A 1 304 1 TDA TDA . F 6 OCA A 1 305 1 OCA OCA . G 7 HOH A 1 401 1 HOH HOH . G 7 HOH A 2 402 2 HOH HOH . G 7 HOH A 3 403 3 HOH HOH . G 7 HOH A 4 404 4 HOH HOH . G 7 HOH A 5 405 5 HOH HOH . G 7 HOH A 6 406 6 HOH HOH . G 7 HOH A 7 407 7 HOH HOH . G 7 HOH A 8 408 8 HOH HOH . G 7 HOH A 9 409 9 HOH HOH . G 7 HOH A 10 410 10 HOH HOH . G 7 HOH A 11 411 11 HOH HOH . G 7 HOH A 12 412 12 HOH HOH . G 7 HOH A 13 413 13 HOH HOH . G 7 HOH A 14 414 14 HOH HOH . G 7 HOH A 15 415 15 HOH HOH . G 7 HOH A 16 416 16 HOH HOH . G 7 HOH A 17 417 17 HOH HOH . G 7 HOH A 18 418 18 HOH HOH . G 7 HOH A 19 419 19 HOH HOH . G 7 HOH A 20 420 20 HOH HOH . G 7 HOH A 21 421 21 HOH HOH . G 7 HOH A 22 422 22 HOH HOH . G 7 HOH A 23 423 23 HOH HOH . G 7 HOH A 24 424 24 HOH HOH . G 7 HOH A 25 425 25 HOH HOH . G 7 HOH A 26 426 26 HOH HOH . G 7 HOH A 27 427 27 HOH HOH . G 7 HOH A 28 428 28 HOH HOH . G 7 HOH A 29 429 29 HOH HOH . G 7 HOH A 30 430 30 HOH HOH . G 7 HOH A 31 431 31 HOH HOH . G 7 HOH A 32 432 32 HOH HOH . G 7 HOH A 33 433 33 HOH HOH . G 7 HOH A 34 434 34 HOH HOH . G 7 HOH A 35 435 35 HOH HOH . G 7 HOH A 36 436 36 HOH HOH . G 7 HOH A 37 437 37 HOH HOH . G 7 HOH A 38 438 38 HOH HOH . G 7 HOH A 39 439 40 HOH HOH . G 7 HOH A 40 440 41 HOH HOH . G 7 HOH A 41 441 42 HOH HOH . G 7 HOH A 42 442 43 HOH HOH . G 7 HOH A 43 443 44 HOH HOH . G 7 HOH A 44 444 45 HOH HOH . G 7 HOH A 45 445 46 HOH HOH . G 7 HOH A 46 446 47 HOH HOH . G 7 HOH A 47 447 48 HOH HOH . G 7 HOH A 48 448 49 HOH HOH . G 7 HOH A 49 449 50 HOH HOH . G 7 HOH A 50 450 51 HOH HOH . G 7 HOH A 51 451 52 HOH HOH . G 7 HOH A 52 452 53 HOH HOH . G 7 HOH A 53 453 55 HOH HOH . G 7 HOH A 54 454 56 HOH HOH . G 7 HOH A 55 455 57 HOH HOH . G 7 HOH A 56 456 58 HOH HOH . G 7 HOH A 57 457 59 HOH HOH . G 7 HOH A 58 458 60 HOH HOH . G 7 HOH A 59 459 61 HOH HOH . G 7 HOH A 60 460 62 HOH HOH . G 7 HOH A 61 461 63 HOH HOH . G 7 HOH A 62 462 64 HOH HOH . G 7 HOH A 63 463 65 HOH HOH . G 7 HOH A 64 464 66 HOH HOH . G 7 HOH A 65 465 67 HOH HOH . G 7 HOH A 66 466 68 HOH HOH . G 7 HOH A 67 467 69 HOH HOH . G 7 HOH A 68 468 70 HOH HOH . G 7 HOH A 69 469 71 HOH HOH . G 7 HOH A 70 470 72 HOH HOH . G 7 HOH A 71 471 73 HOH HOH . G 7 HOH A 72 472 74 HOH HOH . G 7 HOH A 73 473 76 HOH HOH . G 7 HOH A 74 474 77 HOH HOH . G 7 HOH A 75 475 78 HOH HOH . G 7 HOH A 76 476 79 HOH HOH . G 7 HOH A 77 477 80 HOH HOH . G 7 HOH A 78 478 81 HOH HOH . G 7 HOH A 79 479 82 HOH HOH . G 7 HOH A 80 480 83 HOH HOH . G 7 HOH A 81 481 84 HOH HOH . G 7 HOH A 82 482 85 HOH HOH . G 7 HOH A 83 483 86 HOH HOH . G 7 HOH A 84 484 87 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O21 TDA . . . E 5 5.871 -26.818 12.68 1 62.21 ? O21 TDA 304 A 1 HETATM 2 O O22 TDA . . . E 5 7.906 -26.217 12.11 1 64.37 ? O22 TDA 304 A 1 HETATM 3 C C21 TDA . . . E 5 6.742 -26.593 11.827 1 66.49 ? C21 TDA 304 A 1 HETATM 4 C C22 TDA . . . E 5 6.352 -26.769 10.392 1 62.03 ? C22 TDA 304 A 1 HETATM 5 C C23 TDA . . . E 5 7.422 -26.242 9.456 1 60.92 ? C23 TDA 304 A 1 HETATM 6 C C24 TDA . . . E 5 6.963 -24.974 8.781 1 62.98 ? C24 TDA 304 A 1 HETATM 7 C C25 TDA . . . E 5 5.617 -25.196 8.128 1 65.36 ? C25 TDA 304 A 1 HETATM 8 C C26 TDA . . . E 5 4.86 -23.905 8.163 1 61.08 ? C26 TDA 304 A 1 HETATM 9 C C27 TDA . . . E 5 5.597 -22.886 7.326 1 62.2 ? C27 TDA 304 A 1 HETATM 10 C C28 TDA . . . E 5 5.72 -21.616 8.122 1 55.38 ? C28 TDA 304 A 1 HETATM 11 C C29 TDA . . . E 5 4.453 -20.808 8.176 1 52.98 ? C29 TDA 304 A 1 HETATM 12 C C30 TDA . . . E 5 4.598 -19.768 9.274 1 49.27 ? C30 TDA 304 A 1 HETATM 13 C C31 TDA . . . E 5 3.548 -19.642 10.361 1 38.81 ? C31 TDA 304 A 1 HETATM 14 C C32 TDA . . . E 5 2.227 -19.197 9.822 1 46.83 ? C32 TDA 304 A 1 HETATM 15 C C33 TDA . . . E 5 1.129 -19.532 10.791 1 46.11 ? C33 TDA 304 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 15 #