data_4RW8 # _model_server_result.job_id iorm-Z0-hp500c8tUFjMcw _model_server_result.datetime_utc '2025-01-11 11:57:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4RW8 # _exptl.entry_id 4RW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.822 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-3-(3-chloro-5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.29 _cell.angle_gamma 90 _cell.entry_id 4RW8 _cell.length_a 224.82 _cell.length_b 69.048 _cell.length_c 104.337 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 Cl N3 O4' _chem_comp.formula_weight 409.822 _chem_comp.id 3X6 _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-3-(3-chloro-5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C10 3X6 doub 1 n n C0P C0O 3X6 sing 2 n n C0P N0S 3X6 sing 3 n n C10 N0S 3X6 sing 4 n n C10 N11 3X6 sing 5 n n C0O O0B 3X6 sing 6 n n N0S C14 3X6 sing 7 n n N11 C12 3X6 sing 8 n n C14 C13 3X6 doub 9 n n O0B C05 3X6 sing 10 n n C00 C05 3X6 doub 11 n y C00 C01 3X6 sing 12 n y C12 C13 3X6 sing 13 n n C12 O17 3X6 doub 14 n n C05 C04 3X6 sing 15 n y C01 C02 3X6 doub 16 n y C04 O0A 3X6 sing 17 n n C04 C03 3X6 doub 18 n y C02 C03 3X6 sing 19 n y O0A C0C 3X6 sing 20 n n C0D C0C 3X6 doub 21 n y C0D C0E 3X6 sing 22 n y C0C C0H 3X6 sing 23 n y CL1 C0E 3X6 sing 24 n n C0E C0F 3X6 doub 25 n y C0H C0G 3X6 doub 26 n y C0F C0G 3X6 sing 27 n y C0G C0M 3X6 sing 28 n n C0M C0V 3X6 doub 29 e n C0V C0X 3X6 sing 30 n n C0X N0Z 3X6 trip 31 n n C13 H1 3X6 sing 32 n n C14 H2 3X6 sing 33 n n C00 H3 3X6 sing 34 n n C01 H4 3X6 sing 35 n n C02 H5 3X6 sing 36 n n C03 H6 3X6 sing 37 n n C0D H7 3X6 sing 38 n n C0F H8 3X6 sing 39 n n C0H H9 3X6 sing 40 n n C0M H10 3X6 sing 41 n n C0V H11 3X6 sing 42 n n C0O H12 3X6 sing 43 n n C0O H13 3X6 sing 44 n n C0P H14 3X6 sing 45 n n C0P H15 3X6 sing 46 n n N11 H16 3X6 sing 47 n n # _atom_sites.entry_id 4RW8 _atom_sites.fract_transf_matrix[1][1] 0.004448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.0013 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009985 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 3X6 A 1 601 1 3X6 532 . D 4 HOH A 1 701 2 HOH HOH . D 4 HOH A 2 702 8 HOH HOH . D 4 HOH A 3 703 9 HOH HOH . D 4 HOH A 4 704 10 HOH HOH . D 4 HOH A 5 705 19 HOH HOH . D 4 HOH A 6 706 20 HOH HOH . D 4 HOH A 7 707 26 HOH HOH . D 4 HOH A 8 708 28 HOH HOH . E 4 HOH B 1 501 1 HOH HOH . E 4 HOH B 2 502 3 HOH HOH . E 4 HOH B 3 503 4 HOH HOH . E 4 HOH B 4 504 5 HOH HOH . E 4 HOH B 5 505 6 HOH HOH . E 4 HOH B 6 506 14 HOH HOH . E 4 HOH B 7 507 15 HOH HOH . E 4 HOH B 8 508 17 HOH HOH . E 4 HOH B 9 509 22 HOH HOH . E 4 HOH B 10 510 24 HOH HOH . E 4 HOH B 11 511 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 3X6 . B . C 3 239.743 -28.571 121.763 1 65.39 ? C10 3X6 601 A 1 HETATM 2 C C12 3X6 . B . C 3 240.918 -29.468 123.709 1 74.84 ? C12 3X6 601 A 1 HETATM 3 C C13 3X6 . B . C 3 240.63 -28.219 124.421 1 61.84 ? C13 3X6 601 A 1 HETATM 4 C C14 3X6 . B . C 3 239.936 -27.238 123.79 1 55.57 ? C14 3X6 601 A 1 HETATM 5 C C00 3X6 . . . C 3 241.703 -23.766 119.876 1 56.7 ? C00 3X6 601 A 1 HETATM 6 C C01 3X6 . . . C 3 242.864 -23.221 119.287 1 57.31 ? C01 3X6 601 A 1 HETATM 7 C C02 3X6 . . . C 3 244.033 -23.049 120.062 1 60.91 ? C02 3X6 601 A 1 HETATM 8 C C03 3X6 . . . C 3 244.037 -23.421 121.426 1 59.75 ? C03 3X6 601 A 1 HETATM 9 C C04 3X6 . . . C 3 242.875 -23.974 122.032 1 55.03 ? C04 3X6 601 A 1 HETATM 10 C C05 3X6 . . . C 3 241.7 -24.147 121.248 1 53.76 ? C05 3X6 601 A 1 HETATM 11 O O0A 3X6 . . . C 3 242.856 -24.344 123.369 1 53.48 ? O0A 3X6 601 A 1 HETATM 12 C C0C 3X6 . . . C 3 242.783 -23.379 124.362 1 59.23 ? C0C 3X6 601 A 1 HETATM 13 C C0D 3X6 . . . C 3 242.154 -22.123 124.149 1 69.17 ? C0D 3X6 601 A 1 HETATM 14 C C0E 3X6 . . . C 3 242.097 -21.166 125.179 1 65.64 ? C0E 3X6 601 A 1 HETATM 15 C C0F 3X6 . . . C 3 242.665 -21.448 126.44 1 67.12 ? C0F 3X6 601 A 1 HETATM 16 C C0G 3X6 . . . C 3 243.31 -22.689 126.704 1 63.11 ? C0G 3X6 601 A 1 HETATM 17 C C0H 3X6 . . . C 3 243.351 -23.645 125.64 1 56.42 ? C0H 3X6 601 A 1 HETATM 18 CL CL1 3X6 . . . C 3 241.326 -19.654 124.885 1 79.68 ? CL1 3X6 601 A 1 HETATM 19 C C0M 3X6 . . . C 3 243.856 -22.887 128.034 1 61.75 ? C0M 3X6 601 A 1 HETATM 20 C C0V 3X6 . . . C 3 244.792 -23.806 128.346 1 61.92 ? C0V 3X6 601 A 1 HETATM 21 C C0X 3X6 . . . C 3 245.397 -23.765 129.63 1 67.71 ? C0X 3X6 601 A 1 HETATM 22 N N0Z 3X6 . . . C 3 245.914 -23.781 130.661 1 62.48 ? N0Z 3X6 601 A 1 HETATM 23 O O0B 3X6 . B . C 3 240.577 -24.679 121.85 1 56.31 ? O0B 3X6 601 A 1 HETATM 24 C C0O 3X6 . B . C 3 239.7 -25.426 121.008 1 55.74 ? C0O 3X6 601 A 1 HETATM 25 C C0P 3X6 . B . C 3 238.745 -26.28 121.861 1 61.71 ? C0P 3X6 601 A 1 HETATM 26 N N0S 3X6 . B . C 3 239.487 -27.412 122.452 1 63.83 ? N0S 3X6 601 A 1 HETATM 27 N N11 3X6 . B . C 3 240.441 -29.52 122.438 1 72.25 ? N11 3X6 601 A 1 HETATM 28 O O15 3X6 . B . C 3 239.376 -28.766 120.605 1 68.22 ? O15 3X6 601 A 1 HETATM 29 O O17 3X6 . B . C 3 241.538 -30.405 124.201 1 78.52 ? O17 3X6 601 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 29 #