data_4RW9 # _model_server_result.job_id minAovPJtoAyfHC1wxDsSw _model_server_result.datetime_utc '2025-01-11 12:42:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rw9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 4RW9 # _exptl.entry_id 4RW9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 409.822 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2E)-3-(3-chloro-5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.69 _cell.angle_gamma 90 _cell.entry_id 4RW9 _cell.length_a 161.416 _cell.length_b 74.026 _cell.length_c 108.102 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RW9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 Cl N3 O4' _chem_comp.formula_weight 409.822 _chem_comp.id 3X6 _chem_comp.mon_nstd_flag . _chem_comp.name (2E)-3-(3-chloro-5-{2-[2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy]phenoxy}phenyl)prop-2-enenitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 C10 3X6 doub 1 n n C0P C0O 3X6 sing 2 n n C0P N0S 3X6 sing 3 n n C10 N0S 3X6 sing 4 n n C10 N11 3X6 sing 5 n n C0O O0B 3X6 sing 6 n n N0S C14 3X6 sing 7 n n N11 C12 3X6 sing 8 n n C14 C13 3X6 doub 9 n n O0B C05 3X6 sing 10 n n C00 C05 3X6 doub 11 n y C00 C01 3X6 sing 12 n y C12 C13 3X6 sing 13 n n C12 O17 3X6 doub 14 n n C05 C04 3X6 sing 15 n y C01 C02 3X6 doub 16 n y C04 O0A 3X6 sing 17 n n C04 C03 3X6 doub 18 n y C02 C03 3X6 sing 19 n y O0A C0C 3X6 sing 20 n n C0D C0C 3X6 doub 21 n y C0D C0E 3X6 sing 22 n y C0C C0H 3X6 sing 23 n y CL1 C0E 3X6 sing 24 n n C0E C0F 3X6 doub 25 n y C0H C0G 3X6 doub 26 n y C0F C0G 3X6 sing 27 n y C0G C0M 3X6 sing 28 n n C0M C0V 3X6 doub 29 e n C0V C0X 3X6 sing 30 n n C0X N0Z 3X6 trip 31 n n C13 H1 3X6 sing 32 n n C14 H2 3X6 sing 33 n n C00 H3 3X6 sing 34 n n C01 H4 3X6 sing 35 n n C02 H5 3X6 sing 36 n n C03 H6 3X6 sing 37 n n C0D H7 3X6 sing 38 n n C0F H8 3X6 sing 39 n n C0H H9 3X6 sing 40 n n C0M H10 3X6 sing 41 n n C0V H11 3X6 sing 42 n n C0O H12 3X6 sing 43 n n C0O H13 3X6 sing 44 n n C0P H14 3X6 sing 45 n n C0P H15 3X6 sing 46 n n N11 H16 3X6 sing 47 n n # _atom_sites.entry_id 4RW9 _atom_sites.fract_transf_matrix[1][1] 0.006195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009384 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id 3X6 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 601 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id 3X6 _pdbx_nonpoly_scheme.auth_mon_id 532 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 3X6 . . . C 3 213.019 -42.955 31.882 1 37.22 ? C10 3X6 601 A 1 HETATM 2 C C12 3X6 . . . C 3 211.963 -44.237 33.674 1 40.69 ? C12 3X6 601 A 1 HETATM 3 C C13 3X6 . . . C 3 211.128 -43.067 33.972 1 42.62 ? C13 3X6 601 A 1 HETATM 4 C C14 3X6 . . . C 3 211.272 -41.934 33.237 1 34.12 ? C14 3X6 601 A 1 HETATM 5 C C00 3X6 . . . C 3 215.502 -38.54 33.478 1 24.88 ? C00 3X6 601 A 1 HETATM 6 C C01 3X6 . . . C 3 216.567 -38.056 34.269 1 29.87 ? C01 3X6 601 A 1 HETATM 7 C C02 3X6 . . . C 3 216.498 -38.098 35.68 1 28.31 ? C02 3X6 601 A 1 HETATM 8 C C03 3X6 . . . C 3 215.349 -38.631 36.308 1 28.79 ? C03 3X6 601 A 1 HETATM 9 C C04 3X6 . . . C 3 214.263 -39.125 35.531 1 28.54 ? C04 3X6 601 A 1 HETATM 10 C C05 3X6 . . . C 3 214.347 -39.079 34.112 1 28.17 ? C05 3X6 601 A 1 HETATM 11 O O0A 3X6 . . . C 3 213.115 -39.664 36.1 1 31.52 ? O0A 3X6 601 A 1 HETATM 12 C C0C 3X6 . . . C 3 212.206 -38.89 36.803 1 27.67 ? C0C 3X6 601 A 1 HETATM 13 C C0D 3X6 . . . C 3 212.11 -37.485 36.641 1 39.91 ? C0D 3X6 601 A 1 HETATM 14 C C0E 3X6 . . . C 3 211.168 -36.753 37.383 1 45.07 ? C0E 3X6 601 A 1 HETATM 15 C C0F 3X6 . . . C 3 210.308 -37.409 38.293 1 43.6 ? C0F 3X6 601 A 1 HETATM 16 C C0G 3X6 . . . C 3 210.366 -38.816 38.493 1 38.42 ? C0G 3X6 601 A 1 HETATM 17 C C0H 3X6 . . . C 3 211.333 -39.532 37.725 1 28.86 ? C0H 3X6 601 A 1 HETATM 18 CL CL1 3X6 . . . C 3 211.057 -35.05 37.185 1 49.92 ? CL1 3X6 601 A 1 HETATM 19 C C0M 3X6 . . . C 3 209.433 -39.386 39.438 1 42.04 ? C0M 3X6 601 A 1 HETATM 20 C C0V 3X6 . . . C 3 209.66 -40.534 40.106 1 40.96 ? C0V 3X6 601 A 1 HETATM 21 C C0X 3X6 . . . C 3 208.944 -40.933 41.264 1 44 ? C0X 3X6 601 A 1 HETATM 22 N N0Z 3X6 . . . C 3 208.365 -41.266 42.207 1 45.41 ? N0Z 3X6 601 A 1 HETATM 23 O O0B 3X6 . . . C 3 213.27 -39.563 33.399 1 33.56 ? O0B 3X6 601 A 1 HETATM 24 C C0O 3X6 . . . C 3 213.473 -39.781 32.007 1 35.34 ? C0O 3X6 601 A 1 HETATM 25 C C0P 3X6 . . . C 3 212.307 -40.606 31.446 1 35.44 ? C0P 3X6 601 A 1 HETATM 26 N N0S 3X6 . . . C 3 212.223 -41.879 32.184 1 33.72 ? N0S 3X6 601 A 1 HETATM 27 N N11 3X6 . . . C 3 212.835 -44.064 32.647 1 39.64 ? N11 3X6 601 A 1 HETATM 28 O O15 3X6 . . . C 3 213.853 -42.941 30.978 1 34.45 ? O15 3X6 601 A 1 HETATM 29 O O17 3X6 . . . C 3 211.896 -45.296 34.289 1 36.16 ? O17 3X6 601 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #