data_4RWB # _model_server_result.job_id xZ8Ub7qCzHpm_FFxhLTQEw _model_server_result.datetime_utc '2025-01-10 11:06:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":102}' # _entry.id 4RWB # _exptl.entry_id 4RWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.68 _cell.angle_gamma 90 _cell.entry_id 4RWB _cell.length_a 40.93 _cell.length_b 41.23 _cell.length_c 27.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 14 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21/c 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 24 1_555 A N PRO 2 A PRO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C LEU 23 A LEU 46 1_555 A N NH2 24 A NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C ACE 1 B ACE 24 1_555 B N PRO 2 B PRO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C LEU 23 B LEU 46 1_555 B N NH2 24 B NH2 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id MPG _chem_comp.mon_nstd_flag . _chem_comp.name '[(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 MPG sing 134 n n C2 C1 MPG sing 135 n n C3 C4 MPG sing 136 n n C4 C5 MPG sing 137 n n C5 C6 MPG sing 138 n n C6 C7 MPG sing 139 n n C7 C8 MPG sing 140 n n C8 C9 MPG sing 141 n n C9 C10 MPG doub 142 z n C10 C11 MPG sing 143 n n C11 C12 MPG sing 144 n n C12 C13 MPG sing 145 n n C13 C14 MPG sing 146 n n C14 C15 MPG sing 147 n n C15 C16 MPG sing 148 n n C16 C17 MPG sing 149 n n C17 C18 MPG sing 150 n n O1 C1 MPG sing 151 n n O1 CX3 MPG sing 152 n n CXD O2 MPG sing 153 n n CXD C21 MPG sing 154 n n CXD CX3 MPG sing 155 n n C21 O3 MPG sing 156 n n C2 H21C MPG sing 157 n n C2 H22C MPG sing 158 n n C3 H31C MPG sing 159 n n C3 H32C MPG sing 160 n n CX3 O4 MPG doub 161 n n C4 H41C MPG sing 162 n n C4 H42C MPG sing 163 n n C5 H51C MPG sing 164 n n C5 H52C MPG sing 165 n n C6 H61C MPG sing 166 n n C6 H62C MPG sing 167 n n C7 H71C MPG sing 168 n n C7 H72C MPG sing 169 n n C8 H81C MPG sing 170 n n C8 H82C MPG sing 171 n n C9 H9 MPG sing 172 n n C10 H10 MPG sing 173 n n C11 H111 MPG sing 174 n n C11 H112 MPG sing 175 n n C12 H121 MPG sing 176 n n C12 H122 MPG sing 177 n n C13 H131 MPG sing 178 n n C13 H132 MPG sing 179 n n C14 H141 MPG sing 180 n n C14 H142 MPG sing 181 n n C15 H151 MPG sing 182 n n C15 H152 MPG sing 183 n n C16 H161 MPG sing 184 n n C16 H162 MPG sing 185 n n C17 H171 MPG sing 186 n n C17 H172 MPG sing 187 n n C18 H181 MPG sing 188 n n C18 H182 MPG sing 189 n n C18 H183 MPG sing 190 n n C1 HX31 MPG sing 191 n n C1 HX32 MPG sing 192 n n CXD HXD MPG sing 193 n n O2 H2 MPG sing 194 n n C21 H211 MPG sing 195 n n C21 H212 MPG sing 196 n n O3 H3 MPG sing 197 n n # _atom_sites.entry_id 4RWB _atom_sites.fract_transf_matrix[1][1] 0.024432 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002429 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024254 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MPG A 1 101 1 MPG MPG . D 2 MPG A 1 102 2 MPG MPG . E 2 MPG B 1 101 3 MPG MPG . F 3 HOH A 1 201 2 HOH HOH . G 3 HOH B 1 201 1 HOH HOH . G 3 HOH B 2 202 3 HOH HOH . G 3 HOH B 3 203 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 MPG . . . D 2 -3.821 4.875 9.184 1 44.6 ? C2 MPG 102 A 1 HETATM 2 C C3 MPG . . . D 2 -2.752 5.117 8.15 1 41 ? C3 MPG 102 A 1 HETATM 3 C C4 MPG . . . D 2 -1.438 5.557 8.793 1 39.29 ? C4 MPG 102 A 1 HETATM 4 C C5 MPG . . . D 2 -0.331 4.657 8.324 1 36.78 ? C5 MPG 102 A 1 HETATM 5 C C6 MPG . . . D 2 0.949 4.979 9.055 1 38.56 ? C6 MPG 102 A 1 HETATM 6 C C7 MPG . . . D 2 1.902 5.744 8.18 1 39.22 ? C7 MPG 102 A 1 HETATM 7 C C8 MPG . . . D 2 3.139 5.978 9.04 1 43.73 ? C8 MPG 102 A 1 HETATM 8 C C9 MPG . . . D 2 4.402 5.692 8.261 1 49.21 ? C9 MPG 102 A 1 HETATM 9 C C10 MPG . . . D 2 5.574 6.176 8.691 1 48.8 ? C10 MPG 102 A 1 HETATM 10 C C11 MPG . . . D 2 6.85 5.905 7.921 1 45.9 ? C11 MPG 102 A 1 HETATM 11 C C12 MPG . . . D 2 7.944 5.85 8.969 1 46.33 ? C12 MPG 102 A 1 HETATM 12 C C13 MPG . . . D 2 9.315 5.788 8.346 1 44.96 ? C13 MPG 102 A 1 HETATM 13 C C14 MPG . . . D 2 10.295 5.591 9.46 1 44.14 ? C14 MPG 102 A 1 HETATM 14 C C15 MPG . . . D 2 10.603 6.906 10.16 1 47.24 ? C15 MPG 102 A 1 HETATM 15 C C16 MPG . . . D 2 12.047 7.332 9.856 1 49.52 ? C16 MPG 102 A 1 HETATM 16 C C17 MPG . . . D 2 12.698 8.192 10.948 1 52.19 ? C17 MPG 102 A 1 HETATM 17 C C18 MPG . . . D 2 14.199 8.284 10.71 1 50.33 ? C18 MPG 102 A 1 HETATM 18 O O1 MPG . . . D 2 -6.204 4.513 8.967 1 56.28 ? O1 MPG 102 A 1 HETATM 19 C C1 MPG . . . D 2 -4.921 4.001 8.613 1 48.62 ? C1 MPG 102 A 1 HETATM 20 C CXD MPG . . . D 2 -8.41 4.744 7.626 1 72.21 ? CXD MPG 102 A 1 HETATM 21 O O2 MPG . . . D 2 -8.631 5.94 8.376 1 81.32 ? O2 MPG 102 A 1 HETATM 22 C C21 MPG . . . D 2 -9.759 4.048 7.395 1 74.37 ? C21 MPG 102 A 1 HETATM 23 O O3 MPG . . . D 2 -10.712 4.954 6.791 1 75.99 ? O3 MPG 102 A 1 HETATM 24 O O4 MPG . . . D 2 -7.473 2.7 8.399 1 68.39 ? O4 MPG 102 A 1 HETATM 25 C CX3 MPG . . . D 2 -7.377 3.909 8.345 1 63.55 ? CX3 MPG 102 A 1 HETATM 26 H H21C MPG . . . D 2 -3.391 4.384 10.059 1 44.61 ? H21C MPG 102 A 1 HETATM 27 H H22C MPG . . . D 2 -4.238 5.833 9.498 1 44.66 ? H22C MPG 102 A 1 HETATM 28 H H31C MPG . . . D 2 -3.095 5.895 7.466 1 41.2 ? H31C MPG 102 A 1 HETATM 29 H H32C MPG . . . D 2 -2.594 4.208 7.565 1 41.38 ? H32C MPG 102 A 1 HETATM 30 H H41C MPG . . . D 2 -1.514 5.519 9.882 1 39.11 ? H41C MPG 102 A 1 HETATM 31 H H42C MPG . . . D 2 -1.217 6.588 8.506 1 39.08 ? H42C MPG 102 A 1 HETATM 32 H H51C MPG . . . D 2 -0.191 4.778 7.248 1 37.79 ? H51C MPG 102 A 1 HETATM 33 H H52C MPG . . . D 2 -0.599 3.616 8.514 1 37.79 ? H52C MPG 102 A 1 HETATM 34 H H61C MPG . . . D 2 1.416 4.042 9.367 1 38.32 ? H61C MPG 102 A 1 HETATM 35 H H62C MPG . . . D 2 0.738 5.56 9.955 1 38.32 ? H62C MPG 102 A 1 HETATM 36 H H71C MPG . . . D 2 1.462 6.697 7.878 1 40.09 ? H71C MPG 102 A 1 HETATM 37 H H72C MPG . . . D 2 2.143 5.166 7.285 1 40.14 ? H72C MPG 102 A 1 HETATM 38 H H81C MPG . . . D 2 3.118 5.346 9.93 1 43.75 ? H81C MPG 102 A 1 HETATM 39 H H82C MPG . . . D 2 3.152 7.017 9.373 1 43.81 ? H82C MPG 102 A 1 HETATM 40 H H9 MPG . . . D 2 4.364 5.113 7.354 1 47.71 ? H9 MPG 102 A 1 HETATM 41 H H10 MPG . . . D 2 5.602 6.752 9.598 1 48.27 ? H10 MPG 102 A 1 HETATM 42 H H111 MPG . . . D 2 6.782 4.955 7.386 1 46.67 ? H111 MPG 102 A 1 HETATM 43 H H112 MPG . . . D 2 7.044 6.705 7.205 1 46.67 ? H112 MPG 102 A 1 HETATM 44 H H121 MPG . . . D 2 7.874 6.73 9.61 1 45.93 ? H121 MPG 102 A 1 HETATM 45 H H122 MPG . . . D 2 7.785 4.969 9.595 1 45.9 ? H122 MPG 102 A 1 HETATM 46 H H131 MPG . . . D 2 9.367 4.951 7.651 1 45.08 ? H131 MPG 102 A 1 HETATM 47 H H132 MPG . . . D 2 9.531 6.71 7.801 1 45.1 ? H132 MPG 102 A 1 HETATM 48 H H141 MPG . . . D 2 9.897 4.881 10.189 1 45.06 ? H141 MPG 102 A 1 HETATM 49 H H142 MPG . . . D 2 11.206 5.152 9.049 1 45.08 ? H142 MPG 102 A 1 HETATM 50 H H151 MPG . . . D 2 9.914 7.692 9.846 1 46.99 ? H151 MPG 102 A 1 HETATM 51 H H152 MPG . . . D 2 10.502 6.772 11.236 1 47.02 ? H152 MPG 102 A 1 HETATM 52 H H161 MPG . . . D 2 12.668 6.446 9.716 1 49.51 ? H161 MPG 102 A 1 HETATM 53 H H162 MPG . . . D 2 12.063 7.884 8.918 1 49.35 ? H162 MPG 102 A 1 HETATM 54 H H171 MPG . . . D 2 12.262 9.193 10.937 1 51.11 ? H171 MPG 102 A 1 HETATM 55 H H172 MPG . . . D 2 12.51 7.75 11.928 1 51.09 ? H172 MPG 102 A 1 HETATM 56 H H181 MPG . . . D 2 14.633 8.914 11.441 1 50.9 ? H181 MPG 102 A 1 HETATM 57 H H182 MPG . . . D 2 14.38 8.684 9.747 1 50.9 ? H182 MPG 102 A 1 HETATM 58 H H183 MPG . . . D 2 14.627 7.318 10.778 1 50.89 ? H183 MPG 102 A 1 HETATM 59 H HX31 MPG . . . D 2 -4.844 3.959 7.524 1 49.07 ? HX31 MPG 102 A 1 HETATM 60 H HX32 MPG . . . D 2 -4.815 2.985 8.997 1 49.27 ? HX32 MPG 102 A 1 HETATM 61 H HXD MPG . . . D 2 -8.011 5 6.642 1 72.49 ? HXD MPG 102 A 1 HETATM 62 H H2 MPG . . . D 2 -8.986 5.631 9.202 0 79.79 ? H2 MPG 102 A 1 HETATM 63 H H211 MPG . . . D 2 -9.617 3.181 6.746 1 74.06 ? H211 MPG 102 A 1 HETATM 64 H H212 MPG . . . D 2 -10.151 3.692 8.349 1 73.36 ? H212 MPG 102 A 1 HETATM 65 H H3 MPG . . . D 2 -10.29 5.708 6.917 0 75.81 ? H3 MPG 102 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 65 #