data_4RWT # _model_server_result.job_id nE1XnJPgBC7jKqJFgH_NAw _model_server_result.datetime_utc '2024-10-13 00:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rwt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 4RWT # _exptl.entry_id 4RWT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 101.29 _cell.angle_beta 90.94 _cell.angle_gamma 107.97 _cell.entry_id 4RWT _cell.length_a 65.35 _cell.length_b 65.65 _cell.length_c 81.92 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RWT _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F 1 1 B,D,G,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E O2G ANP . A ANP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc2 E O1B ANP . A ANP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc3 E O3G ANP . A ANP 401 1_555 F MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? metalc ? metalc4 D OE1 GLN 138 B GLN 137 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc5 G O2G ANP . B ANP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 G O1B ANP . B ANP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc7 G O3G ANP . B ANP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.866 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 4RWT _atom_sites.fract_transf_matrix[1][1] 0.015302 _atom_sites.fract_transf_matrix[1][2] 0.004963 _atom_sites.fract_transf_matrix[1][3] 0.001329 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016013 _atom_sites.fract_transf_matrix[2][3] 0.003459 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01249 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ANP A 1 401 1380 ANP ANP . F 4 MG A 1 402 1500 MG MG . G 3 ANP B 1 401 1380 ANP ANP . H 4 MG B 1 402 1500 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 3 -19.761 -31.377 -44.105 1 53.56 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . E 3 -19.26 -32.241 -45.239 1 43.04 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . E 3 -20.463 -30.101 -44.534 1 43.55 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . E 3 -20.532 -32.159 -43.062 1 36.15 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . E 3 -18.483 -29.827 -41.884 1 52.07 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . E 3 -19.958 -29.568 -41.702 1 36.2 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . E 3 -17.764 -30.523 -40.745 1 39.86 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . E 3 -18.312 -30.825 -43.306 1 44.33 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . E 3 -18.242 -26.925 -42.149 1 55.48 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . E 3 -18.786 -26.569 -43.503 1 40.87 ? O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . E 3 -19.115 -26.715 -40.937 1 35.05 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . E 3 -17.672 -28.448 -42.169 1 57.24 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . E 3 -16.915 -26.021 -41.957 1 59.71 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . E 3 -15.689 -26.272 -42.664 1 52.39 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . E 3 -15.251 -25.058 -43.493 1 47.78 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . E 3 -15.872 -23.868 -43 1 41.2 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . E 3 -13.734 -24.812 -43.49 1 45.88 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . E 3 -13.153 -24.823 -44.812 1 39.37 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . E 3 -13.585 -23.435 -42.878 1 47.2 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . E 3 -12.499 -22.735 -43.497 1 47.02 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . E 3 -14.941 -22.805 -43.173 1 47.31 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . E 3 -15.308 -21.621 -42.343 1 51.45 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . E 3 -15.602 -21.604 -41.02 1 46.96 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . E 3 -15.907 -20.348 -40.595 1 42.28 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . E 3 -15.818 -19.534 -41.67 1 45.31 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . E 3 -16.004 -18.094 -41.926 1 39.25 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . E 3 -16.361 -17.266 -40.923 1 43.06 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . E 3 -15.815 -17.633 -43.188 1 34.05 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . E 3 -15.458 -18.455 -44.194 1 37.68 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . E 3 -15.263 -19.778 -44.042 1 42.82 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . E 3 -15.429 -20.365 -42.818 1 47.27 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #