data_4RX0 # _model_server_result.job_id KD1ytoBLT-Hl2SY1lFMTHA _model_server_result.datetime_utc '2024-11-29 23:16:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rx0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 4RX0 # _exptl.entry_id 4RX0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RX0 _cell.length_a 85.933 _cell.length_b 85.933 _cell.length_c 138.425 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RX0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 124 n n N1 C10 FMN doub 125 n n C2 O2 FMN doub 126 n n C2 N3 FMN sing 127 n n N3 C4 FMN sing 128 n n N3 HN3 FMN sing 129 n n C4 O4 FMN doub 130 n n C4 C4A FMN sing 131 n n C4A N5 FMN doub 132 n n C4A C10 FMN sing 133 n n N5 C5A FMN sing 134 n n C5A C6 FMN doub 135 n y C5A C9A FMN sing 136 n y C6 C7 FMN sing 137 n y C6 H6 FMN sing 138 n n C7 C7M FMN sing 139 n n C7 C8 FMN doub 140 n y C7M HM71 FMN sing 141 n n C7M HM72 FMN sing 142 n n C7M HM73 FMN sing 143 n n C8 C8M FMN sing 144 n n C8 C9 FMN sing 145 n y C8M HM81 FMN sing 146 n n C8M HM82 FMN sing 147 n n C8M HM83 FMN sing 148 n n C9 C9A FMN doub 149 n y C9 H9 FMN sing 150 n n C9A N10 FMN sing 151 n n N10 C10 FMN sing 152 n n N10 C1' FMN sing 153 n n C1' C2' FMN sing 154 n n C1' "H1'1" FMN sing 155 n n C1' "H1'2" FMN sing 156 n n C2' O2' FMN sing 157 n n C2' C3' FMN sing 158 n n C2' H2' FMN sing 159 n n O2' HO2' FMN sing 160 n n C3' O3' FMN sing 161 n n C3' C4' FMN sing 162 n n C3' H3' FMN sing 163 n n O3' HO3' FMN sing 164 n n C4' O4' FMN sing 165 n n C4' C5' FMN sing 166 n n C4' H4' FMN sing 167 n n O4' HO4' FMN sing 168 n n C5' O5' FMN sing 169 n n C5' "H5'1" FMN sing 170 n n C5' "H5'2" FMN sing 171 n n O5' P FMN sing 172 n n P O1P FMN doub 173 n n P O2P FMN sing 174 n n P O3P FMN sing 175 n n O2P HOP2 FMN sing 176 n n O3P HOP3 FMN sing 177 n n # _atom_sites.entry_id 4RX0 _atom_sites.fract_transf_matrix[1][1] 0.011637 _atom_sites.fract_transf_matrix[1][2] 0.006719 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013437 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007224 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D65 A 1 1001 1001 D65 D65 . C 3 FMN A 1 1002 1002 FMN FMN . D 4 ORO A 1 1003 1003 ORO ORO . E 5 GOL A 1 1004 1 GOL GOL . F 6 HOH A 1 1101 1 HOH HOH . F 6 HOH A 2 1102 2 HOH HOH . F 6 HOH A 3 1103 3 HOH HOH . F 6 HOH A 4 1104 4 HOH HOH . F 6 HOH A 5 1105 5 HOH HOH . F 6 HOH A 6 1106 6 HOH HOH . F 6 HOH A 7 1107 7 HOH HOH . F 6 HOH A 8 1108 8 HOH HOH . F 6 HOH A 9 1109 9 HOH HOH . F 6 HOH A 10 1110 10 HOH HOH . F 6 HOH A 11 1111 11 HOH HOH . F 6 HOH A 12 1112 12 HOH HOH . F 6 HOH A 13 1113 13 HOH HOH . F 6 HOH A 14 1114 14 HOH HOH . F 6 HOH A 15 1115 15 HOH HOH . F 6 HOH A 16 1116 16 HOH HOH . F 6 HOH A 17 1117 17 HOH HOH . F 6 HOH A 18 1118 18 HOH HOH . F 6 HOH A 19 1119 19 HOH HOH . F 6 HOH A 20 1120 20 HOH HOH . F 6 HOH A 21 1121 21 HOH HOH . F 6 HOH A 22 1122 22 HOH HOH . F 6 HOH A 23 1123 23 HOH HOH . F 6 HOH A 24 1124 24 HOH HOH . F 6 HOH A 25 1125 25 HOH HOH . F 6 HOH A 26 1126 26 HOH HOH . F 6 HOH A 27 1127 27 HOH HOH . F 6 HOH A 28 1128 28 HOH HOH . F 6 HOH A 29 1129 29 HOH HOH . F 6 HOH A 30 1130 30 HOH HOH . F 6 HOH A 31 1131 31 HOH HOH . F 6 HOH A 32 1132 32 HOH HOH . F 6 HOH A 33 1133 33 HOH HOH . F 6 HOH A 34 1134 34 HOH HOH . F 6 HOH A 35 1135 35 HOH HOH . F 6 HOH A 36 1136 36 HOH HOH . F 6 HOH A 37 1137 37 HOH HOH . F 6 HOH A 38 1138 38 HOH HOH . F 6 HOH A 39 1139 39 HOH HOH . F 6 HOH A 40 1140 40 HOH HOH . F 6 HOH A 41 1141 41 HOH HOH . F 6 HOH A 42 1142 42 HOH HOH . F 6 HOH A 43 1143 43 HOH HOH . F 6 HOH A 44 1144 44 HOH HOH . F 6 HOH A 45 1145 45 HOH HOH . F 6 HOH A 46 1146 46 HOH HOH . F 6 HOH A 47 1147 47 HOH HOH . F 6 HOH A 48 1148 48 HOH HOH . F 6 HOH A 49 1149 49 HOH HOH . F 6 HOH A 50 1150 50 HOH HOH . F 6 HOH A 51 1151 51 HOH HOH . F 6 HOH A 52 1152 52 HOH HOH . F 6 HOH A 53 1153 53 HOH HOH . F 6 HOH A 54 1154 54 HOH HOH . F 6 HOH A 55 1155 55 HOH HOH . F 6 HOH A 56 1156 56 HOH HOH . F 6 HOH A 57 1157 57 HOH HOH . F 6 HOH A 58 1158 58 HOH HOH . F 6 HOH A 59 1159 59 HOH HOH . F 6 HOH A 60 1160 60 HOH HOH . F 6 HOH A 61 1161 61 HOH HOH . F 6 HOH A 62 1162 62 HOH HOH . F 6 HOH A 63 1163 63 HOH HOH . F 6 HOH A 64 1164 64 HOH HOH . F 6 HOH A 65 1165 65 HOH HOH . F 6 HOH A 66 1166 66 HOH HOH . F 6 HOH A 67 1167 67 HOH HOH . F 6 HOH A 68 1168 68 HOH HOH . F 6 HOH A 69 1169 69 HOH HOH . F 6 HOH A 70 1170 70 HOH HOH . F 6 HOH A 71 1171 71 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 3 -16.936 -13.481 -5.037 1 33.3 ? N1 FMN 1002 A 1 HETATM 2 C C2 FMN . . . C 3 -16.313 -12.553 -4.23 1 35.26 ? C2 FMN 1002 A 1 HETATM 3 O O2 FMN . . . C 3 -16.234 -12.747 -3.019 1 31.12 ? O2 FMN 1002 A 1 HETATM 4 N N3 FMN . . . C 3 -15.782 -11.409 -4.778 1 31.48 ? N3 FMN 1002 A 1 HETATM 5 C C4 FMN . . . C 3 -15.868 -11.186 -6.132 1 35.47 ? C4 FMN 1002 A 1 HETATM 6 O O4 FMN . . . C 3 -15.394 -10.163 -6.62 1 36.09 ? O4 FMN 1002 A 1 HETATM 7 C C4A FMN . . . C 3 -16.494 -12.121 -6.945 1 37.06 ? C4A FMN 1002 A 1 HETATM 8 N N5 FMN . . . C 3 -16.576 -11.899 -8.302 1 37.66 ? N5 FMN 1002 A 1 HETATM 9 C C5A FMN . . . C 3 -17.203 -12.822 -9.11 1 39.83 ? C5A FMN 1002 A 1 HETATM 10 C C6 FMN . . . C 3 -17.281 -12.578 -10.475 1 34.91 ? C6 FMN 1002 A 1 HETATM 11 C C7 FMN . . . C 3 -17.902 -13.49 -11.32 1 34.9 ? C7 FMN 1002 A 1 HETATM 12 C C7M FMN . . . C 3 -17.961 -13.182 -12.794 1 31.55 ? C7M FMN 1002 A 1 HETATM 13 C C8 FMN . . . C 3 -18.445 -14.654 -10.779 1 33.61 ? C8 FMN 1002 A 1 HETATM 14 C C8M FMN . . . C 3 -19.128 -15.67 -11.642 1 47.29 ? C8M FMN 1002 A 1 HETATM 15 C C9 FMN . . . C 3 -18.366 -14.894 -9.413 1 33.73 ? C9 FMN 1002 A 1 HETATM 16 C C9A FMN . . . C 3 -17.745 -13.983 -8.562 1 38.01 ? C9A FMN 1002 A 1 HETATM 17 N N10 FMN . . . C 3 -17.664 -14.21 -7.196 1 32.41 ? N10 FMN 1002 A 1 HETATM 18 C C10 FMN . . . C 3 -17.033 -13.277 -6.396 1 32.08 ? C10 FMN 1002 A 1 HETATM 19 C C1' FMN . . . C 3 -18.222 -15.463 -6.566 1 40.73 ? C1' FMN 1002 A 1 HETATM 20 C C2' FMN . . . C 3 -19.691 -15.318 -6.18 1 37.35 ? C2' FMN 1002 A 1 HETATM 21 O O2' FMN . . . C 3 -19.815 -14.312 -5.202 1 37.36 ? O2' FMN 1002 A 1 HETATM 22 C C3' FMN . . . C 3 -20.253 -16.62 -5.61 1 37.04 ? C3' FMN 1002 A 1 HETATM 23 O O3' FMN . . . C 3 -19.571 -16.937 -4.417 1 36.75 ? O3' FMN 1002 A 1 HETATM 24 C C4' FMN . . . C 3 -20.126 -17.788 -6.587 1 33.72 ? C4' FMN 1002 A 1 HETATM 25 O O4' FMN . . . C 3 -20.463 -17.362 -7.888 1 39.07 ? O4' FMN 1002 A 1 HETATM 26 C C5' FMN . . . C 3 -21.016 -18.963 -6.201 1 33.9 ? C5' FMN 1002 A 1 HETATM 27 O O5' FMN . . . C 3 -22.372 -18.586 -6.282 1 39.86 ? O5' FMN 1002 A 1 HETATM 28 P P FMN . . . C 3 -23.363 -19.285 -7.34 1 38.88 ? P FMN 1002 A 1 HETATM 29 O O1P FMN . . . C 3 -23.075 -18.706 -8.702 1 36.69 ? O1P FMN 1002 A 1 HETATM 30 O O2P FMN . . . C 3 -24.797 -19.017 -6.955 1 39.21 ? O2P FMN 1002 A 1 HETATM 31 O O3P FMN . . . C 3 -23.112 -20.771 -7.382 1 40.44 ? O3P FMN 1002 A 1 HETATM 32 H HN3 FMN . . . C 3 -15.313 -10.71 -4.166 1 37.78 ? HN3 FMN 1002 A 1 HETATM 33 H H6 FMN . . . C 3 -16.853 -11.664 -10.886 1 41.89 ? H6 FMN 1002 A 1 HETATM 34 H HM71 FMN . . . C 3 -18.475 -13.991 -13.314 1 37.86 ? HM71 FMN 1002 A 1 HETATM 35 H HM72 FMN . . . C 3 -16.948 -13.085 -13.186 1 37.86 ? HM72 FMN 1002 A 1 HETATM 36 H HM73 FMN . . . C 3 -18.502 -12.249 -12.949 1 37.86 ? HM73 FMN 1002 A 1 HETATM 37 H HM81 FMN . . . C 3 -19.48 -16.495 -11.023 1 56.75 ? HM81 FMN 1002 A 1 HETATM 38 H HM82 FMN . . . C 3 -18.425 -16.047 -12.384 1 56.75 ? HM82 FMN 1002 A 1 HETATM 39 H HM83 FMN . . . C 3 -19.976 -15.207 -12.147 1 56.75 ? HM83 FMN 1002 A 1 HETATM 40 H H9 FMN . . . C 3 -18.796 -15.807 -9.001 1 40.48 ? H9 FMN 1002 A 1 HETATM 41 H "H1'1" FMN . . . C 3 -17.641 -15.706 -5.677 1 48.88 ? "H1'1" FMN 1002 A 1 HETATM 42 H "H1'2" FMN . . . C 3 -18.116 -16.292 -7.266 1 48.88 ? "H1'2" FMN 1002 A 1 HETATM 43 H H2' FMN . . . C 3 -20.264 -15.047 -7.067 1 44.82 ? H2' FMN 1002 A 1 HETATM 44 H HO2' FMN . . . C 3 -20.228 -14.688 -4.397 1 44.83 ? HO2' FMN 1002 A 1 HETATM 45 H H3' FMN . . . C 3 -21.31 -16.47 -5.393 1 44.45 ? H3' FMN 1002 A 1 HETATM 46 H HO3' FMN . . . C 3 -19.176 -17.83 -4.494 1 44.1 ? HO3' FMN 1002 A 1 HETATM 47 H H4' FMN . . . C 3 -19.091 -18.128 -6.577 1 40.47 ? H4' FMN 1002 A 1 HETATM 48 H HO4' FMN . . . C 3 -21.189 -17.921 -8.237 1 46.88 ? HO4' FMN 1002 A 1 HETATM 49 H "H5'1" FMN . . . C 3 -20.784 -19.282 -5.185 1 40.68 ? "H5'1" FMN 1002 A 1 HETATM 50 H "H5'2" FMN . . . C 3 -20.827 -19.802 -6.871 1 40.68 ? "H5'2" FMN 1002 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #