data_4RX4 # _model_server_result.job_id iG8AosYzXzhvZvjHnHJcmg _model_server_result.datetime_utc '2024-10-17 22:11:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":501}' # _entry.id 4RX4 # _exptl.entry_id 4RX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4RX4 _cell.length_a 220.353 _cell.length_b 220.353 _cell.length_c 118.493 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1 D,E,F,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 G CYS 54 1_555 A SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf2 A SG CYS 76 G CYS 119 1_555 A SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf3 A SG CYS 102 G CYS 218 1_555 A SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf4 A SG CYS 112 G CYS 228 1_555 A SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 A SG CYS 244 G CYS 378 1_555 A SG CYS 307 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 251 G CYS 385 1_555 A SG CYS 280 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf8 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf9 B SG CYS 151 H CYS 140 1_555 B SG CYS 207 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 C SG CYS 23 L CYS 23 1_555 C SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf11 C SG CYS 133 L CYS 134 1_555 C SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf12 D SG CYS 11 E CYS 54 1_555 D SG CYS 31 E CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf13 D SG CYS 76 E CYS 119 1_555 D SG CYS 89 E CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf14 D SG CYS 102 E CYS 218 1_555 D SG CYS 131 E CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 D SG CYS 112 E CYS 228 1_555 D SG CYS 123 E CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf16 D SG CYS 244 E CYS 378 1_555 D SG CYS 307 E CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 D SG CYS 251 E CYS 385 1_555 D SG CYS 280 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf18 E SG CYS 22 A CYS 22 1_555 E SG CYS 95 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf19 E SG CYS 151 A CYS 140 1_555 E SG CYS 207 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf20 E SG CYS 227 A CYS 216 1_555 F SG CYS 213 D CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf21 F SG CYS 23 D CYS 23 1_555 F SG CYS 87 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf22 F SG CYS 133 D CYS 134 1_555 F SG CYS 193 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? covale ? covale1 A ND2 ASN 125 G ASN 241 1_555 L C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 A ND2 ASN 146 G ASN 262 1_555 G C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale3 A ND2 ASN 160 G ASN 276 1_555 K C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? covale ? covale4 A ND2 ASN 229 G ASN 363 1_555 J C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? covale ? covale5 A ND2 ASN 252 G ASN 386 1_555 I C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 D ND2 ASN 160 E ASN 276 1_555 W C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale7 D ND2 ASN 229 E ASN 363 1_555 Y C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale8 D ND2 ASN 252 E ASN 386 1_555 X C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 4RX4 _atom_sites.fract_transf_matrix[1][1] 0.004538 _atom_sites.fract_transf_matrix[1][2] 0.00262 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00524 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG G 1 501 762 NAG NAG . H 4 NAG G 1 502 795 NAG NAG . I 4 NAG G 1 503 886 NAG NAG . J 4 NAG G 1 504 863 NAG NAG . K 4 NAG G 1 505 776 NAG NAG . L 4 NAG G 1 506 741 NAG NAG . M 5 SO4 G 1 507 1 SO4 SO4 . N 6 EDO G 1 508 2 EDO EDO . O 6 EDO G 1 509 3 EDO EDO . P 6 EDO G 1 510 4 EDO EDO . Q 5 SO4 G 1 511 5 SO4 SO4 . R 5 SO4 G 1 512 405 SO4 SO4 . S 6 EDO G 1 513 406 EDO EDO . T 5 SO4 L 1 401 401 SO4 SO4 . U 5 SO4 L 1 402 402 SO4 SO4 . V 5 SO4 L 1 403 404 SO4 SO4 . W 4 NAG E 1 501 776 NAG NAG . X 4 NAG E 1 502 886 NAG NAG . Y 4 NAG E 1 503 863 NAG NAG . Z 4 NAG E 1 504 762 NAG NAG . AA 4 NAG E 1 505 741 NAG NAG . BA 5 SO4 E 1 506 1 SO4 SO4 . CA 6 EDO E 1 507 2 EDO EDO . DA 5 SO4 A 1 301 1 SO4 SO4 . EA 5 SO4 D 1 301 3 SO4 SO4 . FA 5 SO4 D 1 302 401 SO4 SO4 . GA 5 SO4 D 1 303 402 SO4 SO4 . HA 5 SO4 D 1 304 403 SO4 SO4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . W 4 32.85 -18.969 92.131 1 150.21 ? C1 NAG 501 E 1 HETATM 2 C C2 NAG . . . W 4 33.608 -17.769 91.528 1 158.6 ? C2 NAG 501 E 1 HETATM 3 C C3 NAG . . . W 4 33.942 -18.032 90.05 1 152.65 ? C3 NAG 501 E 1 HETATM 4 C C4 NAG . . . W 4 34.55 -19.415 89.846 1 153.22 ? C4 NAG 501 E 1 HETATM 5 C C5 NAG . . . W 4 33.702 -20.477 90.536 1 153.83 ? C5 NAG 501 E 1 HETATM 6 C C6 NAG . . . W 4 34.276 -21.872 90.43 1 156.94 ? C6 NAG 501 E 1 HETATM 7 C C7 NAG . . . W 4 31.628 -16.32 92.091 1 180.27 ? C7 NAG 501 E 1 HETATM 8 C C8 NAG . . . W 4 31.144 -14.902 92.113 1 161.72 ? C8 NAG 501 E 1 HETATM 9 N N2 NAG . . . W 4 32.894 -16.498 91.667 1 158.39 ? N2 NAG 501 E 1 HETATM 10 O O3 NAG . . . W 4 34.854 -17.042 89.583 1 153.52 ? O3 NAG 501 E 1 HETATM 11 O O4 NAG . . . W 4 34.622 -19.708 88.454 1 150.48 ? O4 NAG 501 E 1 HETATM 12 O O5 NAG . . . W 4 33.602 -20.161 91.931 1 152.1 ? O5 NAG 501 E 1 HETATM 13 O O6 NAG . . . W 4 35.486 -21.897 89.683 1 159.13 ? O6 NAG 501 E 1 HETATM 14 O O7 NAG . . . W 4 30.91 -17.245 92.454 1 164.94 ? O7 NAG 501 E 1 HETATM 15 H H1 NAG . . . W 4 31.983 -19.057 91.69 1 180.25 ? H1 NAG 501 E 1 HETATM 16 H H2 NAG . . . W 4 34.455 -17.688 92.006 1 190.32 ? H2 NAG 501 E 1 HETATM 17 H H3 NAG . . . W 4 33.12 -17.971 89.528 1 183.18 ? H3 NAG 501 E 1 HETATM 18 H H4 NAG . . . W 4 35.45 -19.428 90.223 1 183.86 ? H4 NAG 501 E 1 HETATM 19 H H5 NAG . . . W 4 32.808 -20.472 90.145 1 184.59 ? H5 NAG 501 E 1 HETATM 20 H H61 NAG . . . W 4 33.623 -22.452 89.994 1 188.32 ? H61 NAG 501 E 1 HETATM 21 H H62 NAG . . . W 4 34.452 -22.212 91.328 1 188.32 ? H62 NAG 501 E 1 HETATM 22 H H81 NAG . . . W 4 31.684 -14.383 92.739 1 194.06 ? H81 NAG 501 E 1 HETATM 23 H H82 NAG . . . W 4 30.21 -14.881 92.394 1 194.06 ? H82 NAG 501 E 1 HETATM 24 H H83 NAG . . . W 4 31.223 -14.517 91.219 1 194.06 ? H83 NAG 501 E 1 HETATM 25 H HN2 NAG . . . W 4 33.346 -15.748 91.413 1 190.07 ? HN2 NAG 501 E 1 HETATM 26 H HO3 NAG . . . W 4 35.156 -16.57 90.272 1 184.22 ? HO3 NAG 501 E 1 HETATM 27 H HO4 NAG . . . W 4 34.114 -19.136 88.003 1 180.58 ? HO4 NAG 501 E 1 HETATM 28 H HO6 NAG . . . W 4 36.173 -21.767 90.23 1 190.95 ? HO6 NAG 501 E 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #