data_4RX4
#
_model_server_result.job_id            M2g-eu34WCGU8yL2EI5xVA 
_model_server_result.datetime_utc      '2024-11-23 13:28:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4rx4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"X","auth_seq_id":502}' 
#
_entry.id    4RX4 
#
_exptl.entry_id    4RX4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4RX4 
_cell.length_a            220.353 
_cell.length_b            220.353 
_cell.length_c            118.493 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4RX4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        146 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'H 3' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? trimeric 3 author_defined_assembly 1 
? trimeric 3 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 1 1 
D,E,F,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 W N N 
? 4 X N N 
? 4 Y N N 
? 4 Z N N 
? 4 AA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 11 G CYS 54 1_555 A SG CYS 31 G CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf2 A SG CYS 76 G CYS 119 1_555 A SG CYS 89 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf3 A SG CYS 102 G CYS 218 1_555 A SG CYS 131 G CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
disulf ? disulf4 A SG CYS 112 G CYS 228 1_555 A SG CYS 123 G CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 180 G CYS 296 1_555 A SG CYS 199 G CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf6 A SG CYS 244 G CYS 378 1_555 A SG CYS 307 G CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 A SG CYS 251 G CYS 385 1_555 A SG CYS 280 G CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf8 B SG CYS 22 H CYS 22 1_555 B SG CYS 95 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf9 B SG CYS 151 H CYS 140 1_555 B SG CYS 207 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf10 C SG CYS 23 L CYS 23 1_555 C SG CYS 87 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf11 C SG CYS 133 L CYS 134 1_555 C SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf12 D SG CYS 11 E CYS 54 1_555 D SG CYS 31 E CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf13 D SG CYS 76 E CYS 119 1_555 D SG CYS 89 E CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf14 D SG CYS 102 E CYS 218 1_555 D SG CYS 131 E CYS 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf15 D SG CYS 112 E CYS 228 1_555 D SG CYS 123 E CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 D SG CYS 244 E CYS 378 1_555 D SG CYS 307 E CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf17 D SG CYS 251 E CYS 385 1_555 D SG CYS 280 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf18 E SG CYS 22 A CYS 22 1_555 E SG CYS 95 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
disulf ? disulf19 E SG CYS 151 A CYS 140 1_555 E SG CYS 207 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf20 E SG CYS 227 A CYS 216 1_555 F SG CYS 213 D CYS 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
disulf ? disulf21 F SG CYS 23 D CYS 23 1_555 F SG CYS 87 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf22 F SG CYS 133 D CYS 134 1_555 F SG CYS 193 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
covale ? covale1 A ND2 ASN 125 G ASN 241 1_555 L C1 NAG . G NAG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale2 A ND2 ASN 146 G ASN 262 1_555 G C1 NAG . G NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? 
covale ? covale3 A ND2 ASN 160 G ASN 276 1_555 K C1 NAG . G NAG 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
covale ? covale4 A ND2 ASN 229 G ASN 363 1_555 J C1 NAG . G NAG 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 ? 
covale ? covale5 A ND2 ASN 252 G ASN 386 1_555 I C1 NAG . G NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? 
covale ? covale6 D ND2 ASN 160 E ASN 276 1_555 W C1 NAG . E NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? 
covale ? covale7 D ND2 ASN 229 E ASN 363 1_555 Y C1 NAG . E NAG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? 
covale ? covale8 D ND2 ASN 252 E ASN 386 1_555 X C1 NAG . E NAG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 244 n n 
C1 O1 NAG sing 245 n n 
C1 O5 NAG sing 246 n n 
C1 H1 NAG sing 247 n n 
C2 C3 NAG sing 248 n n 
C2 N2 NAG sing 249 n n 
C2 H2 NAG sing 250 n n 
C3 C4 NAG sing 251 n n 
C3 O3 NAG sing 252 n n 
C3 H3 NAG sing 253 n n 
C4 C5 NAG sing 254 n n 
C4 O4 NAG sing 255 n n 
C4 H4 NAG sing 256 n n 
C5 C6 NAG sing 257 n n 
C5 O5 NAG sing 258 n n 
C5 H5 NAG sing 259 n n 
C6 O6 NAG sing 260 n n 
C6 H61 NAG sing 261 n n 
C6 H62 NAG sing 262 n n 
C7 C8 NAG sing 263 n n 
C7 N2 NAG sing 264 n n 
C7 O7 NAG doub 265 n n 
C8 H81 NAG sing 266 n n 
C8 H82 NAG sing 267 n n 
C8 H83 NAG sing 268 n n 
N2 HN2 NAG sing 269 n n 
O1 HO1 NAG sing 270 n n 
O3 HO3 NAG sing 271 n n 
O4 HO4 NAG sing 272 n n 
O6 HO6 NAG sing 273 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4RX4 
_atom_sites.fract_transf_matrix[1][1]    0.004538 
_atom_sites.fract_transf_matrix[1][2]    0.00262 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00524 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 NAG G 1 501 762 NAG NAG . 
H 4 NAG G 1 502 795 NAG NAG . 
I 4 NAG G 1 503 886 NAG NAG . 
J 4 NAG G 1 504 863 NAG NAG . 
K 4 NAG G 1 505 776 NAG NAG . 
L 4 NAG G 1 506 741 NAG NAG . 
M 5 SO4 G 1 507 1 SO4 SO4 . 
N 6 EDO G 1 508 2 EDO EDO . 
O 6 EDO G 1 509 3 EDO EDO . 
P 6 EDO G 1 510 4 EDO EDO . 
Q 5 SO4 G 1 511 5 SO4 SO4 . 
R 5 SO4 G 1 512 405 SO4 SO4 . 
S 6 EDO G 1 513 406 EDO EDO . 
T 5 SO4 L 1 401 401 SO4 SO4 . 
U 5 SO4 L 1 402 402 SO4 SO4 . 
V 5 SO4 L 1 403 404 SO4 SO4 . 
W 4 NAG E 1 501 776 NAG NAG . 
X 4 NAG E 1 502 886 NAG NAG . 
Y 4 NAG E 1 503 863 NAG NAG . 
Z 4 NAG E 1 504 762 NAG NAG . 
AA 4 NAG E 1 505 741 NAG NAG . 
BA 5 SO4 E 1 506 1 SO4 SO4 . 
CA 6 EDO E 1 507 2 EDO EDO . 
DA 5 SO4 A 1 301 1 SO4 SO4 . 
EA 5 SO4 D 1 301 3 SO4 SO4 . 
FA 5 SO4 D 1 302 401 SO4 SO4 . 
GA 5 SO4 D 1 303 402 SO4 SO4 . 
HA 5 SO4 D 1 304 403 SO4 SO4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . X 4 39.317 -17.717 126.163 1 120.36 ? C1 NAG 502 E 1 
HETATM 2 C C2 NAG . . . X 4 39.356 -16.911 127.462 1 138.26 ? C2 NAG 502 E 1 
HETATM 3 C C3 NAG . . . X 4 40.626 -16.065 127.528 1 144.16 ? C3 NAG 502 E 1 
HETATM 4 C C4 NAG . . . X 4 41.855 -16.947 127.334 1 142.64 ? C4 NAG 502 E 1 
HETATM 5 C C5 NAG . . . X 4 41.733 -17.74 126.04 1 131.43 ? C5 NAG 502 E 1 
HETATM 6 C C6 NAG . . . X 4 42.873 -18.711 125.856 1 125.51 ? C6 NAG 502 E 1 
HETATM 7 C C7 NAG . . . X 4 37.111 -16.416 128.354 1 164.83 ? C7 NAG 502 E 1 
HETATM 8 C C8 NAG . . . X 4 35.973 -15.433 128.373 1 167.39 ? C8 NAG 502 E 1 
HETATM 9 N N2 NAG . . . X 4 38.168 -16.078 127.599 1 155.55 ? N2 NAG 502 E 1 
HETATM 10 O O3 NAG . . . X 4 40.687 -15.416 128.795 1 144.3 ? O3 NAG 502 E 1 
HETATM 11 O O4 NAG . . . X 4 43.043 -16.166 127.267 1 144.6 ? O4 NAG 502 E 1 
HETATM 12 O O5 NAG . . . X 4 40.519 -18.512 126.048 1 129.68 ? O5 NAG 502 E 1 
HETATM 13 O O6 NAG . . . X 4 42.508 -20.017 126.276 1 119.14 ? O6 NAG 502 E 1 
HETATM 14 O O7 NAG . . . X 4 37.072 -17.467 128.994 1 166.08 ? O7 NAG 502 E 1 
HETATM 15 H H1 NAG . . . X 4 39.262 -17.105 125.405 1 144.44 ? H1 NAG 502 E 1 
HETATM 16 H H2 NAG . . . X 4 39.378 -17.54 128.208 1 165.91 ? H2 NAG 502 E 1 
HETATM 17 H H3 NAG . . . X 4 40.6 -15.391 126.823 1 172.99 ? H3 NAG 502 E 1 
HETATM 18 H H4 NAG . . . X 4 41.923 -17.568 128.084 1 171.17 ? H4 NAG 502 E 1 
HETATM 19 H H5 NAG . . . X 4 41.714 -17.121 125.286 1 157.71 ? H5 NAG 502 E 1 
HETATM 20 H H61 NAG . . . X 4 43.639 -18.408 126.381 1 150.61 ? H61 NAG 502 E 1 
HETATM 21 H H62 NAG . . . X 4 43.123 -18.736 124.913 1 150.61 ? H62 NAG 502 E 1 
HETATM 22 H H81 NAG . . . X 4 36.278 -14.589 128.755 1 200.86 ? H81 NAG 502 E 1 
HETATM 23 H H82 NAG . . . X 4 35.243 -15.79 128.914 1 200.86 ? H82 NAG 502 E 1 
HETATM 24 H H83 NAG . . . X 4 35.658 -15.283 127.462 1 200.86 ? H83 NAG 502 E 1 
HETATM 25 H HN2 NAG . . . X 4 38.141 -15.287 127.146 1 186.66 ? HN2 NAG 502 E 1 
HETATM 26 H HO3 NAG . . . X 4 39.975 -15.64 129.277 1 173.16 ? HO3 NAG 502 E 1 
HETATM 27 H HO4 NAG . . . X 4 42.829 -15.304 127.241 1 173.52 ? HO4 NAG 502 E 1 
HETATM 28 H HO6 NAG . . . X 4 41.939 -20.368 125.691 1 142.97 ? HO6 NAG 502 E 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           325 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           28 
#