data_4RXA # _model_server_result.job_id PFHD0USW8mCxONtNZNOrkA _model_server_result.datetime_utc '2024-11-04 18:26:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rxa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 4RXA # _exptl.entry_id 4RXA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 528.604 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "N,N'-bis[3-(4,5-dihydro-1H-imidazol-2-yl)phenyl]biphenyl-4,4'-dicarboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4RXA _cell.length_a 110.757 _cell.length_b 110.757 _cell.length_c 77.96 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RXA _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_554 -y,-x,-z-1/2 0 -1 0 -1 0 0 0 0 -1 0 0 -38.98 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H28 N6 O2' _chem_comp.formula_weight 528.604 _chem_comp.id 3F2 _chem_comp.mon_nstd_flag . _chem_comp.name "N,N'-bis[3-(4,5-dihydro-1H-imidazol-2-yl)phenyl]biphenyl-4,4'-dicarboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms BPH-1358 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAV NAZ 3F2 sing 1 n n CAV CAT 3F2 sing 2 n n NAZ CBF 3F2 doub 3 n n CAT NAX 3F2 sing 4 n n CBF NAX 3F2 sing 5 n n CBF CBL 3F2 sing 6 n n CAH CBL 3F2 doub 7 n y CAH CAD 3F2 sing 8 n y CBL CAR 3F2 sing 9 n y CAD CAF 3F2 doub 10 n y CAR CBH 3F2 doub 11 n y CAF CBH 3F2 sing 12 n y CBH NBB 3F2 sing 13 n n NBB CBD 3F2 sing 14 n n OAB CBD 3F2 doub 15 n n CBD CBJ 3F2 sing 16 n n CBJ CAK 3F2 doub 17 n y CBJ CAL 3F2 sing 18 n y CAK CAO 3F2 sing 19 n y CAL CAP 3F2 doub 20 n y CAO CBN 3F2 doub 21 n y CAP CBN 3F2 sing 22 n y CBN CBM 3F2 sing 23 n n CBM CAM 3F2 doub 24 n y CBM CAN 3F2 sing 25 n y CAM CAI 3F2 sing 26 n y CAN CAJ 3F2 doub 27 n y CAI CBI 3F2 doub 28 n y CAJ CBI 3F2 sing 29 n y CBI CBC 3F2 sing 30 n n CBC OAA 3F2 doub 31 n n CBC NBA 3F2 sing 32 n n NBA CBG 3F2 sing 33 n n CBG CAQ 3F2 doub 34 n y CBG CAE 3F2 sing 35 n y CAQ CBK 3F2 sing 36 n y CAE CAC 3F2 doub 37 n y NAY CAU 3F2 sing 38 n n NAY CBE 3F2 sing 39 n n CAC CAG 3F2 sing 40 n y CBK CBE 3F2 sing 41 n n CBK CAG 3F2 doub 42 n y CAU CAS 3F2 sing 43 n n CBE NAW 3F2 doub 44 n n NAW CAS 3F2 sing 45 n n NAY H1 3F2 sing 46 n n CAU H3 3F2 sing 47 n n CAU H4 3F2 sing 48 n n CAS H5 3F2 sing 49 n n CAS H6 3F2 sing 50 n n CAQ H10 3F2 sing 51 n n CAG H11 3F2 sing 52 n n CAC H12 3F2 sing 53 n n CAE H13 3F2 sing 54 n n NBA H14 3F2 sing 55 n n CAJ H15 3F2 sing 56 n n CAN H16 3F2 sing 57 n n CAI H17 3F2 sing 58 n n CAM H18 3F2 sing 59 n n CAP H19 3F2 sing 60 n n CAL H20 3F2 sing 61 n n CAO H21 3F2 sing 62 n n CAK H22 3F2 sing 63 n n NBB H23 3F2 sing 64 n n CAR H24 3F2 sing 65 n n CAF H25 3F2 sing 66 n n CAD H26 3F2 sing 67 n n CAH H27 3F2 sing 68 n n NAX H28 3F2 sing 69 n n CAT H29 3F2 sing 70 n n CAV H30 3F2 sing 71 n n CAT H2 3F2 sing 72 n n CAV H7 3F2 sing 73 n n # _atom_sites.entry_id 4RXA _atom_sites.fract_transf_matrix[1][1] 0.009029 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009029 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012827 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3F2 A 1 1001 1001 3F2 3F2 . C 3 PO4 A 1 1002 1002 PO4 PO4 . D 4 HOH A 1 2001 2001 HOH HOH . D 4 HOH A 2 2002 2002 HOH HOH . D 4 HOH A 3 2003 2003 HOH HOH . D 4 HOH A 4 2004 2004 HOH HOH . D 4 HOH A 5 2005 2005 HOH HOH . D 4 HOH A 6 2006 2006 HOH HOH . D 4 HOH A 7 2007 2007 HOH HOH . D 4 HOH A 8 2008 2008 HOH HOH . D 4 HOH A 9 2009 2009 HOH HOH . D 4 HOH A 10 2010 2010 HOH HOH . D 4 HOH A 11 2011 2011 HOH HOH . D 4 HOH A 12 2012 2012 HOH HOH . D 4 HOH A 13 2013 2013 HOH HOH . D 4 HOH A 14 2014 2014 HOH HOH . D 4 HOH A 15 2015 2015 HOH HOH . D 4 HOH A 16 2016 2016 HOH HOH . D 4 HOH A 17 2017 2017 HOH HOH . D 4 HOH A 18 2018 2018 HOH HOH . D 4 HOH A 19 2019 2019 HOH HOH . D 4 HOH A 20 2020 2020 HOH HOH . D 4 HOH A 21 2021 2021 HOH HOH . D 4 HOH A 22 2022 2022 HOH HOH . D 4 HOH A 23 2023 2023 HOH HOH . D 4 HOH A 24 2024 2024 HOH HOH . D 4 HOH A 25 2025 2025 HOH HOH . D 4 HOH A 26 2026 2026 HOH HOH . D 4 HOH A 27 2027 2027 HOH HOH . D 4 HOH A 28 2028 2028 HOH HOH . D 4 HOH A 29 2029 2029 HOH HOH . D 4 HOH A 30 2030 2030 HOH HOH . D 4 HOH A 31 2031 2031 HOH HOH . D 4 HOH A 32 2032 2032 HOH HOH . D 4 HOH A 33 2033 2033 HOH HOH . D 4 HOH A 34 2034 2034 HOH HOH . D 4 HOH A 35 2035 2035 HOH HOH . D 4 HOH A 36 2036 2036 HOH HOH . D 4 HOH A 37 2037 2037 HOH HOH . D 4 HOH A 38 2038 2038 HOH HOH . D 4 HOH A 39 2039 2039 HOH HOH . D 4 HOH A 40 2040 2040 HOH HOH . D 4 HOH A 41 2041 2041 HOH HOH . D 4 HOH A 42 2042 2042 HOH HOH . D 4 HOH A 43 2043 2043 HOH HOH . D 4 HOH A 44 2044 2044 HOH HOH . D 4 HOH A 45 2045 2045 HOH HOH . D 4 HOH A 46 2046 2046 HOH HOH . D 4 HOH A 47 2047 2047 HOH HOH . D 4 HOH A 48 2048 2048 HOH HOH . D 4 HOH A 49 2049 2049 HOH HOH . D 4 HOH A 50 2050 2050 HOH HOH . D 4 HOH A 51 2051 2051 HOH HOH . D 4 HOH A 52 2052 2052 HOH HOH . D 4 HOH A 53 2053 2053 HOH HOH . D 4 HOH A 54 2054 2054 HOH HOH . D 4 HOH A 55 2055 2055 HOH HOH . D 4 HOH A 56 2056 2056 HOH HOH . D 4 HOH A 57 2057 2057 HOH HOH . D 4 HOH A 58 2058 2058 HOH HOH . D 4 HOH A 59 2059 2059 HOH HOH . D 4 HOH A 60 2060 2060 HOH HOH . D 4 HOH A 61 2061 2061 HOH HOH . D 4 HOH A 62 2062 2062 HOH HOH . D 4 HOH A 63 2063 2063 HOH HOH . D 4 HOH A 64 2064 2064 HOH HOH . D 4 HOH A 65 2065 2065 HOH HOH . D 4 HOH A 66 2066 2066 HOH HOH . D 4 HOH A 67 2067 2067 HOH HOH . D 4 HOH A 68 2068 2068 HOH HOH . D 4 HOH A 69 2069 2069 HOH HOH . D 4 HOH A 70 2070 2070 HOH HOH . D 4 HOH A 71 2071 2071 HOH HOH . D 4 HOH A 72 2072 2072 HOH HOH . D 4 HOH A 73 2073 2073 HOH HOH . D 4 HOH A 74 2074 2074 HOH HOH . D 4 HOH A 75 2075 2075 HOH HOH . D 4 HOH A 76 2076 2076 HOH HOH . D 4 HOH A 77 2077 2077 HOH HOH . D 4 HOH A 78 2078 2078 HOH HOH . D 4 HOH A 79 2079 2079 HOH HOH . D 4 HOH A 80 2080 2080 HOH HOH . D 4 HOH A 81 2081 2081 HOH HOH . D 4 HOH A 82 2082 2082 HOH HOH . D 4 HOH A 83 2083 2083 HOH HOH . D 4 HOH A 84 2084 2084 HOH HOH . D 4 HOH A 85 2085 2085 HOH HOH . D 4 HOH A 86 2086 2086 HOH HOH . D 4 HOH A 87 2087 2087 HOH HOH . D 4 HOH A 88 2088 2088 HOH HOH . D 4 HOH A 89 2089 2089 HOH HOH . D 4 HOH A 90 2090 2090 HOH HOH . D 4 HOH A 91 2091 2091 HOH HOH . D 4 HOH A 92 2092 2092 HOH HOH . D 4 HOH A 93 2093 2093 HOH HOH . D 4 HOH A 94 2094 2094 HOH HOH . D 4 HOH A 95 2095 2095 HOH HOH . D 4 HOH A 96 2096 2096 HOH HOH . D 4 HOH A 97 2097 2097 HOH HOH . D 4 HOH A 98 2098 2098 HOH HOH . D 4 HOH A 99 2099 2099 HOH HOH . D 4 HOH A 100 2100 2100 HOH HOH . D 4 HOH A 101 2101 2101 HOH HOH . D 4 HOH A 102 2102 2102 HOH HOH . D 4 HOH A 103 2103 2103 HOH HOH . D 4 HOH A 104 2104 2104 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N NAY 3F2 . . . B 2 -7.193 37.368 -11.322 0.5 48.15 ? NAY 3F2 1001 A 1 HETATM 2 C CAU 3F2 . . . B 2 -7.983 36.279 -11.905 0.5 48.77 ? CAU 3F2 1001 A 1 HETATM 3 C CAS 3F2 . . . B 2 -9.387 36.504 -11.448 0.5 44.23 ? CAS 3F2 1001 A 1 HETATM 4 N NAW 3F2 . . . B 2 -9.264 37.516 -10.411 0.5 50.53 ? NAW 3F2 1001 A 1 HETATM 5 C CBE 3F2 . . . B 2 -8.002 38.007 -10.405 0.5 57.28 ? CBE 3F2 1001 A 1 HETATM 6 C CBK 3F2 . . . B 2 -7.596 38.894 -9.461 0.5 62.35 ? CBK 3F2 1001 A 1 HETATM 7 C CAQ 3F2 . . . B 2 -6.355 39.457 -9.565 0.5 67.32 ? CAQ 3F2 1001 A 1 HETATM 8 C CAG 3F2 . . . B 2 -8.369 39.173 -8.336 0.5 62.79 ? CAG 3F2 1001 A 1 HETATM 9 C CAC 3F2 . . . B 2 -7.891 40.057 -7.346 0.5 62.8 ? CAC 3F2 1001 A 1 HETATM 10 C CAE 3F2 . . . B 2 -6.639 40.645 -7.488 0.5 67.19 ? CAE 3F2 1001 A 1 HETATM 11 C CBG 3F2 . . . B 2 -5.893 40.354 -8.615 0.5 69.14 ? CBG 3F2 1001 A 1 HETATM 12 N NBA 3F2 . . . B 2 -4.729 40.804 -8.822 0.5 71.26 ? NBA 3F2 1001 A 1 HETATM 13 C CBC 3F2 . . . B 2 -4.612 41.622 -9.855 0.5 73.16 ? CBC 3F2 1001 A 1 HETATM 14 O OAA 3F2 . . . B 2 -5.591 42.045 -10.48 0.5 72.74 ? OAA 3F2 1001 A 1 HETATM 15 C CBI 3F2 . . . B 2 -3.448 41.436 -10.463 0.5 72.4 ? CBI 3F2 1001 A 1 HETATM 16 C CAJ 3F2 . . . B 2 -2.248 41.519 -9.778 0.5 70.77 ? CAJ 3F2 1001 A 1 HETATM 17 C CAN 3F2 . . . B 2 -1.081 41.127 -10.426 0.5 69.92 ? CAN 3F2 1001 A 1 HETATM 18 C CAI 3F2 . . . B 2 -3.501 40.809 -11.684 0.5 71.17 ? CAI 3F2 1001 A 1 HETATM 19 C CAM 3F2 . . . B 2 -2.362 40.425 -12.319 0.5 72.1 ? CAM 3F2 1001 A 1 HETATM 20 C CBM 3F2 . . . B 2 -1.141 40.704 -11.755 0.5 71.8 ? CBM 3F2 1001 A 1 HETATM 21 C CBN 3F2 . . . B 2 -0.133 40.047 -12.256 0.5 70.28 ? CBN 3F2 1001 A 1 HETATM 22 C CAP 3F2 . . . B 2 -0.11 38.808 -11.724 0.5 71.09 ? CAP 3F2 1001 A 1 HETATM 23 C CAL 3F2 . . . B 2 0.743 37.895 -12.134 0.5 75.27 ? CAL 3F2 1001 A 1 HETATM 24 C CAO 3F2 . . . B 2 0.678 40.374 -13.361 0.5 69.9 ? CAO 3F2 1001 A 1 HETATM 25 C CAK 3F2 . . . B 2 1.623 39.397 -13.793 0.5 64.58 ? CAK 3F2 1001 A 1 HETATM 26 C CBJ 3F2 . . . B 2 1.634 38.155 -13.113 0.5 67.7 ? CBJ 3F2 1001 A 1 HETATM 27 C CBD 3F2 . . . B 2 2.37 37.073 -13.402 0.5 64.5 ? CBD 3F2 1001 A 1 HETATM 28 O OAB 3F2 . . . B 2 2.689 36.798 -14.546 0.5 63.41 ? OAB 3F2 1001 A 1 HETATM 29 N NBB 3F2 . . . B 2 2.242 36.167 -12.387 0.5 74.71 ? NBB 3F2 1001 A 1 HETATM 30 C CBH 3F2 . . . B 2 2.48 34.891 -12.597 0.5 81.83 ? CBH 3F2 1001 A 1 HETATM 31 C CAR 3F2 . . . B 2 3.227 34.125 -11.662 0.5 85.31 ? CAR 3F2 1001 A 1 HETATM 32 C CAF 3F2 . . . B 2 1.773 34.252 -13.606 1 81.62 ? CAF 3F2 1001 A 1 HETATM 33 C CAD 3F2 . . . B 2 1.925 32.894 -13.794 1 87.93 ? CAD 3F2 1001 A 1 HETATM 34 C CAH 3F2 . . . B 2 2.709 32.141 -12.928 1 72.07 ? CAH 3F2 1001 A 1 HETATM 35 C CBL 3F2 . . . B 2 3.367 32.734 -11.86 1 86.44 ? CBL 3F2 1001 A 1 HETATM 36 C CBF 3F2 . . . B 2 4.125 31.943 -11.031 1 90.19 ? CBF 3F2 1001 A 1 HETATM 37 N NAX 3F2 . . . B 2 3.947 30.589 -11.002 1 95.12 ? NAX 3F2 1001 A 1 HETATM 38 C CAT 3F2 . . . B 2 4.892 29.999 -10.099 1 83.16 ? CAT 3F2 1001 A 1 HETATM 39 C CAV 3F2 . . . B 2 5.924 31.033 -10.047 1 84.57 ? CAV 3F2 1001 A 1 HETATM 40 N NAZ 3F2 . . . B 2 5.13 32.284 -10.194 1 93.88 ? NAZ 3F2 1001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #