data_4RXE # _model_server_result.job_id Uhwog2zQ7G6MtDUV6yWVoA _model_server_result.datetime_utc '2024-10-28 02:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4rxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":4004}' # _entry.id 4RXE # _exptl.entry_id 4RXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.24 _cell.angle_gamma 90 _cell.entry_id 4RXE _cell.length_a 134.149 _cell.length_b 119.149 _cell.length_c 62.824 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4RXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 H N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 126 A ASP 103 1_555 D MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc2 A OD1 ASP 126 A ASP 103 1_555 F MG MG . A MG 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc3 A OD2 ASP 130 A ASP 107 1_555 D MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc4 A OD2 ASP 130 A ASP 107 1_555 F MG MG . A MG 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc5 A OD1 ASP 130 A ASP 107 1_555 F MG MG . A MG 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc6 A OD2 ASP 278 A ASP 255 1_555 E MG MG . A MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc7 C O5 3YQ . A 3YQ 3001 1_555 D MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc8 C O4 3YQ . A 3YQ 3001 1_555 D MG MG . A MG 3002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.908 ? metalc ? metalc9 C O3 3YQ . A 3YQ 3001 1_555 E MG MG . A MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc10 C O6 3YQ . A 3YQ 3001 1_555 E MG MG . A MG 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc11 C O4 3YQ . A 3YQ 3001 1_555 F MG MG . A MG 3004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc12 D MG MG . A MG 3002 1_555 K O HOH . A HOH 3166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc13 E MG MG . A MG 3003 1_555 K O HOH . A HOH 3130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc14 E MG MG . A MG 3003 1_555 K O HOH . A HOH 3165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc15 F MG MG . A MG 3004 1_555 K O HOH . A HOH 3164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc16 B OD2 ASP 126 B ASP 103 1_555 H MG MG . B MG 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc17 B OD1 ASP 126 B ASP 103 1_555 J MG MG . B MG 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc18 B OD2 ASP 130 B ASP 107 1_555 H MG MG . B MG 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc19 B OD2 ASP 130 B ASP 107 1_555 J MG MG . B MG 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? metalc ? metalc20 B OD2 ASP 278 B ASP 255 1_555 I MG MG . B MG 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc21 G O2 3YQ . B 3YQ 4001 1_555 H MG MG . B MG 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc22 G O4 3YQ . B 3YQ 4001 1_555 H MG MG . B MG 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc23 G O1 3YQ . B 3YQ 4001 1_555 I MG MG . B MG 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc24 G O5 3YQ . B 3YQ 4001 1_555 I MG MG . B MG 4003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc25 G O4 3YQ . B 3YQ 4001 1_555 J MG MG . B MG 4004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc26 H MG MG . B MG 4002 1_555 L O HOH . B HOH 4191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.879 ? metalc ? metalc27 J MG MG . B MG 4004 1_555 L O HOH . B HOH 4192 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4RXE _atom_sites.fract_transf_matrix[1][1] 0.007454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003048 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008393 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3YQ A 1 3001 3001 3YQ B14 . D 3 MG A 1 3002 3002 MG MG . E 3 MG A 1 3003 3003 MG MG . F 3 MG A 1 3004 3004 MG MG . G 2 3YQ B 1 4001 4001 3YQ B14 . H 3 MG B 1 4002 4002 MG MG . I 3 MG B 1 4003 4003 MG MG . J 3 MG B 1 4004 4004 MG MG . K 4 HOH A 1 3101 2 HOH HOH . K 4 HOH A 2 3102 3 HOH HOH . K 4 HOH A 3 3103 4 HOH HOH . K 4 HOH A 4 3104 5 HOH HOH . K 4 HOH A 5 3105 6 HOH HOH . K 4 HOH A 6 3106 12 HOH HOH . K 4 HOH A 7 3107 15 HOH HOH . K 4 HOH A 8 3108 16 HOH HOH . K 4 HOH A 9 3109 18 HOH HOH . K 4 HOH A 10 3110 20 HOH HOH . K 4 HOH A 11 3111 22 HOH HOH . K 4 HOH A 12 3112 24 HOH HOH . K 4 HOH A 13 3113 26 HOH HOH . K 4 HOH A 14 3114 30 HOH HOH . K 4 HOH A 15 3115 31 HOH HOH . K 4 HOH A 16 3116 32 HOH HOH . K 4 HOH A 17 3117 33 HOH HOH . K 4 HOH A 18 3118 34 HOH HOH . K 4 HOH A 19 3119 35 HOH HOH . K 4 HOH A 20 3120 42 HOH HOH . K 4 HOH A 21 3121 45 HOH HOH . K 4 HOH A 22 3122 48 HOH HOH . K 4 HOH A 23 3123 52 HOH HOH . K 4 HOH A 24 3124 54 HOH HOH . K 4 HOH A 25 3125 56 HOH HOH . K 4 HOH A 26 3126 58 HOH HOH . K 4 HOH A 27 3127 60 HOH HOH . K 4 HOH A 28 3128 61 HOH HOH . K 4 HOH A 29 3129 67 HOH HOH . K 4 HOH A 30 3130 69 HOH HOH . K 4 HOH A 31 3131 74 HOH HOH . K 4 HOH A 32 3132 76 HOH HOH . K 4 HOH A 33 3133 77 HOH HOH . K 4 HOH A 34 3134 78 HOH HOH . K 4 HOH A 35 3135 81 HOH HOH . K 4 HOH A 36 3136 84 HOH HOH . K 4 HOH A 37 3137 85 HOH HOH . K 4 HOH A 38 3138 86 HOH HOH . K 4 HOH A 39 3139 87 HOH HOH . K 4 HOH A 40 3140 88 HOH HOH . K 4 HOH A 41 3141 90 HOH HOH . K 4 HOH A 42 3142 92 HOH HOH . K 4 HOH A 43 3143 93 HOH HOH . K 4 HOH A 44 3144 95 HOH HOH . K 4 HOH A 45 3145 96 HOH HOH . K 4 HOH A 46 3146 98 HOH HOH . K 4 HOH A 47 3147 103 HOH HOH . K 4 HOH A 48 3148 105 HOH HOH . K 4 HOH A 49 3149 106 HOH HOH . K 4 HOH A 50 3150 111 HOH HOH . K 4 HOH A 51 3151 112 HOH HOH . K 4 HOH A 52 3152 114 HOH HOH . K 4 HOH A 53 3153 116 HOH HOH . K 4 HOH A 54 3154 119 HOH HOH . K 4 HOH A 55 3155 122 HOH HOH . K 4 HOH A 56 3156 125 HOH HOH . K 4 HOH A 57 3157 127 HOH HOH . K 4 HOH A 58 3158 132 HOH HOH . K 4 HOH A 59 3159 134 HOH HOH . K 4 HOH A 60 3160 140 HOH HOH . K 4 HOH A 61 3161 143 HOH HOH . K 4 HOH A 62 3162 145 HOH HOH . K 4 HOH A 63 3163 152 HOH HOH . K 4 HOH A 64 3164 154 HOH HOH . K 4 HOH A 65 3165 155 HOH HOH . K 4 HOH A 66 3166 156 HOH HOH . L 4 HOH B 1 4101 1 HOH HOH . L 4 HOH B 2 4102 7 HOH HOH . L 4 HOH B 3 4103 8 HOH HOH . L 4 HOH B 4 4104 9 HOH HOH . L 4 HOH B 5 4105 10 HOH HOH . L 4 HOH B 6 4106 11 HOH HOH . L 4 HOH B 7 4107 13 HOH HOH . L 4 HOH B 8 4108 14 HOH HOH . L 4 HOH B 9 4109 17 HOH HOH . L 4 HOH B 10 4110 19 HOH HOH . L 4 HOH B 11 4111 21 HOH HOH . L 4 HOH B 12 4112 23 HOH HOH . L 4 HOH B 13 4113 25 HOH HOH . L 4 HOH B 14 4114 27 HOH HOH . L 4 HOH B 15 4115 28 HOH HOH . L 4 HOH B 16 4116 29 HOH HOH . L 4 HOH B 17 4117 36 HOH HOH . L 4 HOH B 18 4118 37 HOH HOH . L 4 HOH B 19 4119 38 HOH HOH . L 4 HOH B 20 4120 39 HOH HOH . L 4 HOH B 21 4121 40 HOH HOH . L 4 HOH B 22 4122 41 HOH HOH . L 4 HOH B 23 4123 43 HOH HOH . L 4 HOH B 24 4124 44 HOH HOH . L 4 HOH B 25 4125 46 HOH HOH . L 4 HOH B 26 4126 47 HOH HOH . L 4 HOH B 27 4127 49 HOH HOH . L 4 HOH B 28 4128 50 HOH HOH . L 4 HOH B 29 4129 51 HOH HOH . L 4 HOH B 30 4130 53 HOH HOH . L 4 HOH B 31 4131 55 HOH HOH . L 4 HOH B 32 4132 57 HOH HOH . L 4 HOH B 33 4133 59 HOH HOH . L 4 HOH B 34 4134 62 HOH HOH . L 4 HOH B 35 4135 63 HOH HOH . L 4 HOH B 36 4136 64 HOH HOH . L 4 HOH B 37 4137 65 HOH HOH . L 4 HOH B 38 4138 66 HOH HOH . L 4 HOH B 39 4139 68 HOH HOH . L 4 HOH B 40 4140 70 HOH HOH . L 4 HOH B 41 4141 71 HOH HOH . L 4 HOH B 42 4142 72 HOH HOH . L 4 HOH B 43 4143 73 HOH HOH . L 4 HOH B 44 4144 75 HOH HOH . L 4 HOH B 45 4145 79 HOH HOH . L 4 HOH B 46 4146 80 HOH HOH . L 4 HOH B 47 4147 82 HOH HOH . L 4 HOH B 48 4148 83 HOH HOH . L 4 HOH B 49 4149 89 HOH HOH . L 4 HOH B 50 4150 91 HOH HOH . L 4 HOH B 51 4151 94 HOH HOH . L 4 HOH B 52 4152 97 HOH HOH . L 4 HOH B 53 4153 99 HOH HOH . L 4 HOH B 54 4154 100 HOH HOH . L 4 HOH B 55 4155 101 HOH HOH . L 4 HOH B 56 4156 102 HOH HOH . L 4 HOH B 57 4157 104 HOH HOH . L 4 HOH B 58 4158 107 HOH HOH . L 4 HOH B 59 4159 108 HOH HOH . L 4 HOH B 60 4160 109 HOH HOH . L 4 HOH B 61 4161 110 HOH HOH . L 4 HOH B 62 4162 113 HOH HOH . L 4 HOH B 63 4163 115 HOH HOH . L 4 HOH B 64 4164 117 HOH HOH . L 4 HOH B 65 4165 118 HOH HOH . L 4 HOH B 66 4166 120 HOH HOH . L 4 HOH B 67 4167 121 HOH HOH . L 4 HOH B 68 4168 123 HOH HOH . L 4 HOH B 69 4169 124 HOH HOH . L 4 HOH B 70 4170 126 HOH HOH . L 4 HOH B 71 4171 128 HOH HOH . L 4 HOH B 72 4172 129 HOH HOH . L 4 HOH B 73 4173 130 HOH HOH . L 4 HOH B 74 4174 131 HOH HOH . L 4 HOH B 75 4175 133 HOH HOH . L 4 HOH B 76 4176 135 HOH HOH . L 4 HOH B 77 4177 136 HOH HOH . L 4 HOH B 78 4178 137 HOH HOH . L 4 HOH B 79 4179 138 HOH HOH . L 4 HOH B 80 4180 139 HOH HOH . L 4 HOH B 81 4181 141 HOH HOH . L 4 HOH B 82 4182 142 HOH HOH . L 4 HOH B 83 4183 144 HOH HOH . L 4 HOH B 84 4184 146 HOH HOH . L 4 HOH B 85 4185 147 HOH HOH . L 4 HOH B 86 4186 148 HOH HOH . L 4 HOH B 87 4187 149 HOH HOH . L 4 HOH B 88 4188 150 HOH HOH . L 4 HOH B 89 4189 151 HOH HOH . L 4 HOH B 90 4190 153 HOH HOH . L 4 HOH B 91 4191 157 HOH HOH . L 4 HOH B 92 4192 158 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 23.275 _atom_site.Cartn_y -42.163 _atom_site.Cartn_z 13.064 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.02 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 4004 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #